RNA–Protein interactions for RNA: ENST00000395906.7

CDRT1-204, CMT1A duplicated region transcript 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CDRT1, Length 2,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-204ENST00000395906 GRIN2AQ12879 1464 aa13.02□□□□□ -0.33
CDRT1-204ENST00000395906 HSP90AA1P07900 732 aaKnown RBP13.01□□□□□ -0.33
CDRT1-204ENST00000395906 FRAT1Q92837 279 aaPredicted RBP12.99□□□□□ -0.33
CDRT1-204ENST00000395906 SYNJ2O15056 1496 aa12.99□□□□□ -0.33
CDRT1-204ENST00000395906 CTTNBP2Q8WZ74 1663 aa12.98□□□□□ -0.33
CDRT1-204ENST00000395906 MAGI1Q96QZ7 1491 aaPredicted RBP12.98□□□□□ -0.33
CDRT1-204ENST00000395906 JPH4Q96JJ6 628 aa12.97□□□□□ -0.33
CDRT1-204ENST00000395906 HNRNPUQ00839 825 aaKnown RBP eCLIP12.97□□□□□ -0.33
CDRT1-204ENST00000395906 IQGAP2Q13576 1575 aa12.94□□□□□ -0.34
CDRT1-204ENST00000395906 CEP170Q5SW79 1584 aa12.94□□□□□ -0.34
CDRT1-204ENST00000395906 TAF7LQ5H9L4 462 aa12.92□□□□□ -0.34
CDRT1-204ENST00000395906 CALD1Q05682 793 aaKnown RBP12.92□□□□□ -0.34
CDRT1-204ENST00000395906 NAP1L5Q96NT1 182 aaPredicted RBP12.92□□□□□ -0.34
CDRT1-204ENST00000395906 KIAA0586Q9BVV6 1533 aa12.92□□□□□ -0.34
CDRT1-204ENST00000395906 RRAGDQ9NQL2 400 aaPredicted RBP12.91□□□□□ -0.34
CDRT1-204ENST00000395906 DCAF11Q8TEB1 546 aa12.9□□□□□ -0.34
CDRT1-204ENST00000395906 PRDM4Q9UKN5 801 aa12.9□□□□□ -0.34
CDRT1-204ENST00000395906 CENPJQ9HC77 1338 aaPredicted RBP12.9□□□□□ -0.34
CDRT1-204ENST00000395906 NFKBIBQ15653 356 aa12.89□□□□□ -0.35
CDRT1-204ENST00000395906 PCF11O94913 1555 aaKnown RBP12.89□□□□□ -0.35
CDRT1-204ENST00000395906 CHD1O14646 1710 aa12.88□□□□□ -0.35
CDRT1-204ENST00000395906 DISP1Q96F81 1524 aa12.87□□□□□ -0.35
CDRT1-204ENST00000395906 NPM2Q86SE8 214 aaKnown RBP12.87□□□□□ -0.35
CDRT1-204ENST00000395906 NUP160Q12769 1436 aa12.87□□□□□ -0.35
CDRT1-204ENST00000395906 PNNQ9H307 717 aaKnown RBP12.86□□□□□ -0.35
CDRT1-204ENST00000395906 SAMD9Q5K651 1589 aa12.86□□□□□ -0.35
CDRT1-204ENST00000395906 EFCAB5A4FU69 1503 aa12.86□□□□□ -0.35
CDRT1-204ENST00000395906 FMN1Q68DA7 1419 aa12.85□□□□□ -0.35
CDRT1-204ENST00000395906 DDRGK1Q96HY6 314 aa12.84□□□□□ -0.35
CDRT1-204ENST00000395906 PRG4Q92954 1404 aaPredicted RBP12.83□□□□□ -0.35
CDRT1-204ENST00000395906 CASKIN1Q8WXD9 1431 aa12.83□□□□□ -0.36
CDRT1-204ENST00000395906 PDCL3Q9H2J4 239 aa12.82□□□□□ -0.36
CDRT1-204ENST00000395906 PLB1Q6P1J6 1458 aa12.82□□□□□ -0.36
CDRT1-204ENST00000395906 UGGT2Q9NYU1 1516 aa12.82□□□□□ -0.36
CDRT1-204ENST00000395906 CLCN1P35523 988 aa12.8□□□□□ -0.36
CDRT1-204ENST00000395906 RGS3P49796 1198 aa12.8□□□□□ -0.36
CDRT1-204ENST00000395906 ERCC6L2Q5T890 1561 aa12.8□□□□□ -0.36
CDRT1-204ENST00000395906 KIAA0556O60303 1618 aa12.8□□□□□ -0.36
CDRT1-204ENST00000395906 CDK13Q14004 1512 aaKnown RBP12.8□□□□□ -0.36
CDRT1-204ENST00000395906 TIAM1Q13009 1591 aa12.79□□□□□ -0.36
CDRT1-204ENST00000395906 FAM50AQ14320 339 aaKnown RBP12.79□□□□□ -0.36
CDRT1-204ENST00000395906 MTUS2Q5JR59 1369 aa12.79□□□□□ -0.36
CDRT1-204ENST00000395906 LRRC9Q6ZRR7 1453 aa12.79□□□□□ -0.36
CDRT1-204ENST00000395906 PHLDB1Q86UU1 1377 aa12.79□□□□□ -0.36
CDRT1-204ENST00000395906 TCERG1O14776 1098 aaKnown RBP12.78□□□□□ -0.36
CDRT1-204ENST00000395906 FYCO1Q9BQS8 1478 aa12.78□□□□□ -0.36
CDRT1-204ENST00000395906 CARMIL2Q6F5E8 1435 aa12.78□□□□□ -0.36
CDRT1-204ENST00000395906 LRRIQ1Q96JM4 1722 aa12.78□□□□□ -0.36
CDRT1-204ENST00000395906 AEBP2Q6ZN18 517 aaPredicted RBP12.77□□□□□ -0.37
CDRT1-204ENST00000395906 NAP1L2Q9ULW6 460 aaPredicted RBP12.77□□□□□ -0.37
CDRT1-204ENST00000395906 PDE4AP27815 886 aa12.76□□□□□ -0.37
CDRT1-204ENST00000395906 KLHL34Q8N239 644 aa12.76□□□□□ -0.37
CDRT1-204ENST00000395906 BBXQ8WY36 941 aaPredicted RBP12.76□□□□□ -0.37
CDRT1-204ENST00000395906 SIN3AQ96ST3 1273 aa12.76□□□□□ -0.37
CDRT1-204ENST00000395906 L1TD1Q5T7N2 865 aaKnown RBP12.76□□□□□ -0.37
CDRT1-204ENST00000395906 OSCARQ8IYS5 282 aa12.76□□□□□ -0.37
CDRT1-204ENST00000395906 BACH2Q9BYV9 841 aa12.75□□□□□ -0.37
CDRT1-204ENST00000395906 PTPRGP23470 1445 aa12.75□□□□□ -0.37
CDRT1-204ENST00000395906 ZBED9Q6R2W3 1325 aa12.74□□□□□ -0.37
CDRT1-204ENST00000395906 MS4A1P11836 297 aa12.74□□□□□ -0.37
CDRT1-204ENST00000395906 TPM2P07951 284 aa12.73□□□□□ -0.37
CDRT1-204ENST00000395906 ZNF326Q5BKZ1 582 aaKnown RBP12.73□□□□□ -0.37
CDRT1-204ENST00000395906 EPRSP07814 1512 aaKnown RBP12.73□□□□□ -0.37
CDRT1-204ENST00000395906 MAGI3Q5TCQ9 1506 aa12.73□□□□□ -0.37
CDRT1-204ENST00000395906 MAPKBP1O60336 1514 aa12.73□□□□□ -0.37
CDRT1-204ENST00000395906 NUP153P49790 1475 aaKnown RBP12.72□□□□□ -0.37
CDRT1-204ENST00000395906 RNF123Q5XPI4 1314 aa12.71□□□□□ -0.37
CDRT1-204ENST00000395906 GTF2E1P29083 439 aaPredicted RBP12.71□□□□□ -0.37
CDRT1-204ENST00000395906 RSPH4AQ5TD94 716 aa12.7□□□□□ -0.38
CDRT1-204ENST00000395906 CCNB3Q8WWL7 1395 aa12.7□□□□□ -0.38
CDRT1-204ENST00000395906 IPO4Q8TEX9 1081 aaKnown RBP12.7□□□□□ -0.38
CDRT1-204ENST00000395906 FRAT2O75474 233 aaPredicted RBP12.69□□□□□ -0.38
CDRT1-204ENST00000395906 CANXP27824 592 aaKnown RBP12.69□□□□□ -0.38
CDRT1-204ENST00000395906 CFAP43Q8NDM7 1665 aa12.68□□□□□ -0.38
CDRT1-204ENST00000395906 SMG6Q86US8 1419 aaKnown RBP12.67□□□□□ -0.38
CDRT1-204ENST00000395906 RAPGEF6Q8TEU7 1601 aa12.67□□□□□ -0.38
CDRT1-204ENST00000395906 STAC3Q96MF2 364 aa12.67□□□□□ -0.38
CDRT1-204ENST00000395906 HIRIP3Q9BW71 556 aaPredicted RBP12.67□□□□□ -0.38
CDRT1-204ENST00000395906 CHMP4BQ9H444 224 aaKnown RBP12.67□□□□□ -0.38
CDRT1-204ENST00000395906 ZNF777Q9ULD5 760 aaPredicted RBP12.67□□□□□ -0.38
CDRT1-204ENST00000395906 ZNF644Q9H582 1327 aaPredicted RBP12.66□□□□□ -0.38
CDRT1-204ENST00000395906 HECW1Q76N89 1606 aa12.66□□□□□ -0.38
CDRT1-204ENST00000395906 NCLP19338 710 aaKnown RBP12.66□□□□□ -0.38
CDRT1-204ENST00000395906 NCBP3Q53F19 620 aaKnown RBP12.66□□□□□ -0.38
CDRT1-204ENST00000395906 PAXIP1Q6ZW49 1069 aaPredicted RBP12.66□□□□□ -0.38
CDRT1-204ENST00000395906 CHIC2Q9UKJ5 165 aa12.66□□□□□ -0.38
CDRT1-204ENST00000395906 NCOA2Q15596 1464 aa12.66□□□□□ -0.38
CDRT1-204ENST00000395906 MAP3K1Q13233 1512 aa12.66□□□□□ -0.38
CDRT1-204ENST00000395906 SMAP1Q8IYB5 467 aaPredicted RBP12.65□□□□□ -0.38
CDRT1-204ENST00000395906 CLASP1Q7Z460 1538 aa12.65□□□□□ -0.38
CDRT1-204ENST00000395906 PLEKHD1A6NEE1 506 aa12.65□□□□□ -0.39
CDRT1-204ENST00000395906 RRBP1Q9P2E9 1410 aaKnown RBP12.64□□□□□ -0.39
CDRT1-204ENST00000395906 CNGB1Q14028 1251 aaPredicted RBP12.64□□□□□ -0.39
CDRT1-204ENST00000395906 ARXQ96QS3 562 aa12.64□□□□□ -0.39
CDRT1-204ENST00000395906 AKNAQ7Z591 1439 aa12.64□□□□□ -0.39
CDRT1-204ENST00000395906 ATP10BO94823 1461 aa12.63□□□□□ -0.39
CDRT1-204ENST00000395906 CCDC18Q5T9S5 1454 aa12.63□□□□□ -0.39
CDRT1-204ENST00000395906 MAP7D2Q96T17 732 aa12.62□□□□□ -0.39
CDRT1-204ENST00000395906 SHROOM2Q13796 1616 aa12.61□□□□□ -0.39
CDRT1-204ENST00000395906 UACAQ9BZF9 1416 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms