RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 MYOM3Q5VTT5 1437 aa31.46■■■□□ 2.63
TRIM54-202ENST00000380075 KIF14Q15058 1648 aa31.41■■■□□ 2.62
TRIM54-202ENST00000380075 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.4■■■□□ 2.62
TRIM54-202ENST00000380075 CD109Q6YHK3 1445 aa31.38■■■□□ 2.61
TRIM54-202ENST00000380075 ABCA9Q8IUA7 1624 aa31.37■■■□□ 2.61
TRIM54-202ENST00000380075 TTC37Q6PGP7 1564 aa31.35■■■□□ 2.61
TRIM54-202ENST00000380075 MAP3K4Q9Y6R4 1608 aa31.34■■■□□ 2.61
TRIM54-202ENST00000380075 HFM1A2PYH4 1435 aa31.3■■■□□ 2.6
TRIM54-202ENST00000380075 PTPN23Q9H3S7 1636 aa31.29■■■□□ 2.6
TRIM54-202ENST00000380075 TCOF1Q13428 1488 aaKnown RBP31.28■■■□□ 2.6
TRIM54-202ENST00000380075 TSPOAP1O95153 1857 aa31.28■■■□□ 2.6
TRIM54-202ENST00000380075 TIMELESSQ9UNS1 1208 aa31.24■■■□□ 2.59
TRIM54-202ENST00000380075 PLCH2O75038 1416 aa31.23■■■□□ 2.59
TRIM54-202ENST00000380075 MIA2Q96PC5 1412 aa31.23■■■□□ 2.59
TRIM54-202ENST00000380075 PPRC1Q5VV67 1664 aaKnown RBP31.22■■■□□ 2.59
TRIM54-202ENST00000380075 PTPRKQ15262 1439 aa31.21■■■□□ 2.59
TRIM54-202ENST00000380075 GPATCH8Q9UKJ3 1502 aaKnown RBP31.19■■■□□ 2.58
TRIM54-202ENST00000380075 CENPBP07199 599 aaPredicted RBP31.19■■■□□ 2.58
TRIM54-202ENST00000380075 TEX14Q8IWB6 1497 aa31.17■■■□□ 2.58
TRIM54-202ENST00000380075 MYO5CQ9NQX4 1742 aa31.15■■■□□ 2.58
TRIM54-202ENST00000380075 NAIPQ13075 1403 aa31.15■■■□□ 2.58
TRIM54-202ENST00000380075 AKNAQ7Z591 1439 aa31.14■■■□□ 2.58
TRIM54-202ENST00000380075 FANCAO15360 1455 aa31.14■■■□□ 2.58
TRIM54-202ENST00000380075 EFCAB2Q5VUJ9 269 aa31.13■■■□□ 2.57
TRIM54-202ENST00000380075 ARHGAP5Q13017 1502 aa31.13■■■□□ 2.57
TRIM54-202ENST00000380075 CFDP1Q9UEE9 299 aaPredicted RBP31.12■■■□□ 2.57
TRIM54-202ENST00000380075 CDC42BPAQ5VT25 1732 aa31.12■■■□□ 2.57
TRIM54-202ENST00000380075 ACIN1Q9UKV3 1341 aaKnown RBP31.12■■■□□ 2.57
TRIM54-202ENST00000380075 ARAP3Q8WWN8 1544 aa31.11■■■□□ 2.57
TRIM54-202ENST00000380075 PREX2Q70Z35 1606 aa31.1■■■□□ 2.57
TRIM54-202ENST00000380075 CDC42BPBQ9Y5S2 1711 aa31.1■■■□□ 2.57
TRIM54-202ENST00000380075 ZNF777Q9ULD5 760 aaPredicted RBP31.09■■■□□ 2.57
TRIM54-202ENST00000380075 NEO1Q92859 1461 aa31.08■■■□□ 2.57
TRIM54-202ENST00000380075 MIER1Q8N108 512 aa31.06■■■□□ 2.56
TRIM54-202ENST00000380075 GCC2Q8IWJ2 1684 aa31.05■■■□□ 2.56
TRIM54-202ENST00000380075 ZNF644Q9H582 1327 aaPredicted RBP31.03■■■□□ 2.56
TRIM54-202ENST00000380075 COL17A1Q9UMD9 1497 aaPredicted RBP31.02■■■□□ 2.56
TRIM54-202ENST00000380075 ITSN2Q9NZM3 1697 aa31.01■■■□□ 2.55
TRIM54-202ENST00000380075 SIN3AQ96ST3 1273 aa30.99■■■□□ 2.55
TRIM54-202ENST00000380075 SCAF1Q9H7N4 1312 aaKnown RBP30.99■■■□□ 2.55
TRIM54-202ENST00000380075 CFAP74Q9C0B2 1584 aa30.99■■■□□ 2.55
TRIM54-202ENST00000380075 ADGRL1O94910 1474 aa30.98■■■□□ 2.55
TRIM54-202ENST00000380075 NEUROD1Q13562 356 aa30.97■■■□□ 2.55
TRIM54-202ENST00000380075 SCAPERQ9BY12 1400 aa30.97■■■□□ 2.55
TRIM54-202ENST00000380075 SAMD9LQ8IVG5 1584 aa30.95■■■□□ 2.55
TRIM54-202ENST00000380075 RAPGEF3O95398 923 aa30.95■■■□□ 2.54
TRIM54-202ENST00000380075 KDM6BO15054 1643 aa30.92■■■□□ 2.54
TRIM54-202ENST00000380075 HNRNPMP52272 730 aaKnown RBP eCLIP30.92■■■□□ 2.54
TRIM54-202ENST00000380075 ARHGEF12Q9NZN5 1544 aa30.92■■■□□ 2.54
TRIM54-202ENST00000380075 ROCK1Q13464 1354 aa30.91■■■□□ 2.54
TRIM54-202ENST00000380075 ABCC1P33527 1531 aa30.89■■■□□ 2.54
TRIM54-202ENST00000380075 DENND4BO75064 1496 aaPredicted RBP30.89■■■□□ 2.54
TRIM54-202ENST00000380075 CAMSAP2Q08AD1 1489 aa30.89■■■□□ 2.54
TRIM54-202ENST00000380075 DNMT1P26358 1616 aaKnown RBP30.89■■■□□ 2.54
TRIM54-202ENST00000380075 PPP1R15AO75807 674 aaPredicted RBP30.88■■■□□ 2.53
TRIM54-202ENST00000380075 DAPK1P53355 1430 aa30.87■■■□□ 2.53
TRIM54-202ENST00000380075 KIAA1107Q9UPP5 1409 aa30.87■■■□□ 2.53
TRIM54-202ENST00000380075 AFAP1Q8N556 730 aa30.86■■■□□ 2.53
TRIM54-202ENST00000380075 SYCP2Q9BX26 1530 aa30.86■■■□□ 2.53
TRIM54-202ENST00000380075 PLEKHH2Q8IVE3 1493 aa30.86■■■□□ 2.53
TRIM54-202ENST00000380075 TRAPPC8Q9Y2L5 1435 aa30.85■■■□□ 2.53
TRIM54-202ENST00000380075 TONSLQ96HA7 1378 aa30.85■■■□□ 2.53
TRIM54-202ENST00000380075 POGZQ7Z3K3 1410 aa30.84■■■□□ 2.53
TRIM54-202ENST00000380075 RRP7BPQ9NSQ0 103 aa30.84■■■□□ 2.53
TRIM54-202ENST00000380075 MBD5Q9P267 1494 aa30.83■■■□□ 2.53
TRIM54-202ENST00000380075 CHIC2Q9UKJ5 165 aa30.81■■■□□ 2.52
TRIM54-202ENST00000380075 ABCC5O15440 1437 aa30.8■■■□□ 2.52
TRIM54-202ENST00000380075 FRMPD1Q5SYB0 1578 aa30.8■■■□□ 2.52
TRIM54-202ENST00000380075 ZNF518AQ6AHZ1 1483 aa30.78■■■□□ 2.52
TRIM54-202ENST00000380075 RICTORQ6R327 1708 aa30.77■■■□□ 2.52
TRIM54-202ENST00000380075 RSPH4AQ5TD94 716 aa30.73■■■□□ 2.51
TRIM54-202ENST00000380075 KDM5CP41229 1560 aa30.7■■■□□ 2.5
TRIM54-202ENST00000380075 CCDC141Q6ZP82 1450 aa30.7■■■□□ 2.5
TRIM54-202ENST00000380075 YTHDC1Q96MU7 727 aaKnown RBP30.69■■■□□ 2.5
TRIM54-202ENST00000380075 MYT1LQ9UL68 1186 aa30.69■■■□□ 2.5
TRIM54-202ENST00000380075 SPAG9O60271 1321 aaKnown RBP30.69■■■□□ 2.5
TRIM54-202ENST00000380075 ARHGEF5Q12774 1597 aa30.69■■■□□ 2.5
TRIM54-202ENST00000380075 TRIM52Q96A61 297 aa30.68■■■□□ 2.5
TRIM54-202ENST00000380075 ZMYM4Q5VZL5 1548 aa30.67■■■□□ 2.5
TRIM54-202ENST00000380075 TSPY4P0CV99 314 aa30.66■■■□□ 2.5
TRIM54-202ENST00000380075 TSPY10P0CW01 314 aa30.66■■■□□ 2.5
TRIM54-202ENST00000380075 ADGBQ8N7X0 1667 aa30.64■■■□□ 2.5
TRIM54-202ENST00000380075 MPHOSPH9Q99550 1183 aa30.64■■■□□ 2.5
TRIM54-202ENST00000380075 YEATS2Q9ULM3 1422 aa30.64■■■□□ 2.49
TRIM54-202ENST00000380075 ADGRL2O95490 1459 aa30.64■■■□□ 2.49
TRIM54-202ENST00000380075 MLH3Q9UHC1 1453 aa30.64■■■□□ 2.49
TRIM54-202ENST00000380075 MAGI2Q86UL8 1455 aa30.62■■■□□ 2.49
TRIM54-202ENST00000380075 CROCC2H7BZ55 1655 aa30.61■■■□□ 2.49
TRIM54-202ENST00000380075 HECW2Q9P2P5 1572 aa30.6■■■□□ 2.49
TRIM54-202ENST00000380075 GTF3C3Q9Y5Q9 886 aa30.59■■■□□ 2.49
TRIM54-202ENST00000380075 ZFYVE16Q7Z3T8 1539 aa30.58■■■□□ 2.49
TRIM54-202ENST00000380075 C9orf84Q5VXU9 1444 aa30.57■■■□□ 2.48
TRIM54-202ENST00000380075 ATP7AQ04656 1500 aa30.57■■■□□ 2.48
TRIM54-202ENST00000380075 NCOA1Q15788 1441 aa30.56■■■□□ 2.48
TRIM54-202ENST00000380075 RTEL1-TNFRSF6BF6WH68 1400 aa30.56■■■□□ 2.48
TRIM54-202ENST00000380075 KIDINS220Q9ULH0 1771 aa30.55■■■□□ 2.48
TRIM54-202ENST00000380075 INO80Q9ULG1 1556 aaPredicted RBP30.55■■■□□ 2.48
TRIM54-202ENST00000380075 SHANK2Q9UPX8 1470 aa30.54■■■□□ 2.48
TRIM54-202ENST00000380075 ARHGEF40Q8TER5 1519 aa30.52■■■□□ 2.48
TRIM54-202ENST00000380075 ANKRD30AQ9BXX3 1397 aa30.51■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms