RNA–Protein interactions for RNA: ENST00000394768.6

SYNE2-205, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 11,095 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-205ENST00000394768 GBP4Q96PP9 640 aa9.36□□□□□ -0.91
SYNE2-205ENST00000394768 HDGFL2Q7Z4V5 671 aaPredicted RBP9.36□□□□□ -0.91
SYNE2-205ENST00000394768 PHF14O94880 888 aa9.35□□□□□ -0.91
SYNE2-205ENST00000394768 U2SURPO15042 1029 aaKnown RBP9.35□□□□□ -0.91
SYNE2-205ENST00000394768 BAZ1BQ9UIG0 1483 aaKnown RBP9.35□□□□□ -0.91
SYNE2-205ENST00000394768 TAOK2Q9UL54 1235 aa9.35□□□□□ -0.91
SYNE2-205ENST00000394768 GORABQ5T7V8 394 aa9.35□□□□□ -0.91
SYNE2-205ENST00000394768 CCNB3Q8WWL7 1395 aa9.35□□□□□ -0.91
SYNE2-205ENST00000394768 LRRFIP1Q32MZ4 808 aaKnown RBP9.34□□□□□ -0.91
SYNE2-205ENST00000394768 RGL3Q3MIN7 710 aa9.34□□□□□ -0.91
SYNE2-205ENST00000394768 FRAT1Q92837 279 aaPredicted RBP9.34□□□□□ -0.91
SYNE2-205ENST00000394768 TPRNQ4KMQ1 711 aa9.34□□□□□ -0.91
SYNE2-205ENST00000394768 RASSF8Q8NHQ8 419 aa9.34□□□□□ -0.91
SYNE2-205ENST00000394768 TPM3P06753 285 aa9.34□□□□□ -0.91
SYNE2-205ENST00000394768 RRP7BPQ9NSQ0 103 aa9.34□□□□□ -0.91
SYNE2-205ENST00000394768 TCEAL9Q9UHQ7 104 aa9.34□□□□□ -0.91
SYNE2-205ENST00000394768 TRHP20396 242 aaPredicted RBP9.34□□□□□ -0.91
SYNE2-205ENST00000394768 SRPK2P78362 688 aaKnown RBP9.33□□□□□ -0.92
SYNE2-205ENST00000394768 SETQ01105 290 aaPredicted RBP9.33□□□□□ -0.92
SYNE2-205ENST00000394768 NACADO15069 1562 aa9.33□□□□□ -0.92
SYNE2-205ENST00000394768 TPM2P07951 284 aa9.33□□□□□ -0.92
SYNE2-205ENST00000394768 HMMRO75330 724 aa9.33□□□□□ -0.92
SYNE2-205ENST00000394768 CEP164Q9UPV0 1460 aa9.33□□□□□ -0.92
SYNE2-205ENST00000394768 CCDC70Q6NSX1 233 aa9.33□□□□□ -0.92
SYNE2-205ENST00000394768 TAF7LQ5H9L4 462 aa9.32□□□□□ -0.92
SYNE2-205ENST00000394768 AMOTL1Q8IY63 956 aa9.32□□□□□ -0.92
SYNE2-205ENST00000394768 TSR1Q2NL82 804 aaKnown RBP9.32□□□□□ -0.92
SYNE2-205ENST00000394768 DCAF8L1A6NGE4 600 aa9.32□□□□□ -0.92
SYNE2-205ENST00000394768 CSB-PGBD3P0DP91 1061 aa9.31□□□□□ -0.92
SYNE2-205ENST00000394768 NEUROD2Q15784 382 aa9.31□□□□□ -0.92
SYNE2-205ENST00000394768 STK31Q9BXU1 1019 aa9.31□□□□□ -0.92
SYNE2-205ENST00000394768 LMOD3Q0VAK6 560 aa9.3□□□□□ -0.92
SYNE2-205ENST00000394768 WASHC2AQ641Q2 1341 aa9.3□□□□□ -0.92
SYNE2-205ENST00000394768 CARMIL2Q6F5E8 1435 aa9.29□□□□□ -0.92
SYNE2-205ENST00000394768 TPM1P09493 284 aa9.29□□□□□ -0.92
SYNE2-205ENST00000394768 PPP4R2Q9NY27 417 aa9.29□□□□□ -0.92
SYNE2-205ENST00000394768 MORC1Q86VD1 984 aa9.29□□□□□ -0.92
SYNE2-205ENST00000394768 TNNT3P45378 269 aaPredicted RBP9.29□□□□□ -0.92
SYNE2-205ENST00000394768 WWC1Q8IX03 1113 aa9.29□□□□□ -0.92
SYNE2-205ENST00000394768 EID1Q9Y6B2 187 aa9.28□□□□□ -0.92
SYNE2-205ENST00000394768 MARCH6O60337 910 aa9.28□□□□□ -0.92
SYNE2-205ENST00000394768 RGS3P49796 1198 aa9.28□□□□□ -0.92
SYNE2-205ENST00000394768 KTN1Q86UP2 1357 aaKnown RBP9.28□□□□□ -0.92
SYNE2-205ENST00000394768 NOL10Q9BSC4 688 aaKnown RBP9.28□□□□□ -0.92
SYNE2-205ENST00000394768 TRIM34Q9BYJ4 488 aa9.28□□□□□ -0.92
SYNE2-205ENST00000394768 AEBP2Q6ZN18 517 aaPredicted RBP9.27□□□□□ -0.93
SYNE2-205ENST00000394768 CNKSR2Q8WXI2 1034 aa9.27□□□□□ -0.93
SYNE2-205ENST00000394768 TIMELESSQ9UNS1 1208 aa9.27□□□□□ -0.93
SYNE2-205ENST00000394768 VPS53Q5VIR6 699 aa9.27□□□□□ -0.93
SYNE2-205ENST00000394768 NOP58Q9Y2X3 529 aaKnown RBP9.27□□□□□ -0.93
SYNE2-205ENST00000394768 HSP90B1P14625 803 aaKnown RBP9.27□□□□□ -0.93
SYNE2-205ENST00000394768 CTDP1Q9Y5B0 961 aaPredicted RBP9.27□□□□□ -0.93
SYNE2-205ENST00000394768 GTF2E1P29083 439 aaPredicted RBP9.26□□□□□ -0.93
SYNE2-205ENST00000394768 GPS2Q13227 327 aa9.26□□□□□ -0.93
SYNE2-205ENST00000394768 RWDD1Q9H446 243 aaPredicted RBP9.26□□□□□ -0.93
SYNE2-205ENST00000394768 ATP6V1DQ9Y5K8 247 aa9.26□□□□□ -0.93
SYNE2-205ENST00000394768 FOXD1Q16676 465 aa9.26□□□□□ -0.93
SYNE2-205ENST00000394768 FRAT2O75474 233 aaPredicted RBP9.26□□□□□ -0.93
SYNE2-205ENST00000394768 WRNQ14191 1432 aaPredicted RBP eCLIP9.26□□□□□ -0.93
SYNE2-205ENST00000394768 TERF2IPQ9NYB0 399 aa9.25□□□□□ -0.93
SYNE2-205ENST00000394768 CCDC9Q9Y3X0 531 aaKnown RBP9.25□□□□□ -0.93
SYNE2-205ENST00000394768 RDXP35241 583 aaKnown RBP9.25□□□□□ -0.93
SYNE2-205ENST00000394768 EIF4G1Q04637 1599 aaKnown RBP9.25□□□□□ -0.93
SYNE2-205ENST00000394768 TCERG1O14776 1098 aaKnown RBP9.25□□□□□ -0.93
SYNE2-205ENST00000394768 KIF16BQ96L93 1317 aa9.25□□□□□ -0.93
SYNE2-205ENST00000394768 PAK3O75914 559 aaPredicted RBP9.25□□□□□ -0.93
SYNE2-205ENST00000394768 PHLDB1Q86UU1 1377 aa9.24□□□□□ -0.93
SYNE2-205ENST00000394768 CHMP3Q9Y3E7 222 aa9.24□□□□□ -0.93
SYNE2-205ENST00000394768 AKAP17AQ02040 695 aaKnown RBP9.24□□□□□ -0.93
SYNE2-205ENST00000394768 ANKRD20A12PQ8NF67 263 aa9.24□□□□□ -0.93
SYNE2-205ENST00000394768 IPO7O95373 1038 aaKnown RBP9.24□□□□□ -0.93
SYNE2-205ENST00000394768 CCDC47Q96A33 483 aaKnown RBP9.24□□□□□ -0.93
SYNE2-205ENST00000394768 HOOK1Q9UJC3 728 aaKnown RBP9.24□□□□□ -0.93
SYNE2-205ENST00000394768 PMFBP1Q8TBY8 1022 aa9.23□□□□□ -0.93
SYNE2-205ENST00000394768 SENP3Q9H4L4 574 aaPredicted RBP9.23□□□□□ -0.93
SYNE2-205ENST00000394768 ZNF330Q9Y3S2 320 aaPredicted RBP9.23□□□□□ -0.93
SYNE2-205ENST00000394768 SMC4Q9NTJ3 1288 aa9.23□□□□□ -0.93
SYNE2-205ENST00000394768 TPD52L1Q16890 204 aaPredicted RBP9.23□□□□□ -0.93
SYNE2-205ENST00000394768 UACAQ9BZF9 1416 aa9.23□□□□□ -0.93
SYNE2-205ENST00000394768 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.22□□□□□ -0.93
SYNE2-205ENST00000394768 ARHGAP35Q9NRY4 1499 aa9.22□□□□□ -0.93
SYNE2-205ENST00000394768 ST18O60284 1047 aa9.22□□□□□ -0.93
SYNE2-205ENST00000394768 IRX6P78412 446 aaPredicted RBP9.22□□□□□ -0.93
SYNE2-205ENST00000394768 CDR1P51861 262 aa9.22□□□□□ -0.93
SYNE2-205ENST00000394768 CPLX2Q6PUV4 134 aaKnown RBP9.21□□□□□ -0.93
SYNE2-205ENST00000394768 CWC22Q9HCG8 908 aaKnown RBP9.21□□□□□ -0.93
SYNE2-205ENST00000394768 CC2D1BQ5T0F9 858 aaKnown RBP9.21□□□□□ -0.94
SYNE2-205ENST00000394768 SYNE3Q6ZMZ3 975 aa9.21□□□□□ -0.94
SYNE2-205ENST00000394768 CCDC43Q96MW1 224 aaKnown RBP9.21□□□□□ -0.94
SYNE2-205ENST00000394768 RALBP1Q15311 655 aa9.2□□□□□ -0.94
SYNE2-205ENST00000394768 HMGB2P26583 209 aaKnown RBP9.2□□□□□ -0.94
SYNE2-205ENST00000394768 CALRP27797 417 aaKnown RBP9.2□□□□□ -0.94
SYNE2-205ENST00000394768 RRP12Q5JTH9 1297 aaKnown RBP9.2□□□□□ -0.94
SYNE2-205ENST00000394768 DCAF11Q8TEB1 546 aa9.19□□□□□ -0.94
SYNE2-205ENST00000394768 SF3A1Q15459 793 aaKnown RBP9.19□□□□□ -0.94
SYNE2-205ENST00000394768 BAZ1AQ9NRL2 1556 aaPredicted RBP9.19□□□□□ -0.94
SYNE2-205ENST00000394768 TRIM6-TRIM34B2RNG4 842 aa9.18□□□□□ -0.94
SYNE2-205ENST00000394768 ITPRIPQ8IWB1 547 aa9.18□□□□□ -0.94
SYNE2-205ENST00000394768 ROCK2O75116 1388 aaKnown RBP9.18□□□□□ -0.94
SYNE2-205ENST00000394768 SOX12O15370 315 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms