RNA–Protein interactions for RNA: ENST00000396354.5

NDE1-201, Transcript of nudE neurodevelopment protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDE1, Length 3,221 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1-201ENST00000396354 NUP160Q12769 1436 aa13.27□□□□□ -0.29
NDE1-201ENST00000396354 FKBP8Q14318 412 aa13.26□□□□□ -0.29
NDE1-201ENST00000396354 PLB1Q6P1J6 1458 aa13.26□□□□□ -0.29
NDE1-201ENST00000396354 CHIC2Q9UKJ5 165 aa13.25□□□□□ -0.29
NDE1-201ENST00000396354 RAPGEF6Q8TEU7 1601 aa13.25□□□□□ -0.29
NDE1-201ENST00000396354 TCOF1Q13428 1488 aaKnown RBP13.25□□□□□ -0.29
NDE1-201ENST00000396354 DENND4BO75064 1496 aaPredicted RBP13.25□□□□□ -0.29
NDE1-201ENST00000396354 RRP7BPQ9NSQ0 103 aa13.23□□□□□ -0.29
NDE1-201ENST00000396354 SENP3-EIF4A1A0A087X0R7 540 aa13.23□□□□□ -0.29
NDE1-201ENST00000396354 ZBTB22O15209 634 aa13.23□□□□□ -0.29
NDE1-201ENST00000396354 ZNF644Q9H582 1327 aaPredicted RBP13.23□□□□□ -0.29
NDE1-201ENST00000396354 IRX6P78412 446 aaPredicted RBP13.22□□□□□ -0.29
NDE1-201ENST00000396354 JPH4Q96JJ6 628 aa13.21□□□□□ -0.29
NDE1-201ENST00000396354 PRG4Q92954 1404 aaPredicted RBP13.21□□□□□ -0.29
NDE1-201ENST00000396354 KIF14Q15058 1648 aa13.2□□□□□ -0.3
NDE1-201ENST00000396354 UACAQ9BZF9 1416 aa13.19□□□□□ -0.3
NDE1-201ENST00000396354 GCC2Q8IWJ2 1684 aa13.19□□□□□ -0.3
NDE1-201ENST00000396354 KDM5BQ9UGL1 1544 aa13.19□□□□□ -0.3
NDE1-201ENST00000396354 MIA2Q96PC5 1412 aa13.15□□□□□ -0.3
NDE1-201ENST00000396354 ABCC5O15440 1437 aa13.14□□□□□ -0.31
NDE1-201ENST00000396354 CLASP1Q7Z460 1538 aa13.14□□□□□ -0.31
NDE1-201ENST00000396354 OSCARQ8IYS5 282 aa13.14□□□□□ -0.31
NDE1-201ENST00000396354 POLR3GLQ9BT43 218 aa13.14□□□□□ -0.31
NDE1-201ENST00000396354 TSHZ2Q9NRE2 1034 aa13.13□□□□□ -0.31
NDE1-201ENST00000396354 DAPK1P53355 1430 aa13.13□□□□□ -0.31
NDE1-201ENST00000396354 PPP1R15AO75807 674 aaPredicted RBP13.13□□□□□ -0.31
NDE1-201ENST00000396354 NEFLP07196 543 aa13.13□□□□□ -0.31
NDE1-201ENST00000396354 ERCC6L2Q5T890 1561 aa13.13□□□□□ -0.31
NDE1-201ENST00000396354 DNMT1P26358 1616 aaKnown RBP13.12□□□□□ -0.31
NDE1-201ENST00000396354 ABCA8O94911 1581 aa13.12□□□□□ -0.31
NDE1-201ENST00000396354 TROQ12816 1431 aaPredicted RBP13.11□□□□□ -0.31
NDE1-201ENST00000396354 CARMIL2Q6F5E8 1435 aa13.1□□□□□ -0.31
NDE1-201ENST00000396354 ANP32CO43423 234 aa13.1□□□□□ -0.31
NDE1-201ENST00000396354 GPATCH8Q9UKJ3 1502 aaKnown RBP13.1□□□□□ -0.31
NDE1-201ENST00000396354 AKNAQ7Z591 1439 aa13.09□□□□□ -0.31
NDE1-201ENST00000396354 SHROOM2Q13796 1616 aa13.09□□□□□ -0.31
NDE1-201ENST00000396354 ADCY10Q96PN6 1610 aa13.09□□□□□ -0.31
NDE1-201ENST00000396354 CAMSAP2Q08AD1 1489 aa13.09□□□□□ -0.31
NDE1-201ENST00000396354 ATP10BO94823 1461 aa13.08□□□□□ -0.32
NDE1-201ENST00000396354 CDC42BPAQ5VT25 1732 aa13.06□□□□□ -0.32
NDE1-201ENST00000396354 TONSLQ96HA7 1378 aa13.06□□□□□ -0.32
NDE1-201ENST00000396354 MSH5O43196 834 aa13.06□□□□□ -0.32
NDE1-201ENST00000396354 HNRNPUQ00839 825 aaKnown RBP eCLIP13.06□□□□□ -0.32
NDE1-201ENST00000396354 ABCC10Q5T3U5 1492 aa13.04□□□□□ -0.32
NDE1-201ENST00000396354 MPHOSPH9Q99550 1183 aa13.04□□□□□ -0.32
NDE1-201ENST00000396354 ZNF777Q9ULD5 760 aaPredicted RBP13.04□□□□□ -0.32
NDE1-201ENST00000396354 ZNF326Q5BKZ1 582 aaKnown RBP13.03□□□□□ -0.32
NDE1-201ENST00000396354 CROCC2H7BZ55 1655 aa13.03□□□□□ -0.32
NDE1-201ENST00000396354 ITSN2Q9NZM3 1697 aa13.03□□□□□ -0.32
NDE1-201ENST00000396354 PTPRGP23470 1445 aa13.03□□□□□ -0.32
NDE1-201ENST00000396354 FOXD4L1Q9NU39 408 aa13.03□□□□□ -0.32
NDE1-201ENST00000396354 TIMELESSQ9UNS1 1208 aa13.03□□□□□ -0.32
NDE1-201ENST00000396354 ROCK1Q13464 1354 aa13.03□□□□□ -0.32
NDE1-201ENST00000396354 CFDP1Q9UEE9 299 aaPredicted RBP13.02□□□□□ -0.32
NDE1-201ENST00000396354 CDK11AQ9UQ88 783 aaPredicted RBP13.01□□□□□ -0.33
NDE1-201ENST00000396354 PZPP20742 1482 aa13□□□□□ -0.33
NDE1-201ENST00000396354 NCOA1Q15788 1441 aa13□□□□□ -0.33
NDE1-201ENST00000396354 FAM9BQ8IZU0 186 aa13□□□□□ -0.33
NDE1-201ENST00000396354 ADGBQ8N7X0 1667 aa12.99□□□□□ -0.33
NDE1-201ENST00000396354 ANKRD30BQ9BXX2 1392 aa12.98□□□□□ -0.33
NDE1-201ENST00000396354 L3MBTL2Q969R5 705 aa12.97□□□□□ -0.33
NDE1-201ENST00000396354 TEX14Q8IWB6 1497 aa12.96□□□□□ -0.33
NDE1-201ENST00000396354 ADGRL2O95490 1459 aa12.96□□□□□ -0.33
NDE1-201ENST00000396354 CDC42BPBQ9Y5S2 1711 aa12.96□□□□□ -0.34
NDE1-201ENST00000396354 PLEKHD1A6NEE1 506 aa12.95□□□□□ -0.34
NDE1-201ENST00000396354 TTC37Q6PGP7 1564 aa12.95□□□□□ -0.34
NDE1-201ENST00000396354 NBPF8Q3BBV2 869 aa12.94□□□□□ -0.34
NDE1-201ENST00000396354 SAMD9LQ8IVG5 1584 aa12.94□□□□□ -0.34
NDE1-201ENST00000396354 RPRD2Q5VT52 1461 aaKnown RBP12.94□□□□□ -0.34
NDE1-201ENST00000396354 HNRNPMP52272 730 aaKnown RBP eCLIP12.93□□□□□ -0.34
NDE1-201ENST00000396354 RNF216Q9NWF9 866 aaPredicted RBP12.93□□□□□ -0.34
NDE1-201ENST00000396354 MBD5Q9P267 1494 aa12.92□□□□□ -0.34
NDE1-201ENST00000396354 CCDC184Q52MB2 194 aa12.92□□□□□ -0.34
NDE1-201ENST00000396354 RBM19Q9Y4C8 960 aaKnown RBP12.92□□□□□ -0.34
NDE1-201ENST00000396354 C9orf84Q5VXU9 1444 aa12.91□□□□□ -0.34
NDE1-201ENST00000396354 HSPA5P11021 654 aaKnown RBP12.91□□□□□ -0.34
NDE1-201ENST00000396354 C11orf95C9JLR9 678 aaPredicted RBP12.91□□□□□ -0.34
NDE1-201ENST00000396354 PREX2Q70Z35 1606 aa12.9□□□□□ -0.34
NDE1-201ENST00000396354 WASHC2AQ641Q2 1341 aa12.9□□□□□ -0.34
NDE1-201ENST00000396354 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.89□□□□□ -0.35
NDE1-201ENST00000396354 ANKRD50Q9ULJ7 1429 aa12.89□□□□□ -0.35
NDE1-201ENST00000396354 ANP32EQ9BTT0 268 aa12.89□□□□□ -0.35
NDE1-201ENST00000396354 ABCC2Q92887 1545 aa12.89□□□□□ -0.35
NDE1-201ENST00000396354 CYB5RLQ6IPT4 315 aa12.88□□□□□ -0.35
NDE1-201ENST00000396354 RIMBP3CA6NJZ7 1639 aa12.88□□□□□ -0.35
NDE1-201ENST00000396354 RIMBP3BA6NNM3 1639 aa12.88□□□□□ -0.35
NDE1-201ENST00000396354 RIMBP3Q9UFD9 1639 aa12.88□□□□□ -0.35
NDE1-201ENST00000396354 SHANK2Q9UPX8 1470 aa12.87□□□□□ -0.35
NDE1-201ENST00000396354 ANKRD30AQ9BXX3 1397 aa12.87□□□□□ -0.35
NDE1-201ENST00000396354 SYCP2Q9BX26 1530 aa12.87□□□□□ -0.35
NDE1-201ENST00000396354 MAPK8IP2Q13387 824 aaPredicted RBP12.86□□□□□ -0.35
NDE1-201ENST00000396354 PKD2Q13563 968 aa12.86□□□□□ -0.35
NDE1-201ENST00000396354 SALL2Q9Y467 1007 aaPredicted RBP12.86□□□□□ -0.35
NDE1-201ENST00000396354 ARHGEF5Q12774 1597 aa12.85□□□□□ -0.35
NDE1-201ENST00000396354 ERICH6Q7L0X2 663 aa12.85□□□□□ -0.35
NDE1-201ENST00000396354 KIAA1107Q9UPP5 1409 aa12.85□□□□□ -0.35
NDE1-201ENST00000396354 B4GALNT3Q6L9W6 998 aa12.85□□□□□ -0.35
NDE1-201ENST00000396354 MRS2Q9HD23 443 aa12.85□□□□□ -0.35
NDE1-201ENST00000396354 KIF15Q9NS87 1388 aa12.85□□□□□ -0.35
NDE1-201ENST00000396354 ARHGEF12Q9NZN5 1544 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms