RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 KANK1Q14678 1352 aa14.31□□□□□ -0.12
COL6A3-205ENST00000392004 SCAPERQ9BY12 1400 aa14.31□□□□□ -0.12
COL6A3-205ENST00000392004 MIER1Q8N108 512 aa14.31□□□□□ -0.12
COL6A3-205ENST00000392004 BIVM-ERCC5R4GMW8 1640 aa14.3□□□□□ -0.12
COL6A3-205ENST00000392004 RAB3GAP2Q9H2M9 1393 aa14.3□□□□□ -0.12
COL6A3-205ENST00000392004 CASKIN1Q8WXD9 1431 aa14.29□□□□□ -0.12
COL6A3-205ENST00000392004 POGKQ9P215 609 aa14.27□□□□□ -0.13
COL6A3-205ENST00000392004 ARHGAP5Q13017 1502 aa14.26□□□□□ -0.13
COL6A3-205ENST00000392004 SOX12O15370 315 aa14.26□□□□□ -0.13
COL6A3-205ENST00000392004 CEBPAP49715 358 aaPredicted RBP14.26□□□□□ -0.13
COL6A3-205ENST00000392004 ARHGEF11O15085 1522 aa14.26□□□□□ -0.13
COL6A3-205ENST00000392004 CD109Q6YHK3 1445 aa14.26□□□□□ -0.13
COL6A3-205ENST00000392004 RSPH4AQ5TD94 716 aa14.25□□□□□ -0.13
COL6A3-205ENST00000392004 CARD11Q9BXL7 1154 aa14.25□□□□□ -0.13
COL6A3-205ENST00000392004 NCOA2Q15596 1464 aa14.25□□□□□ -0.13
COL6A3-205ENST00000392004 SETD5Q9C0A6 1442 aa14.25□□□□□ -0.13
COL6A3-205ENST00000392004 A0A0G2JS52 829 aa14.24□□□□□ -0.13
COL6A3-205ENST00000392004 LRRC9Q6ZRR7 1453 aa14.23□□□□□ -0.13
COL6A3-205ENST00000392004 SALL2Q9Y467 1007 aaPredicted RBP14.22□□□□□ -0.13
COL6A3-205ENST00000392004 DNAJC5Q9H3Z4 198 aa14.22□□□□□ -0.13
COL6A3-205ENST00000392004 EPRSP07814 1512 aaKnown RBP14.21□□□□□ -0.13
COL6A3-205ENST00000392004 TROQ12816 1431 aaPredicted RBP14.21□□□□□ -0.13
COL6A3-205ENST00000392004 KIF15Q9NS87 1388 aa14.21□□□□□ -0.13
COL6A3-205ENST00000392004 FGD6Q6ZV73 1430 aa14.2□□□□□ -0.14
COL6A3-205ENST00000392004 MYOM3Q5VTT5 1437 aa14.19□□□□□ -0.14
COL6A3-205ENST00000392004 CUL7Q14999 1698 aa14.19□□□□□ -0.14
COL6A3-205ENST00000392004 TNNT2P45379 298 aaPredicted RBP14.18□□□□□ -0.14
COL6A3-205ENST00000392004 PPM1GO15355 546 aaPredicted RBP14.18□□□□□ -0.14
COL6A3-205ENST00000392004 CLSPNQ9HAW4 1339 aa14.18□□□□□ -0.14
COL6A3-205ENST00000392004 ASXL2Q76L83 1435 aa14.18□□□□□ -0.14
COL6A3-205ENST00000392004 HAP1P54257 671 aaPredicted RBP14.18□□□□□ -0.14
COL6A3-205ENST00000392004 ADAMTS12P58397 1594 aa14.16□□□□□ -0.14
COL6A3-205ENST00000392004 ANP32CO43423 234 aa14.16□□□□□ -0.14
COL6A3-205ENST00000392004 EIF4G2P78344 907 aaKnown RBP eCLIP14.16□□□□□ -0.14
COL6A3-205ENST00000392004 L3MBTL2Q969R5 705 aa14.16□□□□□ -0.14
COL6A3-205ENST00000392004 THOC2Q8NI27 1593 aaKnown RBP14.16□□□□□ -0.14
COL6A3-205ENST00000392004 TARBP1Q13395 1621 aaKnown RBP14.15□□□□□ -0.14
COL6A3-205ENST00000392004 ATP10BO94823 1461 aa14.15□□□□□ -0.14
COL6A3-205ENST00000392004 FYCO1Q9BQS8 1478 aa14.15□□□□□ -0.14
COL6A3-205ENST00000392004 TRAK1Q9UPV9 953 aa14.14□□□□□ -0.15
COL6A3-205ENST00000392004 EID1Q9Y6B2 187 aa14.14□□□□□ -0.15
COL6A3-205ENST00000392004 NUP160Q12769 1436 aa14.13□□□□□ -0.15
COL6A3-205ENST00000392004 SRPK2P78362 688 aaKnown RBP14.13□□□□□ -0.15
COL6A3-205ENST00000392004 EFCAB5A4FU69 1503 aa14.13□□□□□ -0.15
COL6A3-205ENST00000392004 BCL11AQ9H165 835 aa14.12□□□□□ -0.15
COL6A3-205ENST00000392004 FBXO31Q5XUX0 539 aaPredicted RBP14.11□□□□□ -0.15
COL6A3-205ENST00000392004 PCF11O94913 1555 aaKnown RBP14.11□□□□□ -0.15
COL6A3-205ENST00000392004 HDGFP51858 240 aaKnown RBP14.1□□□□□ -0.15
COL6A3-205ENST00000392004 RBM33Q96EV2 1170 aaKnown RBP14.1□□□□□ -0.15
COL6A3-205ENST00000392004 ANKRD50Q9ULJ7 1429 aa14.09□□□□□ -0.15
COL6A3-205ENST00000392004 CEP170Q5SW79 1584 aa14.08□□□□□ -0.16
COL6A3-205ENST00000392004 PAK3O75914 559 aaPredicted RBP14.08□□□□□ -0.16
COL6A3-205ENST00000392004 TMEM132EQ6IEE7 984 aa14.08□□□□□ -0.16
COL6A3-205ENST00000392004 FAM9BQ8IZU0 186 aa14.07□□□□□ -0.16
COL6A3-205ENST00000392004 SLC26A8Q96RN1 970 aa14.07□□□□□ -0.16
COL6A3-205ENST00000392004 NUP153P49790 1475 aaKnown RBP14.07□□□□□ -0.16
COL6A3-205ENST00000392004 DISP1Q96F81 1524 aa14.06□□□□□ -0.16
COL6A3-205ENST00000392004 ABCA5Q8WWZ7 1642 aa14.06□□□□□ -0.16
COL6A3-205ENST00000392004 ERCC6L2Q5T890 1561 aa14.05□□□□□ -0.16
COL6A3-205ENST00000392004 ADGRL1O94910 1474 aa14.05□□□□□ -0.16
COL6A3-205ENST00000392004 SUPT16HQ9Y5B9 1047 aaKnown RBP14.04□□□□□ -0.16
COL6A3-205ENST00000392004 C9orf84Q5VXU9 1444 aa14.04□□□□□ -0.16
COL6A3-205ENST00000392004 FANCAO15360 1455 aa14.04□□□□□ -0.16
COL6A3-205ENST00000392004 HECW1Q76N89 1606 aa14.04□□□□□ -0.16
COL6A3-205ENST00000392004 PBRM1Q86U86 1689 aa14.03□□□□□ -0.16
COL6A3-205ENST00000392004 TXNDC2Q86VQ3 553 aa14.03□□□□□ -0.16
COL6A3-205ENST00000392004 HSPA2P54652 639 aa14.02□□□□□ -0.17
COL6A3-205ENST00000392004 CC2D1BQ5T0F9 858 aaKnown RBP14.01□□□□□ -0.17
COL6A3-205ENST00000392004 TIAM1Q13009 1591 aa14.01□□□□□ -0.17
COL6A3-205ENST00000392004 CCDC144AA2RUR9 1427 aa14□□□□□ -0.17
COL6A3-205ENST00000392004 MINK1Q8N4C8 1332 aaPredicted RBP14□□□□□ -0.17
COL6A3-205ENST00000392004 AKNAQ7Z591 1439 aa13.98□□□□□ -0.17
COL6A3-205ENST00000392004 ANP32EQ9BTT0 268 aa13.98□□□□□ -0.17
COL6A3-205ENST00000392004 HSPA5P11021 654 aaKnown RBP13.98□□□□□ -0.17
COL6A3-205ENST00000392004 KIAA0556O60303 1618 aa13.98□□□□□ -0.17
COL6A3-205ENST00000392004 ROCK2O75116 1388 aaKnown RBP13.97□□□□□ -0.17
COL6A3-205ENST00000392004 NEFMP07197 916 aa13.97□□□□□ -0.17
COL6A3-205ENST00000392004 WDR7Q9Y4E6 1490 aa13.96□□□□□ -0.17
COL6A3-205ENST00000392004 CFAP70Q5T0N1 1121 aa13.96□□□□□ -0.17
COL6A3-205ENST00000392004 UGGT2Q9NYU1 1516 aa13.96□□□□□ -0.17
COL6A3-205ENST00000392004 CHD1O14646 1710 aa13.96□□□□□ -0.17
COL6A3-205ENST00000392004 EHBP1L1Q8N3D4 1523 aa13.95□□□□□ -0.18
COL6A3-205ENST00000392004 ABCC2Q92887 1545 aa13.95□□□□□ -0.18
COL6A3-205ENST00000392004 DENND4BO75064 1496 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-205ENST00000392004 VGFO15240 615 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-205ENST00000392004 DHX57Q6P158 1386 aaKnown RBP13.95□□□□□ -0.18
COL6A3-205ENST00000392004 ST20-MTHFSA0A0A6YYL1 179 aa13.94□□□□□ -0.18
COL6A3-205ENST00000392004 KNSTRNQ9Y448 316 aa13.94□□□□□ -0.18
COL6A3-205ENST00000392004 TRAPPC8Q9Y2L5 1435 aa13.94□□□□□ -0.18
COL6A3-205ENST00000392004 NEFLP07196 543 aa13.94□□□□□ -0.18
COL6A3-205ENST00000392004 ERICH6Q7L0X2 663 aa13.94□□□□□ -0.18
COL6A3-205ENST00000392004 GPATCH8Q9UKJ3 1502 aaKnown RBP13.94□□□□□ -0.18
COL6A3-205ENST00000392004 DAPK1P53355 1430 aa13.93□□□□□ -0.18
COL6A3-205ENST00000392004 NEUROD2Q15784 382 aa13.93□□□□□ -0.18
COL6A3-205ENST00000392004 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.93□□□□□ -0.18
COL6A3-205ENST00000392004 NGDNQ8NEJ9 315 aaKnown RBP13.93□□□□□ -0.18
COL6A3-205ENST00000392004 TSHZ2Q9NRE2 1034 aa13.93□□□□□ -0.18
COL6A3-205ENST00000392004 MRS2Q9HD23 443 aa13.93□□□□□ -0.18
COL6A3-205ENST00000392004 RAPGEF6Q8TEU7 1601 aa13.92□□□□□ -0.18
COL6A3-205ENST00000392004 CAMSAP2Q08AD1 1489 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms