RNA–Protein interactions for RNA: ENST00000394609.6

RTN4-205, Transcript of reticulon 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN4, Length 1,898 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-205ENST00000394609 KIF12Q96FN5 646 aa10.71□□□□□ -0.69
RTN4-205ENST00000394609 SNAPC4Q5SXM2 1469 aa10.71□□□□□ -0.69
RTN4-205ENST00000394609 EIF4G3O43432 1585 aaKnown RBP10.71□□□□□ -0.7
RTN4-205ENST00000394609 PBRM1Q86U86 1689 aa10.7□□□□□ -0.7
RTN4-205ENST00000394609 C7P10643 843 aa10.7□□□□□ -0.7
RTN4-205ENST00000394609 FKBP8Q14318 412 aa10.7□□□□□ -0.7
RTN4-205ENST00000394609 CHMP7Q8WUX9 453 aaPredicted RBP10.69□□□□□ -0.7
RTN4-205ENST00000394609 ADAMTS12P58397 1594 aa10.68□□□□□ -0.7
RTN4-205ENST00000394609 RASEFQ8IZ41 740 aa10.68□□□□□ -0.7
RTN4-205ENST00000394609 METRNQ9UJH8 293 aa10.68□□□□□ -0.7
RTN4-205ENST00000394609 FHOD3Q2V2M9 1422 aa10.67□□□□□ -0.7
RTN4-205ENST00000394609 ATP1B4Q9UN42 357 aaPredicted RBP10.66□□□□□ -0.7
RTN4-205ENST00000394609 MAGI1Q96QZ7 1491 aaPredicted RBP10.65□□□□□ -0.71
RTN4-205ENST00000394609 KANK4Q5T7N3 995 aaPredicted RBP10.64□□□□□ -0.71
RTN4-205ENST00000394609 GRIN2AQ12879 1464 aa10.64□□□□□ -0.71
RTN4-205ENST00000394609 OTUD5Q96G74 571 aa10.64□□□□□ -0.71
RTN4-205ENST00000394609 TIE1P35590 1138 aa10.63□□□□□ -0.71
RTN4-205ENST00000394609 SGIP1Q9BQI5 828 aa10.63□□□□□ -0.71
RTN4-205ENST00000394609 CTTNBP2Q8WZ74 1663 aa10.63□□□□□ -0.71
RTN4-205ENST00000394609 MAMSTRQ6ZN01 415 aa10.62□□□□□ -0.71
RTN4-205ENST00000394609 SYNJ2O15056 1496 aa10.62□□□□□ -0.71
RTN4-205ENST00000394609 POTEB2H3BUK9 544 aa10.61□□□□□ -0.71
RTN4-205ENST00000394609 MAP3K13O43283 966 aa10.61□□□□□ -0.71
RTN4-205ENST00000394609 FBXO3Q9UK99 471 aa10.61□□□□□ -0.71
RTN4-205ENST00000394609 EFCAB5A4FU69 1503 aa10.61□□□□□ -0.71
RTN4-205ENST00000394609 ATN1P54259 1190 aaPredicted RBP10.6□□□□□ -0.71
RTN4-205ENST00000394609 NUBP1P53384 320 aa10.59□□□□□ -0.71
RTN4-205ENST00000394609 FAM212AQ96EL1 285 aa10.59□□□□□ -0.71
RTN4-205ENST00000394609 BMP2KQ9NSY1 1161 aaPredicted RBP10.59□□□□□ -0.71
RTN4-205ENST00000394609 KIAA0586Q9BVV6 1533 aa10.59□□□□□ -0.71
RTN4-205ENST00000394609 IQGAP2Q13576 1575 aa10.59□□□□□ -0.71
RTN4-205ENST00000394609 FMN1Q68DA7 1419 aa10.56□□□□□ -0.72
RTN4-205ENST00000394609 SAMD9Q5K651 1589 aa10.56□□□□□ -0.72
RTN4-205ENST00000394609 JPH4Q96JJ6 628 aa10.55□□□□□ -0.72
RTN4-205ENST00000394609 CEP170Q5SW79 1584 aa10.55□□□□□ -0.72
RTN4-205ENST00000394609 CASKIN1Q8WXD9 1431 aa10.55□□□□□ -0.72
RTN4-205ENST00000394609 PCF11O94913 1555 aaKnown RBP10.55□□□□□ -0.72
RTN4-205ENST00000394609 PCDHB13Q9Y5F0 798 aa10.55□□□□□ -0.72
RTN4-205ENST00000394609 NUP160Q12769 1436 aa10.54□□□□□ -0.72
RTN4-205ENST00000394609 UGGT2Q9NYU1 1516 aa10.53□□□□□ -0.72
RTN4-205ENST00000394609 SCUBE2Q9NQ36 999 aa10.53□□□□□ -0.72
RTN4-205ENST00000394609 ARID3CA6NKF2 412 aa10.53□□□□□ -0.72
RTN4-205ENST00000394609 DISP1Q96F81 1524 aa10.52□□□□□ -0.72
RTN4-205ENST00000394609 FYCO1Q9BQS8 1478 aa10.52□□□□□ -0.73
RTN4-205ENST00000394609 TRPC6Q9Y210 931 aa10.52□□□□□ -0.73
RTN4-205ENST00000394609 TIAM1Q13009 1591 aa10.51□□□□□ -0.73
RTN4-205ENST00000394609 TTLL13PA6NNM8 815 aa10.51□□□□□ -0.73
RTN4-205ENST00000394609 LRRC9Q6ZRR7 1453 aa10.5□□□□□ -0.73
RTN4-205ENST00000394609 MAP3K1Q13233 1512 aa10.5□□□□□ -0.73
RTN4-205ENST00000394609 IER5LQ5T953 404 aa10.49□□□□□ -0.73
RTN4-205ENST00000394609 SEC24BO95487 1268 aa10.48□□□□□ -0.73
RTN4-205ENST00000394609 KIAA0556O60303 1618 aa10.47□□□□□ -0.73
RTN4-205ENST00000394609 CARMIL2Q6F5E8 1435 aa10.47□□□□□ -0.73
RTN4-205ENST00000394609 MTUS2Q5JR59 1369 aa10.46□□□□□ -0.73
RTN4-205ENST00000394609 POTEJP0CG39 1038 aa10.46□□□□□ -0.74
RTN4-205ENST00000394609 ZEB1P37275 1124 aaPredicted RBP10.46□□□□□ -0.74
RTN4-205ENST00000394609 DCAF8Q5TAQ9 597 aa10.46□□□□□ -0.74
RTN4-205ENST00000394609 PRG4Q92954 1404 aaPredicted RBP10.45□□□□□ -0.74
RTN4-205ENST00000394609 PHLDB1Q86UU1 1377 aa10.45□□□□□ -0.74
RTN4-205ENST00000394609 IFNL1Q8IU54 200 aa10.44□□□□□ -0.74
RTN4-205ENST00000394609 TRIM35Q9UPQ4 493 aa10.44□□□□□ -0.74
RTN4-205ENST00000394609 CHD1O14646 1710 aa10.44□□□□□ -0.74
RTN4-205ENST00000394609 ITGAEP38570 1179 aa10.44□□□□□ -0.74
RTN4-205ENST00000394609 CCNB3Q8WWL7 1395 aa10.44□□□□□ -0.74
RTN4-205ENST00000394609 PLB1Q6P1J6 1458 aa10.43□□□□□ -0.74
RTN4-205ENST00000394609 CFAP43Q8NDM7 1665 aa10.42□□□□□ -0.74
RTN4-205ENST00000394609 POTEFA5A3E0 1075 aa10.42□□□□□ -0.74
RTN4-205ENST00000394609 RRBP1Q9P2E9 1410 aaKnown RBP10.42□□□□□ -0.74
RTN4-205ENST00000394609 EPRSP07814 1512 aaKnown RBP10.42□□□□□ -0.74
RTN4-205ENST00000394609 MYT1Q01538 1121 aa10.42□□□□□ -0.74
RTN4-205ENST00000394609 FAM50AQ14320 339 aaKnown RBP10.42□□□□□ -0.74
RTN4-205ENST00000394609 TMEM106CQ9BVX2 250 aa10.42□□□□□ -0.74
RTN4-205ENST00000394609 CDK13Q14004 1512 aaKnown RBP10.42□□□□□ -0.74
RTN4-205ENST00000394609 CCER1Q8TC90 406 aaPredicted RBP10.41□□□□□ -0.74
RTN4-205ENST00000394609 NUP153P49790 1475 aaKnown RBP10.4□□□□□ -0.74
RTN4-205ENST00000394609 CCDC18Q5T9S5 1454 aa10.4□□□□□ -0.74
RTN4-205ENST00000394609 LRRIQ1Q96JM4 1722 aa10.4□□□□□ -0.74
RTN4-205ENST00000394609 HECW1Q76N89 1606 aa10.4□□□□□ -0.74
RTN4-205ENST00000394609 PTPRGP23470 1445 aa10.4□□□□□ -0.74
RTN4-205ENST00000394609 POTEMA6NI47 508 aa10.4□□□□□ -0.75
RTN4-205ENST00000394609 VASPP50552 380 aaPredicted RBP10.4□□□□□ -0.75
RTN4-205ENST00000394609 GSE1Q14687 1217 aa10.4□□□□□ -0.75
RTN4-205ENST00000394609 KLHL34Q8N239 644 aa10.4□□□□□ -0.75
RTN4-205ENST00000394609 MAGI3Q5TCQ9 1506 aa10.39□□□□□ -0.75
RTN4-205ENST00000394609 POTEGQ6S5H5 508 aa10.38□□□□□ -0.75
RTN4-205ENST00000394609 COLQQ9Y215 455 aaPredicted RBP10.38□□□□□ -0.75
RTN4-205ENST00000394609 NCOA2Q15596 1464 aa10.37□□□□□ -0.75
RTN4-205ENST00000394609 RAPGEF6Q8TEU7 1601 aa10.37□□□□□ -0.75
RTN4-205ENST00000394609 PYGBP11216 843 aa10.36□□□□□ -0.75
RTN4-205ENST00000394609 PCDH10Q9P2E7 1040 aa10.36□□□□□ -0.75
RTN4-205ENST00000394609 CDK11AQ9UQ88 783 aaPredicted RBP10.36□□□□□ -0.75
RTN4-205ENST00000394609 ERCC6L2Q5T890 1561 aa10.36□□□□□ -0.75
RTN4-205ENST00000394609 PLCG2P16885 1265 aa10.36□□□□□ -0.75
RTN4-205ENST00000394609 PLSCR2Q9NRY7 297 aa10.35□□□□□ -0.75
RTN4-205ENST00000394609 EHBP1L1Q8N3D4 1523 aa10.35□□□□□ -0.75
RTN4-205ENST00000394609 CLASP1Q7Z460 1538 aa10.34□□□□□ -0.75
RTN4-205ENST00000394609 FGD6Q6ZV73 1430 aa10.34□□□□□ -0.75
RTN4-205ENST00000394609 SHROOM2Q13796 1616 aa10.33□□□□□ -0.76
RTN4-205ENST00000394609 MYOM3Q5VTT5 1437 aa10.32□□□□□ -0.76
RTN4-205ENST00000394609 PLEKHD1A6NEE1 506 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms