RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 ADGRL1O94910 1474 aa21.07■□□□□ 0.96
VPS28-202ENST00000377348 LRRC9Q6ZRR7 1453 aa21.07■□□□□ 0.96
VPS28-202ENST00000377348 CDC42BPAQ5VT25 1732 aa21.06■□□□□ 0.96
VPS28-202ENST00000377348 MAP3K1Q13233 1512 aa21.05■□□□□ 0.96
VPS28-202ENST00000377348 GPATCH8Q9UKJ3 1502 aaKnown RBP21.05■□□□□ 0.96
VPS28-202ENST00000377348 DENND4BO75064 1496 aaPredicted RBP21.05■□□□□ 0.96
VPS28-202ENST00000377348 FRMPD1Q5SYB0 1578 aa21.05■□□□□ 0.96
VPS28-202ENST00000377348 CCNB3Q8WWL7 1395 aa21.04■□□□□ 0.96
VPS28-202ENST00000377348 SCAPERQ9BY12 1400 aa21.04■□□□□ 0.96
VPS28-202ENST00000377348 NCOA2Q15596 1464 aa21.02■□□□□ 0.96
VPS28-202ENST00000377348 APLP2Q06481 763 aa21.02■□□□□ 0.96
VPS28-202ENST00000377348 ZNF777Q9ULD5 760 aaPredicted RBP21.01■□□□□ 0.95
VPS28-202ENST00000377348 SUPT6HQ7KZ85 1726 aaKnown RBP21.01■□□□□ 0.95
VPS28-202ENST00000377348 RICTORQ6R327 1708 aa21■□□□□ 0.95
VPS28-202ENST00000377348 CFDP1Q9UEE9 299 aaPredicted RBP20.99■□□□□ 0.95
VPS28-202ENST00000377348 POGZQ7Z3K3 1410 aa20.98■□□□□ 0.95
VPS28-202ENST00000377348 ARHGEF12Q9NZN5 1544 aa20.97■□□□□ 0.95
VPS28-202ENST00000377348 ABCC1P33527 1531 aa20.96■□□□□ 0.95
VPS28-202ENST00000377348 SAMD9LQ8IVG5 1584 aa20.95■□□□□ 0.94
VPS28-202ENST00000377348 AFAP1Q8N556 730 aa20.94■□□□□ 0.94
VPS28-202ENST00000377348 ZNF644Q9H582 1327 aaPredicted RBP20.93■□□□□ 0.94
VPS28-202ENST00000377348 TRAPPC8Q9Y2L5 1435 aa20.93■□□□□ 0.94
VPS28-202ENST00000377348 ITSN2Q9NZM3 1697 aa20.93■□□□□ 0.94
VPS28-202ENST00000377348 ZMYM4Q5VZL5 1548 aa20.92■□□□□ 0.94
VPS28-202ENST00000377348 SYCP2Q9BX26 1530 aa20.9■□□□□ 0.94
VPS28-202ENST00000377348 ZNF518AQ6AHZ1 1483 aa20.9■□□□□ 0.94
VPS28-202ENST00000377348 YEATS2Q9ULM3 1422 aa20.9■□□□□ 0.94
VPS28-202ENST00000377348 HNRNPMP52272 730 aaKnown RBP eCLIP20.9■□□□□ 0.94
VPS28-202ENST00000377348 ARHGEF40Q8TER5 1519 aa20.88■□□□□ 0.93
VPS28-202ENST00000377348 KDM5CP41229 1560 aa20.87■□□□□ 0.93
VPS28-202ENST00000377348 ZFYVE16Q7Z3T8 1539 aa20.87■□□□□ 0.93
VPS28-202ENST00000377348 PLEKHH2Q8IVE3 1493 aa20.86■□□□□ 0.93
VPS28-202ENST00000377348 KIAA1107Q9UPP5 1409 aa20.86■□□□□ 0.93
VPS28-202ENST00000377348 MAGI2Q86UL8 1455 aa20.85■□□□□ 0.93
VPS28-202ENST00000377348 KDM4FA0A1W2PPD8 638 aa20.84■□□□□ 0.93
VPS28-202ENST00000377348 MYT1LQ9UL68 1186 aa20.84■□□□□ 0.93
VPS28-202ENST00000377348 MYOM3Q5VTT5 1437 aa20.84■□□□□ 0.93
VPS28-202ENST00000377348 CAMSAP2Q08AD1 1489 aa20.83■□□□□ 0.93
VPS28-202ENST00000377348 HECW2Q9P2P5 1572 aa20.82■□□□□ 0.92
VPS28-202ENST00000377348 MBD5Q9P267 1494 aa20.81■□□□□ 0.92
VPS28-202ENST00000377348 PPARGC1BQ86YN6 1023 aaKnown RBP20.81■□□□□ 0.92
VPS28-202ENST00000377348 MLH3Q9UHC1 1453 aa20.81■□□□□ 0.92
VPS28-202ENST00000377348 ARID4BQ4LE39 1312 aaPredicted RBP20.78■□□□□ 0.92
VPS28-202ENST00000377348 MIA2Q96PC5 1412 aa20.78■□□□□ 0.92
VPS28-202ENST00000377348 SPAG9O60271 1321 aaKnown RBP20.78■□□□□ 0.92
VPS28-202ENST00000377348 ATP10AO60312 1499 aa20.77■□□□□ 0.92
VPS28-202ENST00000377348 SIGLEC1Q9BZZ2 1709 aa20.77■□□□□ 0.92
VPS28-202ENST00000377348 KIDINS220Q9ULH0 1771 aa20.77■□□□□ 0.91
VPS28-202ENST00000377348 DIP2CQ9Y2E4 1556 aa20.76■□□□□ 0.91
VPS28-202ENST00000377348 ABCA6Q8N139 1617 aa20.76■□□□□ 0.91
VPS28-202ENST00000377348 C9orf84Q5VXU9 1444 aa20.75■□□□□ 0.91
VPS28-202ENST00000377348 FGD6Q6ZV73 1430 aa20.74■□□□□ 0.91
VPS28-202ENST00000377348 CCDC141Q6ZP82 1450 aa20.74■□□□□ 0.91
VPS28-202ENST00000377348 ATP7AQ04656 1500 aa20.73■□□□□ 0.91
VPS28-202ENST00000377348 INO80Q9ULG1 1556 aaPredicted RBP20.72■□□□□ 0.91
VPS28-202ENST00000377348 AEBP2Q6ZN18 517 aaPredicted RBP20.72■□□□□ 0.91
VPS28-202ENST00000377348 PTPN23Q9H3S7 1636 aa20.71■□□□□ 0.91
VPS28-202ENST00000377348 ARHGEF5Q12774 1597 aa20.71■□□□□ 0.91
VPS28-202ENST00000377348 MLECQ14165 292 aa20.7■□□□□ 0.9
VPS28-202ENST00000377348 BCORL1Q5H9F3 1711 aa20.69■□□□□ 0.9
VPS28-202ENST00000377348 RSPH4AQ5TD94 716 aa20.68■□□□□ 0.9
VPS28-202ENST00000377348 TCOF1Q13428 1488 aaKnown RBP20.67■□□□□ 0.9
VPS28-202ENST00000377348 RTEL1-TNFRSF6BF6WH68 1400 aa20.66■□□□□ 0.9
VPS28-202ENST00000377348 REREQ9P2R6 1566 aa20.66■□□□□ 0.9
VPS28-202ENST00000377348 ADAMTSL3P82987 1691 aa20.66■□□□□ 0.9
VPS28-202ENST00000377348 TSPY4P0CV99 314 aa20.65■□□□□ 0.9
VPS28-202ENST00000377348 TSPY10P0CW01 314 aa20.65■□□□□ 0.9
VPS28-202ENST00000377348 FAM50AQ14320 339 aaKnown RBP20.63■□□□□ 0.89
VPS28-202ENST00000377348 MADDQ8WXG6 1647 aa20.63■□□□□ 0.89
VPS28-202ENST00000377348 A2MP01023 1474 aa20.62■□□□□ 0.89
VPS28-202ENST00000377348 ABCC5O15440 1437 aa20.62■□□□□ 0.89
VPS28-202ENST00000377348 AGLP35573 1532 aa20.61■□□□□ 0.89
VPS28-202ENST00000377348 DAPK1P53355 1430 aa20.6■□□□□ 0.89
VPS28-202ENST00000377348 PLXNC1O60486 1568 aa20.59■□□□□ 0.89
VPS28-202ENST00000377348 MAST1Q9Y2H9 1570 aa20.59■□□□□ 0.89
VPS28-202ENST00000377348 ADGBQ8N7X0 1667 aa20.59■□□□□ 0.89
VPS28-202ENST00000377348 DNMT1P26358 1616 aaKnown RBP20.58■□□□□ 0.89
VPS28-202ENST00000377348 CROCC2H7BZ55 1655 aa20.56■□□□□ 0.88
VPS28-202ENST00000377348 RIMS1Q86UR5 1692 aaKnown RBP20.56■□□□□ 0.88
VPS28-202ENST00000377348 DHX29Q7Z478 1369 aaKnown RBP20.56■□□□□ 0.88
VPS28-202ENST00000377348 PTPRMP28827 1452 aa20.56■□□□□ 0.88
VPS28-202ENST00000377348 CHIC2Q9UKJ5 165 aa20.55■□□□□ 0.88
VPS28-202ENST00000377348 SHANK2Q9UPX8 1470 aa20.55■□□□□ 0.88
VPS28-202ENST00000377348 FER1L4A9Z1Z3 1794 aa20.54■□□□□ 0.88
VPS28-202ENST00000377348 PLPPR3Q6T4P5 718 aa20.53■□□□□ 0.88
VPS28-202ENST00000377348 GGT6Q6P531 493 aa20.51■□□□□ 0.87
VPS28-202ENST00000377348 RRP7BPQ9NSQ0 103 aa20.5■□□□□ 0.87
VPS28-202ENST00000377348 KIF3BO15066 747 aa20.49■□□□□ 0.87
VPS28-202ENST00000377348 PTPRKQ15262 1439 aa20.49■□□□□ 0.87
VPS28-202ENST00000377348 KIF15Q9NS87 1388 aa20.48■□□□□ 0.87
VPS28-202ENST00000377348 ITGAEP38570 1179 aa20.47■□□□□ 0.87
VPS28-202ENST00000377348 RRBP1Q9P2E9 1410 aaKnown RBP20.46■□□□□ 0.87
VPS28-202ENST00000377348 CEBPAP49715 358 aaPredicted RBP20.46■□□□□ 0.87
VPS28-202ENST00000377348 ESF1Q9H501 851 aaKnown RBP20.46■□□□□ 0.87
VPS28-202ENST00000377348 ANKRD30AQ9BXX3 1397 aa20.46■□□□□ 0.87
VPS28-202ENST00000377348 DUOX2Q9NRD8 1548 aa20.45■□□□□ 0.86
VPS28-202ENST00000377348 NCOA1Q15788 1441 aa20.44■□□□□ 0.86
VPS28-202ENST00000377348 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.44■□□□□ 0.863e-6■■□□□ 12.6
VPS28-202ENST00000377348 ADGRL2O95490 1459 aa20.43■□□□□ 0.86
VPS28-202ENST00000377348 CNTLNQ9NXG0 1405 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms