RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CFDP1Q9UEE9 299 aaPredicted RBP15.64■□□□□ 0.09
VPS53-202ENST00000389040 SUPT6HQ7KZ85 1726 aaKnown RBP15.63■□□□□ 0.09
VPS53-202ENST00000389040 CFAP74Q9C0B2 1584 aa15.63■□□□□ 0.09
VPS53-202ENST00000389040 PPRC1Q5VV67 1664 aaKnown RBP15.63■□□□□ 0.09
VPS53-202ENST00000389040 AKNAQ7Z591 1439 aa15.63■□□□□ 0.09
VPS53-202ENST00000389040 PLPPR3Q6T4P5 718 aa15.62■□□□□ 0.09
VPS53-202ENST00000389040 ARHGAP5Q13017 1502 aa15.6■□□□□ 0.09
VPS53-202ENST00000389040 MIA2Q96PC5 1412 aa15.6■□□□□ 0.09
VPS53-202ENST00000389040 MYO5CQ9NQX4 1742 aa15.6■□□□□ 0.09
VPS53-202ENST00000389040 KIAA1107Q9UPP5 1409 aa15.6■□□□□ 0.09
VPS53-202ENST00000389040 PLEKHH2Q8IVE3 1493 aa15.6■□□□□ 0.09
VPS53-202ENST00000389040 RSPH4AQ5TD94 716 aa15.59■□□□□ 0.09
VPS53-202ENST00000389040 PREX2Q70Z35 1606 aa15.59■□□□□ 0.09
VPS53-202ENST00000389040 TSPOAP1O95153 1857 aa15.58■□□□□ 0.09
VPS53-202ENST00000389040 MYOM3Q5VTT5 1437 aa15.58■□□□□ 0.08
VPS53-202ENST00000389040 PPARGC1BQ86YN6 1023 aaKnown RBP15.57■□□□□ 0.08
VPS53-202ENST00000389040 SENP3Q9H4L4 574 aaPredicted RBP15.57■□□□□ 0.08
VPS53-202ENST00000389040 DENND4BO75064 1496 aaPredicted RBP15.57■□□□□ 0.08
VPS53-202ENST00000389040 ADGRL1O94910 1474 aa15.56■□□□□ 0.08
VPS53-202ENST00000389040 SCAPERQ9BY12 1400 aa15.56■□□□□ 0.08
VPS53-202ENST00000389040 ITSN2Q9NZM3 1697 aa15.55■□□□□ 0.08
VPS53-202ENST00000389040 KDM6BO15054 1643 aa15.55■□□□□ 0.08
VPS53-202ENST00000389040 COL17A1Q9UMD9 1497 aaPredicted RBP15.54■□□□□ 0.08
VPS53-202ENST00000389040 CDC42BPAQ5VT25 1732 aa15.54■□□□□ 0.08
VPS53-202ENST00000389040 CDC42BPBQ9Y5S2 1711 aa15.53■□□□□ 0.08
VPS53-202ENST00000389040 ZNF777Q9ULD5 760 aaPredicted RBP15.53■□□□□ 0.08
VPS53-202ENST00000389040 ZNF518AQ6AHZ1 1483 aa15.52■□□□□ 0.08
VPS53-202ENST00000389040 MAGI2Q86UL8 1455 aa15.52■□□□□ 0.07
VPS53-202ENST00000389040 POGZQ7Z3K3 1410 aa15.51■□□□□ 0.07
VPS53-202ENST00000389040 RAPGEF3O95398 923 aa15.51■□□□□ 0.07
VPS53-202ENST00000389040 ABCC1P33527 1531 aa15.5■□□□□ 0.07
VPS53-202ENST00000389040 FGD6Q6ZV73 1430 aa15.5■□□□□ 0.07
VPS53-202ENST00000389040 SAMD9LQ8IVG5 1584 aa15.48■□□□□ 0.07
VPS53-202ENST00000389040 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.48■□□□□ 0.07
VPS53-202ENST00000389040 MBD5Q9P267 1494 aa15.48■□□□□ 0.07
VPS53-202ENST00000389040 ZNF644Q9H582 1327 aaPredicted RBP15.47■□□□□ 0.07
VPS53-202ENST00000389040 HNRNPMP52272 730 aaKnown RBP eCLIP15.47■□□□□ 0.073e-6■■■□□ 17.4
VPS53-202ENST00000389040 AFAP1Q8N556 730 aa15.47■□□□□ 0.07
VPS53-202ENST00000389040 CAMSAP2Q08AD1 1489 aa15.46■□□□□ 0.07
VPS53-202ENST00000389040 TCOF1Q13428 1488 aaKnown RBP15.46■□□□□ 0.07
VPS53-202ENST00000389040 ZMYM4Q5VZL5 1548 aa15.46■□□□□ 0.07
VPS53-202ENST00000389040 ARHGEF12Q9NZN5 1544 aa15.46■□□□□ 0.07
VPS53-202ENST00000389040 MLH3Q9UHC1 1453 aa15.46■□□□□ 0.07
VPS53-202ENST00000389040 TSPY4P0CV99 314 aa15.45■□□□□ 0.06
VPS53-202ENST00000389040 TSPY10P0CW01 314 aa15.45■□□□□ 0.06
VPS53-202ENST00000389040 TRAPPC8Q9Y2L5 1435 aa15.45■□□□□ 0.06
VPS53-202ENST00000389040 KDM5CP41229 1560 aa15.44■□□□□ 0.06
VPS53-202ENST00000389040 SYCP2Q9BX26 1530 aa15.44■□□□□ 0.06
VPS53-202ENST00000389040 RTEL1-TNFRSF6BF6WH68 1400 aa15.44■□□□□ 0.06
VPS53-202ENST00000389040 SPAG9O60271 1321 aaKnown RBP15.43■□□□□ 0.06
VPS53-202ENST00000389040 CCDC141Q6ZP82 1450 aa15.43■□□□□ 0.06
VPS53-202ENST00000389040 ARHGEF5Q12774 1597 aa15.43■□□□□ 0.06
VPS53-202ENST00000389040 RICTORQ6R327 1708 aa15.42■□□□□ 0.06
VPS53-202ENST00000389040 FRMPD1Q5SYB0 1578 aa15.42■□□□□ 0.06
VPS53-202ENST00000389040 PTPN23Q9H3S7 1636 aa15.41■□□□□ 0.06
VPS53-202ENST00000389040 RRBP1Q9P2E9 1410 aaKnown RBP15.41■□□□□ 0.06
VPS53-202ENST00000389040 ZEB1P37275 1124 aaPredicted RBP15.39■□□□□ 0.05
VPS53-202ENST00000389040 FAM50AQ14320 339 aaKnown RBP15.39■□□□□ 0.05
VPS53-202ENST00000389040 MYT1LQ9UL68 1186 aa15.38■□□□□ 0.05
VPS53-202ENST00000389040 ATP10AO60312 1499 aa15.37■□□□□ 0.05
VPS53-202ENST00000389040 ZFYVE16Q7Z3T8 1539 aa15.37■□□□□ 0.05
VPS53-202ENST00000389040 HECW2Q9P2P5 1572 aa15.37■□□□□ 0.05
VPS53-202ENST00000389040 SHANK2Q9UPX8 1470 aa15.37■□□□□ 0.05
VPS53-202ENST00000389040 ABCC5O15440 1437 aa15.36■□□□□ 0.05
VPS53-202ENST00000389040 DAPK1P53355 1430 aa15.35■□□□□ 0.05
VPS53-202ENST00000389040 ARHGEF40Q8TER5 1519 aa15.34■□□□□ 0.05
VPS53-202ENST00000389040 C9orf84Q5VXU9 1444 aa15.34■□□□□ 0.05
VPS53-202ENST00000389040 YEATS2Q9ULM3 1422 aa15.34■□□□□ 0.05
VPS53-202ENST00000389040 MAST1Q9Y2H9 1570 aa15.33■□□□□ 0.05
VPS53-202ENST00000389040 ATP7AQ04656 1500 aa15.33■□□□□ 0.05
VPS53-202ENST00000389040 REREQ9P2R6 1566 aa15.33■□□□□ 0.04
VPS53-202ENST00000389040 DNMT1P26358 1616 aaKnown RBP15.32■□□□□ 0.04
VPS53-202ENST00000389040 INO80Q9ULG1 1556 aaPredicted RBP15.32■□□□□ 0.04
VPS53-202ENST00000389040 ANKRD30AQ9BXX3 1397 aa15.31■□□□□ 0.04
VPS53-202ENST00000389040 ROCK1Q13464 1354 aa15.31■□□□□ 0.04
VPS53-202ENST00000389040 DHX29Q7Z478 1369 aaKnown RBP15.31■□□□□ 0.04
VPS53-202ENST00000389040 KIDINS220Q9ULH0 1771 aa15.3■□□□□ 0.04
VPS53-202ENST00000389040 AGLP35573 1532 aa15.29■□□□□ 0.04
VPS53-202ENST00000389040 PPP6R1Q9UPN7 881 aa15.29■□□□□ 0.04
VPS53-202ENST00000389040 ADGRL2O95490 1459 aa15.29■□□□□ 0.04
VPS53-202ENST00000389040 DIP2CQ9Y2E4 1556 aa15.29■□□□□ 0.04
VPS53-202ENST00000389040 NCOA1Q15788 1441 aa15.28■□□□□ 0.04
VPS53-202ENST00000389040 A2MP01023 1474 aa15.28■□□□□ 0.04
VPS53-202ENST00000389040 ARID4BQ4LE39 1312 aaPredicted RBP15.26■□□□□ 0.03
VPS53-202ENST00000389040 PLXNC1O60486 1568 aa15.26■□□□□ 0.03
VPS53-202ENST00000389040 ABCA6Q8N139 1617 aa15.25■□□□□ 0.03
VPS53-202ENST00000389040 KIF15Q9NS87 1388 aa15.25■□□□□ 0.03
VPS53-202ENST00000389040 DUOX2Q9NRD8 1548 aa15.24■□□□□ 0.03
VPS53-202ENST00000389040 CROCC2H7BZ55 1655 aa15.24■□□□□ 0.03
VPS53-202ENST00000389040 ADGBQ8N7X0 1667 aa15.24■□□□□ 0.03
VPS53-202ENST00000389040 RRP7BPQ9NSQ0 103 aa15.23■□□□□ 0.03
VPS53-202ENST00000389040 CHIC2Q9UKJ5 165 aa15.23■□□□□ 0.03
VPS53-202ENST00000389040 PTPRKQ15262 1439 aa15.23■□□□□ 0.03
VPS53-202ENST00000389040 ERBINQ96RT1 1412 aa15.23■□□□□ 0.03
VPS53-202ENST00000389040 ACIN1Q9UKV3 1341 aaKnown RBP15.22■□□□□ 0.03
VPS53-202ENST00000389040 ITGAEP38570 1179 aa15.2■□□□□ 0.02
VPS53-202ENST00000389040 KIF3BO15066 747 aa15.19■□□□□ 0.02
VPS53-202ENST00000389040 CCER1Q8TC90 406 aaPredicted RBP15.19■□□□□ 0.02
VPS53-202ENST00000389040 ANKRD50Q9ULJ7 1429 aa15.18■□□□□ 0.02
VPS53-202ENST00000389040 ESF1Q9H501 851 aaKnown RBP15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms