RNA–Protein interactions for RNA: ENST00000394892.2

ATG4A-205, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 935 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-205ENST00000394892 POGZQ7Z3K3 1410 aa14.4□□□□□ -0.1
ATG4A-205ENST00000394892 FYCO1Q9BQS8 1478 aa14.39□□□□□ -0.11
ATG4A-205ENST00000394892 PTPRMP28827 1452 aa14.38□□□□□ -0.11
ATG4A-205ENST00000394892 ZMYM4Q5VZL5 1548 aa14.38□□□□□ -0.11
ATG4A-205ENST00000394892 AFAP1Q8N556 730 aa14.38□□□□□ -0.11
ATG4A-205ENST00000394892 PHF23Q9BUL5 403 aaPredicted RBP14.38□□□□□ -0.11
ATG4A-205ENST00000394892 CCDC18Q5T9S5 1454 aa14.38□□□□□ -0.11
ATG4A-205ENST00000394892 ARHGEF40Q8TER5 1519 aa14.37□□□□□ -0.11
ATG4A-205ENST00000394892 ARHGEF12Q9NZN5 1544 aa14.36□□□□□ -0.11
ATG4A-205ENST00000394892 SIGLEC1Q9BZZ2 1709 aa14.36□□□□□ -0.11
ATG4A-205ENST00000394892 CEP162Q5TB80 1403 aa14.36□□□□□ -0.11
ATG4A-205ENST00000394892 ADAMTSL3P82987 1691 aa14.36□□□□□ -0.11
ATG4A-205ENST00000394892 CFAP74Q9C0B2 1584 aa14.35□□□□□ -0.11
ATG4A-205ENST00000394892 TRAPPC8Q9Y2L5 1435 aa14.33□□□□□ -0.11
ATG4A-205ENST00000394892 MAGI2Q86UL8 1455 aa14.33□□□□□ -0.12
ATG4A-205ENST00000394892 ARHGAP5Q13017 1502 aa14.33□□□□□ -0.12
ATG4A-205ENST00000394892 ZFYVE16Q7Z3T8 1539 aa14.33□□□□□ -0.12
ATG4A-205ENST00000394892 GPATCH8Q9UKJ3 1502 aaKnown RBP14.31□□□□□ -0.12
ATG4A-205ENST00000394892 BCORL1Q5H9F3 1711 aa14.3□□□□□ -0.12
ATG4A-205ENST00000394892 MYO5CQ9NQX4 1742 aa14.3□□□□□ -0.12
ATG4A-205ENST00000394892 ATP10AO60312 1499 aa14.3□□□□□ -0.12
ATG4A-205ENST00000394892 KDM5CP41229 1560 aa14.29□□□□□ -0.12
ATG4A-205ENST00000394892 MADDQ8WXG6 1647 aa14.29□□□□□ -0.12
ATG4A-205ENST00000394892 CDC42BPBQ9Y5S2 1711 aa14.29□□□□□ -0.12
ATG4A-205ENST00000394892 MLECQ14165 292 aa14.28□□□□□ -0.12
ATG4A-205ENST00000394892 ZNF518AQ6AHZ1 1483 aa14.28□□□□□ -0.12
ATG4A-205ENST00000394892 PREX2Q70Z35 1606 aa14.27□□□□□ -0.12
ATG4A-205ENST00000394892 ABCC1P33527 1531 aa14.27□□□□□ -0.12
ATG4A-205ENST00000394892 PLPPR3Q6T4P5 718 aa14.27□□□□□ -0.13
ATG4A-205ENST00000394892 MLH3Q9UHC1 1453 aa14.25□□□□□ -0.13
ATG4A-205ENST00000394892 C9orf84Q5VXU9 1444 aa14.25□□□□□ -0.13
ATG4A-205ENST00000394892 ZNF644Q9H582 1327 aaPredicted RBP14.25□□□□□ -0.13
ATG4A-205ENST00000394892 HNRNPMP52272 730 aaKnown RBP eCLIP14.25□□□□□ -0.13
ATG4A-205ENST00000394892 ZNF777Q9ULD5 760 aaPredicted RBP14.25□□□□□ -0.13
ATG4A-205ENST00000394892 LMTK3Q96Q04 1460 aa14.25□□□□□ -0.13
ATG4A-205ENST00000394892 MTUS2Q5JR59 1369 aa14.24□□□□□ -0.13
ATG4A-205ENST00000394892 SAMD9LQ8IVG5 1584 aa14.23□□□□□ -0.13
ATG4A-205ENST00000394892 DIP2CQ9Y2E4 1556 aa14.23□□□□□ -0.13
ATG4A-205ENST00000394892 CDC42BPAQ5VT25 1732 aa14.23□□□□□ -0.13
ATG4A-205ENST00000394892 CFDP1Q9UEE9 299 aaPredicted RBP14.22□□□□□ -0.13
ATG4A-205ENST00000394892 CCNB3Q8WWL7 1395 aa14.22□□□□□ -0.13
ATG4A-205ENST00000394892 HSPA2P54652 639 aa14.21□□□□□ -0.13
ATG4A-205ENST00000394892 RIMS1Q86UR5 1692 aaKnown RBP14.2□□□□□ -0.14
ATG4A-205ENST00000394892 ABCA6Q8N139 1617 aa14.2□□□□□ -0.14
ATG4A-205ENST00000394892 CEBPAP49715 358 aaPredicted RBP14.2□□□□□ -0.14
ATG4A-205ENST00000394892 KIAA1107Q9UPP5 1409 aa14.2□□□□□ -0.14
ATG4A-205ENST00000394892 SYCP2Q9BX26 1530 aa14.2□□□□□ -0.14
ATG4A-205ENST00000394892 TIAM1Q13009 1591 aa14.19□□□□□ -0.14
ATG4A-205ENST00000394892 VPS8Q8N3P4 1428 aa14.19□□□□□ -0.14
ATG4A-205ENST00000394892 ITSN2Q9NZM3 1697 aa14.19□□□□□ -0.14
ATG4A-205ENST00000394892 MBD5Q9P267 1494 aa14.18□□□□□ -0.14
ATG4A-205ENST00000394892 KANK4Q5T7N3 995 aaPredicted RBP14.18□□□□□ -0.14
ATG4A-205ENST00000394892 REREQ9P2R6 1566 aa14.17□□□□□ -0.14
ATG4A-205ENST00000394892 EHBP1L1Q8N3D4 1523 aa14.17□□□□□ -0.14
ATG4A-205ENST00000394892 MYT1LQ9UL68 1186 aa14.17□□□□□ -0.14
ATG4A-205ENST00000394892 KIDINS220Q9ULH0 1771 aa14.17□□□□□ -0.14
ATG4A-205ENST00000394892 SPAG9O60271 1321 aaKnown RBP14.16□□□□□ -0.14
ATG4A-205ENST00000394892 CERKQ8TCT0 537 aa14.16□□□□□ -0.14
ATG4A-205ENST00000394892 NCOA2Q15596 1464 aa14.16□□□□□ -0.14
ATG4A-205ENST00000394892 AGLP35573 1532 aa14.15□□□□□ -0.14
ATG4A-205ENST00000394892 DMRT2Q9Y5R5 561 aa14.15□□□□□ -0.14
ATG4A-205ENST00000394892 LRRC9Q6ZRR7 1453 aa14.12□□□□□ -0.15
ATG4A-205ENST00000394892 PLEKHH2Q8IVE3 1493 aa14.12□□□□□ -0.15
ATG4A-205ENST00000394892 ESF1Q9H501 851 aaKnown RBP14.11□□□□□ -0.15
ATG4A-205ENST00000394892 ATP7AQ04656 1500 aa14.1□□□□□ -0.15
ATG4A-205ENST00000394892 INO80Q9ULG1 1556 aaPredicted RBP14.09□□□□□ -0.15
ATG4A-205ENST00000394892 FER1L4A9Z1Z3 1794 aa14.09□□□□□ -0.15
ATG4A-205ENST00000394892 A2MP01023 1474 aa14.08□□□□□ -0.16
ATG4A-205ENST00000394892 PLXNC1O60486 1568 aa14.08□□□□□ -0.16
ATG4A-205ENST00000394892 CAMSAP2Q08AD1 1489 aa14.07□□□□□ -0.16
ATG4A-205ENST00000394892 MAP3K1Q13233 1512 aa14.07□□□□□ -0.16
ATG4A-205ENST00000394892 RTEL1-TNFRSF6BF6WH68 1400 aa14.06□□□□□ -0.16
ATG4A-205ENST00000394892 UHRF1BP1Q6BDS2 1440 aa14.06□□□□□ -0.16
ATG4A-205ENST00000394892 DHX29Q7Z478 1369 aaKnown RBP14.04□□□□□ -0.16
ATG4A-205ENST00000394892 SUPT6HQ7KZ85 1726 aaKnown RBP14.04□□□□□ -0.16
ATG4A-205ENST00000394892 ZMYM3Q14202 1370 aa14.03□□□□□ -0.16
ATG4A-205ENST00000394892 CCDC141Q6ZP82 1450 aa14.03□□□□□ -0.16
ATG4A-205ENST00000394892 PREX1Q8TCU6 1659 aa14.03□□□□□ -0.16
ATG4A-205ENST00000394892 GGT6Q6P531 493 aa14.02□□□□□ -0.17
ATG4A-205ENST00000394892 CNTLNQ9NXG0 1405 aa14.01□□□□□ -0.17
ATG4A-205ENST00000394892 MYOM3Q5VTT5 1437 aa14□□□□□ -0.17
ATG4A-205ENST00000394892 C3P01024 1663 aa14□□□□□ -0.17
ATG4A-205ENST00000394892 RSPH4AQ5TD94 716 aa13.99□□□□□ -0.17
ATG4A-205ENST00000394892 ARHGEF5Q12774 1597 aa13.99□□□□□ -0.17
ATG4A-205ENST00000394892 PTPRKQ15262 1439 aa13.98□□□□□ -0.17
ATG4A-205ENST00000394892 MIA2Q96PC5 1412 aa13.98□□□□□ -0.17
ATG4A-205ENST00000394892 DISP3Q9P2K9 1392 aa13.97□□□□□ -0.17
ATG4A-205ENST00000394892 KIF3BO15066 747 aa13.97□□□□□ -0.17
ATG4A-205ENST00000394892 PPP6R1Q9UPN7 881 aa13.96□□□□□ -0.17
ATG4A-205ENST00000394892 PTPRTO14522 1441 aa13.96□□□□□ -0.18
ATG4A-205ENST00000394892 NPATQ14207 1427 aa13.96□□□□□ -0.18
ATG4A-205ENST00000394892 SETD1BQ9UPS6 1966 aaKnown RBP13.94□□□□□ -0.18
ATG4A-205ENST00000394892 ABCC5O15440 1437 aa13.94□□□□□ -0.18
ATG4A-205ENST00000394892 TSPY4P0CV99 314 aa13.94□□□□□ -0.18
ATG4A-205ENST00000394892 TSPY10P0CW01 314 aa13.94□□□□□ -0.18
ATG4A-205ENST00000394892 FBXO31Q5XUX0 539 aaPredicted RBP13.94□□□□□ -0.18
ATG4A-205ENST00000394892 ADGBQ8N7X0 1667 aa13.94□□□□□ -0.18
ATG4A-205ENST00000394892 CLTCQ00610 1675 aaKnown RBP13.92□□□□□ -0.18
ATG4A-205ENST00000394892 STRCQ7RTU9 1775 aa13.92□□□□□ -0.18
ATG4A-205ENST00000394892 MAST1Q9Y2H9 1570 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms