RNA–Protein interactions for RNA: ENST00000395548.6

AP3S1-202, Transcript of adaptor related protein complex 3 subunit sigma 1, humanhuman

TSL 1 (best)

Gene AP3S1, Length 1,180 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP3S1-202ENST00000395548 DCAF8L2P0C7V8 631 aa12.12□□□□□ -0.47
AP3S1-202ENST00000395548 SHROOM4Q9ULL8 1493 aa12.12□□□□□ -0.47
AP3S1-202ENST00000395548 RYDENQ9NUL5 291 aaKnown RBP12.05□□□□□ -0.48
AP3S1-202ENST00000395548 EIF4G1Q04637 1599 aaKnown RBP12.05□□□□□ -0.48
AP3S1-202ENST00000395548 POTEMA6NI47 508 aa12.04□□□□□ -0.48
AP3S1-202ENST00000395548 LCE2DQ5TA82 110 aaPredicted RBP12.04□□□□□ -0.48
AP3S1-202ENST00000395548 POTEGQ6S5H5 508 aa12.03□□□□□ -0.48
AP3S1-202ENST00000395548 ST18O60284 1047 aa12.02□□□□□ -0.49
AP3S1-202ENST00000395548 NKX1-1Q15270 411 aaPredicted RBP11.99□□□□□ -0.49
AP3S1-202ENST00000395548 TMEM92Q6UXU6 159 aa11.99□□□□□ -0.49
AP3S1-202ENST00000395548 RTN4Q9NQC3 1192 aaKnown RBP11.99□□□□□ -0.49
AP3S1-202ENST00000395548 PPP1R37O75864 691 aa11.98□□□□□ -0.49
AP3S1-202ENST00000395548 DOK7Q18PE1 504 aa11.96□□□□□ -0.49
AP3S1-202ENST00000395548 ERCC6Q03468 1493 aa11.95□□□□□ -0.5
AP3S1-202ENST00000395548 RIMBP2O15034 1052 aa11.93□□□□□ -0.5
AP3S1-202ENST00000395548 ZNF710Q8N1W2 664 aa11.93□□□□□ -0.5
AP3S1-202ENST00000395548 HOXB3P14651 431 aaPredicted RBP11.92□□□□□ -0.5
AP3S1-202ENST00000395548 PCDH10Q9P2E7 1040 aa11.92□□□□□ -0.5
AP3S1-202ENST00000395548 TMC2Q8TDI7 906 aa11.91□□□□□ -0.5
AP3S1-202ENST00000395548 MYO15BQ96JP2 1530 aa11.88□□□□□ -0.51
AP3S1-202ENST00000395548 C2orf72A6NCS6 295 aa11.88□□□□□ -0.51
AP3S1-202ENST00000395548 KIF3CO14782 793 aa11.88□□□□□ -0.51
AP3S1-202ENST00000395548 GTPBP6O43824 516 aaPredicted RBP11.88□□□□□ -0.51
AP3S1-202ENST00000395548 MARVELD3Q96A59 401 aa11.86□□□□□ -0.51
AP3S1-202ENST00000395548 ZSWIM6Q9HCJ5 1215 aa11.86□□□□□ -0.51
AP3S1-202ENST00000395548 HOXB1P14653 301 aaPredicted RBP11.84□□□□□ -0.51
AP3S1-202ENST00000395548 EMP3P54852 163 aa11.84□□□□□ -0.51
AP3S1-202ENST00000395548 BBXQ8WY36 941 aaPredicted RBP11.84□□□□□ -0.51
AP3S1-202ENST00000395548 GPHNQ9NQX3 736 aaPredicted RBP11.8□□□□□ -0.52
AP3S1-202ENST00000395548 CDAN1Q8IWY9 1227 aa11.79□□□□□ -0.52
AP3S1-202ENST00000395548 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.77□□□□□ -0.53
AP3S1-202ENST00000395548 FAM205CA6NFA0 338 aa11.76□□□□□ -0.53
AP3S1-202ENST00000395548 FOXK1P85037 733 aa11.76□□□□□ -0.53
AP3S1-202ENST00000395548 GPR153Q6NV75 609 aa11.76□□□□□ -0.53
AP3S1-202ENST00000395548 SLC34A2O95436 690 aa11.75□□□□□ -0.53
AP3S1-202ENST00000395548 ERBB3P21860 1342 aa11.73□□□□□ -0.53
AP3S1-202ENST00000395548 PDE4AP27815 886 aa11.73□□□□□ -0.53
AP3S1-202ENST00000395548 ARSIQ5FYB1 569 aa11.73□□□□□ -0.53
AP3S1-202ENST00000395548 PLPP6Q8IY26 295 aa11.73□□□□□ -0.53
AP3S1-202ENST00000395548 HS3ST6Q96QI5 342 aa11.73□□□□□ -0.53
AP3S1-202ENST00000395548 DSG2Q14126 1118 aa11.71□□□□□ -0.53
AP3S1-202ENST00000395548 SPRYD3Q8NCJ5 442 aa11.71□□□□□ -0.53
AP3S1-202ENST00000395548 CRISPLD2Q9H0B8 497 aa11.71□□□□□ -0.53
AP3S1-202ENST00000395548 PCDHGA4Q9Y5G9 962 aa11.68□□□□□ -0.54
AP3S1-202ENST00000395548 NCKAP5LQ9HCH0 1330 aa11.66□□□□□ -0.54
AP3S1-202ENST00000395548 POTEB3A0JP26 581 aa11.66□□□□□ -0.54
AP3S1-202ENST00000395548 POTEBQ6S5H4 581 aa11.66□□□□□ -0.54
AP3S1-202ENST00000395548 TBC1D12O60347 775 aa11.65□□□□□ -0.54
AP3S1-202ENST00000395548 PPP1R15BQ5SWA1 713 aa11.65□□□□□ -0.54
AP3S1-202ENST00000395548 PTCD2Q8WV60 388 aaKnown RBP11.65□□□□□ -0.54
AP3S1-202ENST00000395548 KHSRPQ92945 711 aaKnown RBP eCLIP11.65□□□□□ -0.54
AP3S1-202ENST00000395548 VARS2Q5ST30 1063 aaKnown RBP11.64□□□□□ -0.55
AP3S1-202ENST00000395548 LARP6Q9BRS8 491 aaKnown RBP11.64□□□□□ -0.55
AP3S1-202ENST00000395548 ZNF316A6NFI3 1004 aaPredicted RBP11.63□□□□□ -0.55
AP3S1-202ENST00000395548 NUDT7P0C024 238 aa11.63□□□□□ -0.55
AP3S1-202ENST00000395548 DDX27Q96GQ7 796 aaKnown RBP11.62□□□□□ -0.55
AP3S1-202ENST00000395548 PAXIP1Q6ZW49 1069 aaPredicted RBP11.61□□□□□ -0.55
AP3S1-202ENST00000395548 CFAP44Q96MT7 982 aa11.61□□□□□ -0.55
AP3S1-202ENST00000395548 SCRIBQ14160 1630 aa11.6□□□□□ -0.55
AP3S1-202ENST00000395548 MFSD10Q14728 455 aa11.59□□□□□ -0.55
AP3S1-202ENST00000395548 CADPS2Q86UW7 1296 aa11.59□□□□□ -0.55
AP3S1-202ENST00000395548 ZNF687Q8N1G0 1237 aa11.58□□□□□ -0.56
AP3S1-202ENST00000395548 OXER1Q8TDS5 423 aa11.56□□□□□ -0.56
AP3S1-202ENST00000395548 LHX6Q9UPM6 363 aa11.56□□□□□ -0.56
AP3S1-202ENST00000395548 PSDA5PKW4 1024 aaPredicted RBP11.55□□□□□ -0.56
AP3S1-202ENST00000395548 UPF1Q92900 1129 aaKnown RBP eCLIP11.54□□□□□ -0.56
AP3S1-202ENST00000395548 KRTAP3-3Q9BYR6 98 aa11.54□□□□□ -0.56
AP3S1-202ENST00000395548 KRTAP3-2Q9BYR7 98 aa11.54□□□□□ -0.56
AP3S1-202ENST00000395548 KDM4FA0A1W2PPD8 638 aa11.52□□□□□ -0.57
AP3S1-202ENST00000395548 THOC2Q8NI27 1593 aaKnown RBP11.51□□□□□ -0.57
AP3S1-202ENST00000395548 SPNS2Q8IVW8 549 aa11.48□□□□□ -0.57
AP3S1-202ENST00000395548 PBX2P40425 430 aa11.47□□□□□ -0.57
AP3S1-202ENST00000395548 MAP3K9P80192 1104 aa11.47□□□□□ -0.57
AP3S1-202ENST00000395548 PPP4R3BQ5MIZ7 849 aa11.44□□□□□ -0.58
AP3S1-202ENST00000395548 EMILIN3Q9NT22 766 aa11.44□□□□□ -0.58
AP3S1-202ENST00000395548 NESP48681 1621 aa11.44□□□□□ -0.58
AP3S1-202ENST00000395548 BAZ1AQ9NRL2 1556 aaPredicted RBP11.44□□□□□ -0.58
AP3S1-202ENST00000395548 EVI5O60447 810 aa11.43□□□□□ -0.58
AP3S1-202ENST00000395548 CAMK2BQ13554 666 aa11.43□□□□□ -0.58
AP3S1-202ENST00000395548 ANO8Q9HCE9 1232 aaPredicted RBP11.42□□□□□ -0.58
AP3S1-202ENST00000395548 WDR70Q9NW82 654 aa11.42□□□□□ -0.58
AP3S1-202ENST00000395548 NCAPD3P42695 1498 aa11.42□□□□□ -0.58
AP3S1-202ENST00000395548 RIMBP3CA6NJZ7 1639 aa11.4□□□□□ -0.58
AP3S1-202ENST00000395548 RIMBP3BA6NNM3 1639 aa11.4□□□□□ -0.58
AP3S1-202ENST00000395548 RIMBP3Q9UFD9 1639 aa11.4□□□□□ -0.58
AP3S1-202ENST00000395548 MMRN1Q13201 1228 aa11.4□□□□□ -0.58
AP3S1-202ENST00000395548 ARHGAP33O14559 1287 aa11.39□□□□□ -0.59
AP3S1-202ENST00000395548 LSM11P83369 360 aaKnown RBP eCLIP11.38□□□□□ -0.59
AP3S1-202ENST00000395548 ANKRD13DQ6ZTN6 518 aa11.38□□□□□ -0.59
AP3S1-202ENST00000395548 ZNF454Q8N9F8 522 aa11.38□□□□□ -0.59
AP3S1-202ENST00000395548 SMARCA2P51531 1590 aa11.37□□□□□ -0.59
AP3S1-202ENST00000395548 DCAF1Q9Y4B6 1507 aa11.36□□□□□ -0.59
AP3S1-202ENST00000395548 KCNH8Q96L42 1107 aa11.36□□□□□ -0.59
AP3S1-202ENST00000395548 AXIN2Q9Y2T1 843 aa11.36□□□□□ -0.59
AP3S1-202ENST00000395548 PTGER2P43116 358 aa11.35□□□□□ -0.59
AP3S1-202ENST00000395548 FOSBP53539 338 aa11.35□□□□□ -0.59
AP3S1-202ENST00000395548 E2F4Q16254 413 aa11.35□□□□□ -0.59
AP3S1-202ENST00000395548 POTEEQ6S8J3 1075 aa11.35□□□□□ -0.59
AP3S1-202ENST00000395548 JPH4Q96JJ6 628 aa11.35□□□□□ -0.59
AP3S1-202ENST00000395548 DPYSL4O14531 572 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms