RNA–Protein interactions for RNA: ENST00000377047.8

GPC6-201, Transcript of glypican 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC6, Length 6,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-201ENST00000377047 NAP1L2Q9ULW6 460 aaPredicted RBP17.55■□□□□ 0.4
GPC6-201ENST00000377047 SETD5Q9C0A6 1442 aa17.55■□□□□ 0.4
GPC6-201ENST00000377047 KIF3BO15066 747 aa17.53■□□□□ 0.4
GPC6-201ENST00000377047 NUP155O75694 1391 aa17.52■□□□□ 0.39
GPC6-201ENST00000377047 KANK4Q5T7N3 995 aaPredicted RBP17.51■□□□□ 0.39
GPC6-201ENST00000377047 FMN1Q68DA7 1419 aa17.51■□□□□ 0.39
GPC6-201ENST00000377047 CCDC9Q9Y3X0 531 aaKnown RBP17.51■□□□□ 0.39
GPC6-201ENST00000377047 HNRNPMP52272 730 aaKnown RBP eCLIP17.5■□□□□ 0.392e-6■■■■■ 27.7
GPC6-201ENST00000377047 ROCK2O75116 1388 aaKnown RBP17.5■□□□□ 0.39
GPC6-201ENST00000377047 HSPA5P11021 654 aaKnown RBP17.5■□□□□ 0.39
GPC6-201ENST00000377047 TRIM44Q96DX7 344 aaPredicted RBP17.5■□□□□ 0.39
GPC6-201ENST00000377047 ANKRD30AQ9BXX3 1397 aa17.5■□□□□ 0.39
GPC6-201ENST00000377047 ZNF330Q9Y3S2 320 aaPredicted RBP17.49■□□□□ 0.39
GPC6-201ENST00000377047 VPS8Q8N3P4 1428 aa17.49■□□□□ 0.39
GPC6-201ENST00000377047 NUTM2DQ5VT03 806 aaPredicted RBP17.48■□□□□ 0.39
GPC6-201ENST00000377047 ANP32EQ9BTT0 268 aa17.48■□□□□ 0.39
GPC6-201ENST00000377047 EID1Q9Y6B2 187 aa17.48■□□□□ 0.39
GPC6-201ENST00000377047 PTMAP06454 111 aaKnown RBP17.47■□□□□ 0.39
GPC6-201ENST00000377047 MPHOSPH9Q99550 1183 aa17.46■□□□□ 0.39
GPC6-201ENST00000377047 KTN1Q86UP2 1357 aaKnown RBP17.45■□□□□ 0.38
GPC6-201ENST00000377047 WASHC2CQ9Y4E1 1318 aa17.45■□□□□ 0.38
GPC6-201ENST00000377047 HSP90AB1P08238 724 aaKnown RBP17.45■□□□□ 0.38
GPC6-201ENST00000377047 SPAG9O60271 1321 aaKnown RBP17.45■□□□□ 0.38
GPC6-201ENST00000377047 PPP4R2Q9NY27 417 aa17.44■□□□□ 0.38
GPC6-201ENST00000377047 ISY1Q9ULR0 285 aaKnown RBP17.44■□□□□ 0.38
GPC6-201ENST00000377047 U2AF1L5P0DN76 240 aaPredicted RBP17.43■□□□□ 0.38
GPC6-201ENST00000377047 U2AF1Q01081 240 aaKnown RBP eCLIP17.43■□□□□ 0.38
GPC6-201ENST00000377047 CADPSQ9ULU8 1353 aa17.42■□□□□ 0.38
GPC6-201ENST00000377047 TIMELESSQ9UNS1 1208 aa17.42■□□□□ 0.38
GPC6-201ENST00000377047 WIZO95785 1651 aa17.41■□□□□ 0.38
GPC6-201ENST00000377047 APBB1O00213 710 aa17.4■□□□□ 0.38
GPC6-201ENST00000377047 EIF3AQ14152 1382 aaKnown RBP17.4■□□□□ 0.38
GPC6-201ENST00000377047 JPH4Q96JJ6 628 aa17.4■□□□□ 0.38
GPC6-201ENST00000377047 FHOD3Q2V2M9 1422 aa17.4■□□□□ 0.38
GPC6-201ENST00000377047 NGDNQ8NEJ9 315 aaKnown RBP17.39■□□□□ 0.37
GPC6-201ENST00000377047 TOP2AP11388 1531 aaKnown RBP17.39■□□□□ 0.37
GPC6-201ENST00000377047 PLCB2Q00722 1185 aa17.38■□□□□ 0.37
GPC6-201ENST00000377047 RAPGEF2Q9Y4G8 1499 aa17.37■□□□□ 0.37
GPC6-201ENST00000377047 B4GALNT3Q6L9W6 998 aa17.37■□□□□ 0.37
GPC6-201ENST00000377047 NUTM2FA1L443 756 aa17.37■□□□□ 0.37
GPC6-201ENST00000377047 CALD1Q05682 793 aaKnown RBP17.36■□□□□ 0.37
GPC6-201ENST00000377047 RAB3GAP2Q9H2M9 1393 aa17.36■□□□□ 0.37
GPC6-201ENST00000377047 CCDC18Q5T9S5 1454 aa17.35■□□□□ 0.37
GPC6-201ENST00000377047 MCCP23508 829 aa17.35■□□□□ 0.37
GPC6-201ENST00000377047 TERF2IPQ9NYB0 399 aa17.35■□□□□ 0.37
GPC6-201ENST00000377047 IPO8O15397 1037 aaKnown RBP17.35■□□□□ 0.37
GPC6-201ENST00000377047 CYB5RLQ6IPT4 315 aa17.35■□□□□ 0.37
GPC6-201ENST00000377047 TMX4Q9H1E5 349 aaPredicted RBP17.34■□□□□ 0.37
GPC6-201ENST00000377047 DNTTIP2Q5QJE6 756 aaKnown RBP17.33■□□□□ 0.37
GPC6-201ENST00000377047 GLIPR1L2Q4G1C9 344 aa17.32■□□□□ 0.36
GPC6-201ENST00000377047 RSPH4AQ5TD94 716 aa17.32■□□□□ 0.36
GPC6-201ENST00000377047 CLSTN1O94985 981 aa17.32■□□□□ 0.36
GPC6-201ENST00000377047 LTV1Q96GA3 475 aaPredicted RBP17.32■□□□□ 0.36
GPC6-201ENST00000377047 GOLGA6L4A6NEF3 574 aa17.31■□□□□ 0.36
GPC6-201ENST00000377047 HSCBQ8IWL3 235 aa17.31■□□□□ 0.36
GPC6-201ENST00000377047 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.31■□□□□ 0.366e-6■■□□□ 14
GPC6-201ENST00000377047 AMPHP49418 695 aa17.3■□□□□ 0.36
GPC6-201ENST00000377047 ITPRIPQ8IWB1 547 aa17.3■□□□□ 0.36
GPC6-201ENST00000377047 CHMP3Q9Y3E7 222 aa17.3■□□□□ 0.36
GPC6-201ENST00000377047 STK31Q9BXU1 1019 aa17.29■□□□□ 0.36
GPC6-201ENST00000377047 RALBP1Q15311 655 aa17.29■□□□□ 0.36
GPC6-201ENST00000377047 CCER2I3L3R5 266 aa17.28■□□□□ 0.36
GPC6-201ENST00000377047 TRAK1Q9UPV9 953 aa17.28■□□□□ 0.36
GPC6-201ENST00000377047 GOLGA6L6A8MZA4 724 aa17.28■□□□□ 0.36
GPC6-201ENST00000377047 KIAA1211Q6ZU35 1233 aa17.27■□□□□ 0.36
GPC6-201ENST00000377047 GNL2Q13823 731 aaKnown RBP17.27■□□□□ 0.36
GPC6-201ENST00000377047 TAF7LQ5H9L4 462 aa17.27■□□□□ 0.36
GPC6-201ENST00000377047 SPRYD3Q8NCJ5 442 aa17.26■□□□□ 0.35
GPC6-201ENST00000377047 FANCD2Q9BXW9 1451 aa17.26■□□□□ 0.35
GPC6-201ENST00000377047 GORABQ5T7V8 394 aa17.26■□□□□ 0.35
GPC6-201ENST00000377047 ATAD2BQ9ULI0 1458 aa17.25■□□□□ 0.35
GPC6-201ENST00000377047 OSCARQ8IYS5 282 aa17.25■□□□□ 0.35
GPC6-201ENST00000377047 PTPRGP23470 1445 aa17.24■□□□□ 0.35
GPC6-201ENST00000377047 CFAP44Q96MT7 982 aa17.24■□□□□ 0.35
GPC6-201ENST00000377047 L3MBTL2Q969R5 705 aa17.24■□□□□ 0.35
GPC6-201ENST00000377047 CHMP4AQ9BY43 222 aa17.24■□□□□ 0.35
GPC6-201ENST00000377047 CCDC146Q8IYE0 955 aa17.23■□□□□ 0.35
GPC6-201ENST00000377047 G3V3G9 751 aa17.23■□□□□ 0.35
GPC6-201ENST00000377047 DCAF8Q5TAQ9 597 aa17.23■□□□□ 0.35
GPC6-201ENST00000377047 SLC4A10Q6U841 1118 aa17.21■□□□□ 0.35
GPC6-201ENST00000377047 SMC4Q9NTJ3 1288 aa17.21■□□□□ 0.35
GPC6-201ENST00000377047 RCAN3Q9UKA8 241 aa17.21■□□□□ 0.35
GPC6-201ENST00000377047 NOP58Q9Y2X3 529 aaKnown RBP17.2■□□□□ 0.34
GPC6-201ENST00000377047 NCBP3Q53F19 620 aaKnown RBP17.19■□□□□ 0.34
GPC6-201ENST00000377047 RWDD1Q9H446 243 aaPredicted RBP17.19■□□□□ 0.34
GPC6-201ENST00000377047 SMARCA4P51532 1647 aa17.18■□□□□ 0.34
GPC6-201ENST00000377047 NRDCO43847 1150 aa17.18■□□□□ 0.34
GPC6-201ENST00000377047 CCDC144AA2RUR9 1427 aa17.18■□□□□ 0.34
GPC6-201ENST00000377047 GTF2E1P29083 439 aaPredicted RBP17.17■□□□□ 0.34
GPC6-201ENST00000377047 EVA1CP58658 441 aa17.17■□□□□ 0.34
GPC6-201ENST00000377047 GPATCH3Q96I76 525 aa17.17■□□□□ 0.34
GPC6-201ENST00000377047 LMOD3Q0VAK6 560 aa17.17■□□□□ 0.34
GPC6-201ENST00000377047 AEBP2Q6ZN18 517 aaPredicted RBP17.15■□□□□ 0.34
GPC6-201ENST00000377047 UACAQ9BZF9 1416 aa17.14■□□□□ 0.34
GPC6-201ENST00000377047 TRIM6-TRIM34B2RNG4 842 aa17.14■□□□□ 0.33
GPC6-201ENST00000377047 VGFO15240 615 aaPredicted RBP17.14■□□□□ 0.33
GPC6-201ENST00000377047 HDAC5Q9UQL6 1122 aa17.14■□□□□ 0.33
GPC6-201ENST00000377047 HMMRO75330 724 aa17.13■□□□□ 0.33
GPC6-201ENST00000377047 FAM69CQ0P6D2 419 aa17.13■□□□□ 0.33
GPC6-201ENST00000377047 COG3Q96JB2 828 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms