RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 CCDC7Q96M83 1385 aa13.81□□□□□ -0.2
COL17A1-203ENST00000393211 CDK13Q14004 1512 aaKnown RBP13.8□□□□□ -0.2
COL17A1-203ENST00000393211 TEX14Q8IWB6 1497 aa13.8□□□□□ -0.2
COL17A1-203ENST00000393211 L3MBTL2Q969R5 705 aa13.79□□□□□ -0.2
COL17A1-203ENST00000393211 CHIC2Q9UKJ5 165 aa13.79□□□□□ -0.2
COL17A1-203ENST00000393211 KIAA0586Q9BVV6 1533 aa13.78□□□□□ -0.2
COL17A1-203ENST00000393211 ABCC5O15440 1437 aa13.77□□□□□ -0.2
COL17A1-203ENST00000393211 SPATA31E1Q6ZUB1 1445 aa13.77□□□□□ -0.2
COL17A1-203ENST00000393211 FANCIQ9NVI1 1328 aa13.77□□□□□ -0.2
COL17A1-203ENST00000393211 PRKRIP1Q9H875 184 aaPredicted RBP13.77□□□□□ -0.21
COL17A1-203ENST00000393211 MRC2Q9UBG0 1479 aa13.77□□□□□ -0.21
COL17A1-203ENST00000393211 KIAA0556O60303 1618 aa13.77□□□□□ -0.21
COL17A1-203ENST00000393211 CDK11AQ9UQ88 783 aaPredicted RBP13.76□□□□□ -0.21
COL17A1-203ENST00000393211 ZBED9Q6R2W3 1325 aa13.76□□□□□ -0.21
COL17A1-203ENST00000393211 PPP4R2Q9NY27 417 aa13.75□□□□□ -0.21
COL17A1-203ENST00000393211 RAPGEF6Q8TEU7 1601 aa13.75□□□□□ -0.21
COL17A1-203ENST00000393211 IFT140Q96RY7 1462 aa13.74□□□□□ -0.21
COL17A1-203ENST00000393211 ADGBQ8N7X0 1667 aa13.74□□□□□ -0.21
COL17A1-203ENST00000393211 ITSN2Q9NZM3 1697 aa13.74□□□□□ -0.21
COL17A1-203ENST00000393211 DISP1Q96F81 1524 aa13.73□□□□□ -0.21
COL17A1-203ENST00000393211 NUP153P49790 1475 aaKnown RBP13.73□□□□□ -0.21
COL17A1-203ENST00000393211 ARID4BQ4LE39 1312 aaPredicted RBP13.73□□□□□ -0.21
COL17A1-203ENST00000393211 ADGRL2O95490 1459 aa13.71□□□□□ -0.21
COL17A1-203ENST00000393211 ADCY10Q96PN6 1610 aa13.71□□□□□ -0.21
COL17A1-203ENST00000393211 MBD5Q9P267 1494 aa13.7□□□□□ -0.22
COL17A1-203ENST00000393211 NBPF8Q3BBV2 869 aa13.7□□□□□ -0.22
COL17A1-203ENST00000393211 PZPP20742 1482 aa13.69□□□□□ -0.22
COL17A1-203ENST00000393211 C11orf95C9JLR9 678 aaPredicted RBP13.69□□□□□ -0.22
COL17A1-203ENST00000393211 MRS2Q9HD23 443 aa13.69□□□□□ -0.22
COL17A1-203ENST00000393211 TROQ12816 1431 aaPredicted RBP13.69□□□□□ -0.22
COL17A1-203ENST00000393211 KIF7Q2M1P5 1343 aa13.69□□□□□ -0.22
COL17A1-203ENST00000393211 SLC4A1APQ9BWU0 796 aaKnown RBP13.68□□□□□ -0.22
COL17A1-203ENST00000393211 CROCC2H7BZ55 1655 aa13.68□□□□□ -0.22
COL17A1-203ENST00000393211 KIAA1107Q9UPP5 1409 aa13.67□□□□□ -0.22
COL17A1-203ENST00000393211 KIF14Q15058 1648 aa13.67□□□□□ -0.22
COL17A1-203ENST00000393211 CAMSAP2Q08AD1 1489 aa13.67□□□□□ -0.22
COL17A1-203ENST00000393211 GRIN2AQ12879 1464 aa13.66□□□□□ -0.22
COL17A1-203ENST00000393211 CCDC184Q52MB2 194 aa13.65□□□□□ -0.22
COL17A1-203ENST00000393211 ROCK2O75116 1388 aaKnown RBP13.65□□□□□ -0.22
COL17A1-203ENST00000393211 SMG6Q86US8 1419 aaKnown RBP13.65□□□□□ -0.22
COL17A1-203ENST00000393211 FOXD1Q16676 465 aa13.64□□□□□ -0.23
COL17A1-203ENST00000393211 UHRF1BP1Q6BDS2 1440 aa13.64□□□□□ -0.23
COL17A1-203ENST00000393211 GPATCH8Q9UKJ3 1502 aaKnown RBP13.63□□□□□ -0.23
COL17A1-203ENST00000393211 FAM9BQ8IZU0 186 aa13.63□□□□□ -0.23
COL17A1-203ENST00000393211 DHX29Q7Z478 1369 aaKnown RBP13.63□□□□□ -0.23
COL17A1-203ENST00000393211 ANKRD30AQ9BXX3 1397 aa13.63□□□□□ -0.23
COL17A1-203ENST00000393211 ARHGEF12Q9NZN5 1544 aa13.62□□□□□ -0.23
COL17A1-203ENST00000393211 SHANK2Q9UPX8 1470 aa13.62□□□□□ -0.23
COL17A1-203ENST00000393211 KDM5CP41229 1560 aa13.62□□□□□ -0.23
COL17A1-203ENST00000393211 CFDP1Q9UEE9 299 aaPredicted RBP13.61□□□□□ -0.23
COL17A1-203ENST00000393211 MYT1LQ9UL68 1186 aa13.61□□□□□ -0.23
COL17A1-203ENST00000393211 ZNF644Q9H582 1327 aaPredicted RBP13.61□□□□□ -0.23
COL17A1-203ENST00000393211 MAGI1Q96QZ7 1491 aaPredicted RBP13.61□□□□□ -0.23
COL17A1-203ENST00000393211 MSH5O43196 834 aa13.61□□□□□ -0.23
COL17A1-203ENST00000393211 IRX6P78412 446 aaPredicted RBP13.61□□□□□ -0.23
COL17A1-203ENST00000393211 KDM5DQ9BY66 1539 aa13.61□□□□□ -0.23
COL17A1-203ENST00000393211 SENP3Q9H4L4 574 aaPredicted RBP13.61□□□□□ -0.23
COL17A1-203ENST00000393211 ZNF608Q9ULD9 1512 aaPredicted RBP13.61□□□□□ -0.23
COL17A1-203ENST00000393211 RALGAPBQ86X10 1494 aa13.6□□□□□ -0.23
COL17A1-203ENST00000393211 KTN1Q86UP2 1357 aaKnown RBP13.6□□□□□ -0.23
COL17A1-203ENST00000393211 USP47Q96K76 1375 aa13.6□□□□□ -0.23
COL17A1-203ENST00000393211 RNF123Q5XPI4 1314 aa13.6□□□□□ -0.23
COL17A1-203ENST00000393211 BCORL1Q5H9F3 1711 aa13.59□□□□□ -0.23
COL17A1-203ENST00000393211 EIF4G3O43432 1585 aaKnown RBP13.59□□□□□ -0.23
COL17A1-203ENST00000393211 PRG4Q92954 1404 aaPredicted RBP13.58□□□□□ -0.23
COL17A1-203ENST00000393211 CARMIL2Q6F5E8 1435 aa13.58□□□□□ -0.24
COL17A1-203ENST00000393211 ERICH6Q7L0X2 663 aa13.57□□□□□ -0.24
COL17A1-203ENST00000393211 NUDCQ9Y266 331 aa13.57□□□□□ -0.24
COL17A1-203ENST00000393211 ANKRD50Q9ULJ7 1429 aa13.56□□□□□ -0.24
COL17A1-203ENST00000393211 ARID3CA6NKF2 412 aa13.56□□□□□ -0.24
COL17A1-203ENST00000393211 SYNJ2O15056 1496 aa13.55□□□□□ -0.24
COL17A1-203ENST00000393211 PKD2Q13563 968 aa13.54□□□□□ -0.24
COL17A1-203ENST00000393211 CDC42BPAQ5VT25 1732 aa13.54□□□□□ -0.24
COL17A1-203ENST00000393211 CEP170Q5SW79 1584 aa13.54□□□□□ -0.24
COL17A1-203ENST00000393211 ARHGEF5Q12774 1597 aa13.53□□□□□ -0.24
COL17A1-203ENST00000393211 KIF15Q9NS87 1388 aa13.53□□□□□ -0.24
COL17A1-203ENST00000393211 ABCC10Q5T3U5 1492 aa13.52□□□□□ -0.24
COL17A1-203ENST00000393211 PLB1Q6P1J6 1458 aa13.52□□□□□ -0.24
COL17A1-203ENST00000393211 PTPRGP23470 1445 aa13.52□□□□□ -0.24
COL17A1-203ENST00000393211 NUP160Q12769 1436 aa13.52□□□□□ -0.24
COL17A1-203ENST00000393211 ABCA8O94911 1581 aa13.52□□□□□ -0.25
COL17A1-203ENST00000393211 B4GALNT3Q6L9W6 998 aa13.51□□□□□ -0.25
COL17A1-203ENST00000393211 BRD4O60885 1362 aaPredicted RBP13.51□□□□□ -0.25
COL17A1-203ENST00000393211 C9orf84Q5VXU9 1444 aa13.51□□□□□ -0.25
COL17A1-203ENST00000393211 LRPPRCP42704 1394 aaKnown RBP13.5□□□□□ -0.25
COL17A1-203ENST00000393211 PNISRQ8TF01 805 aaKnown RBP13.5□□□□□ -0.25
COL17A1-203ENST00000393211 E9PCH4 1651 aa13.5□□□□□ -0.25
COL17A1-203ENST00000393211 RALBP1Q15311 655 aa13.5□□□□□ -0.25
COL17A1-203ENST00000393211 NUP155O75694 1391 aa13.49□□□□□ -0.25
COL17A1-203ENST00000393211 BCL11AQ9H165 835 aa13.49□□□□□ -0.25
COL17A1-203ENST00000393211 PLEKHD1A6NEE1 506 aa13.48□□□□□ -0.25
COL17A1-203ENST00000393211 TMC1Q8TDI8 760 aa13.47□□□□□ -0.25
COL17A1-203ENST00000393211 ERCC6Q03468 1493 aa13.47□□□□□ -0.25
COL17A1-203ENST00000393211 MYBBP1AQ9BQG0 1328 aaKnown RBP13.47□□□□□ -0.25
COL17A1-203ENST00000393211 CHMP7Q8WUX9 453 aaPredicted RBP13.46□□□□□ -0.25
COL17A1-203ENST00000393211 CARD11Q9BXL7 1154 aa13.46□□□□□ -0.25
COL17A1-203ENST00000393211 INSRP06213 1382 aa13.46□□□□□ -0.25
COL17A1-203ENST00000393211 TSPY4P0CV99 314 aa13.46□□□□□ -0.26
COL17A1-203ENST00000393211 TSPY10P0CW01 314 aa13.46□□□□□ -0.26
COL17A1-203ENST00000393211 RSPH4AQ5TD94 716 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms