RNA–Protein interactions for RNA: ENST00000376568.7

DDR1-225, Transcript of discoidin domain receptor tyrosine kinase 1, human

APPRIS ALT2 TSL 1 (best) BASIC

Gene DDR1, Length 3,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-225	ENST00000376568	UACA	Q9BZF9	1416 aa		18.8	■□□□□ 0.6
DDR1-225	ENST00000376568	EIF4G3	O43432	1585 aa	Known RBP	18.79	■□□□□ 0.6
DDR1-225	ENST00000376568	L3MBTL2	Q969R5	705 aa		18.77	■□□□□ 0.6
DDR1-225	ENST00000376568	SCAPER	Q9BY12	1400 aa		18.76	■□□□□ 0.59
DDR1-225	ENST00000376568	FGD6	Q6ZV73	1430 aa		18.76	■□□□□ 0.59
DDR1-225	ENST00000376568	ARHGEF11	O15085	1522 aa		18.76	■□□□□ 0.59
DDR1-225	ENST00000376568	SOX12	O15370	315 aa		18.76	■□□□□ 0.59
DDR1-225	ENST00000376568	TNNT2	P45379	298 aa	Predicted RBP	18.75	■□□□□ 0.59
DDR1-225	ENST00000376568	LMOD2	Q6P5Q4	547 aa		18.75	■□□□□ 0.59
DDR1-225	ENST00000376568	EIF4G2	P78344	907 aa	Known RBP eCLIP	18.75	■□□□□ 0.59	8e-8	■■■■■ 39.6
DDR1-225	ENST00000376568	FAM9B	Q8IZU0	186 aa		18.75	■□□□□ 0.59
DDR1-225	ENST00000376568	WDR62	O43379	1518 aa		18.74	■□□□□ 0.59
DDR1-225	ENST00000376568	MYOM3	Q5VTT5	1437 aa		18.72	■□□□□ 0.59
DDR1-225	ENST00000376568	BCL11A	Q9H165	835 aa		18.72	■□□□□ 0.59
DDR1-225	ENST00000376568	EPRS	P07814	1512 aa	Known RBP	18.72	■□□□□ 0.59
DDR1-225	ENST00000376568	MIER1	Q8N108	512 aa		18.71	■□□□□ 0.59
DDR1-225	ENST00000376568	KANK1	Q14678	1352 aa		18.7	■□□□□ 0.58
DDR1-225	ENST00000376568	ARHGAP5	Q13017	1502 aa		18.7	■□□□□ 0.58
DDR1-225	ENST00000376568	KIF15	Q9NS87	1388 aa		18.7	■□□□□ 0.58
DDR1-225	ENST00000376568	POGK	Q9P215	609 aa		18.7	■□□□□ 0.58
DDR1-225	ENST00000376568	PPM1G	O15355	546 aa	Predicted RBP	18.67	■□□□□ 0.58
DDR1-225	ENST00000376568	PCF11	O94913	1555 aa	Known RBP	18.67	■□□□□ 0.58
DDR1-225	ENST00000376568	TRO	Q12816	1431 aa	Predicted RBP	18.67	■□□□□ 0.58
DDR1-225	ENST00000376568	CEBPA	P49715	358 aa	Predicted RBP	18.66	■□□□□ 0.58
DDR1-225	ENST00000376568	FYCO1	Q9BQS8	1478 aa		18.64	■□□□□ 0.57
DDR1-225	ENST00000376568	RSPH4A	Q5TD94	716 aa		18.63	■□□□□ 0.57
DDR1-225	ENST00000376568	TRAK1	Q9UPV9	953 aa		18.63	■□□□□ 0.57
DDR1-225	ENST00000376568	CUL7	Q14999	1698 aa		18.62	■□□□□ 0.57
DDR1-225	ENST00000376568	DHX57	Q6P158	1386 aa	Known RBP	18.61	■□□□□ 0.57
DDR1-225	ENST00000376568	CD109	Q6YHK3	1445 aa		18.6	■□□□□ 0.57
DDR1-225	ENST00000376568		A0A0G2JS52	829 aa		18.59	■□□□□ 0.57
DDR1-225	ENST00000376568	ATP10B	O94823	1461 aa		18.59	■□□□□ 0.57
DDR1-225	ENST00000376568	HSPA5	P11021	654 aa	Known RBP	18.58	■□□□□ 0.57
DDR1-225	ENST00000376568	CC2D1B	Q5T0F9	858 aa	Known RBP	18.58	■□□□□ 0.56
DDR1-225	ENST00000376568	ADAMTS12	P58397	1594 aa		18.58	■□□□□ 0.56
DDR1-225	ENST00000376568	TARBP1	Q13395	1621 aa	Known RBP	18.57	■□□□□ 0.56
DDR1-225	ENST00000376568	EFCAB5	A4FU69	1503 aa		18.57	■□□□□ 0.56
DDR1-225	ENST00000376568	TMEM132E	Q6IEE7	984 aa		18.57	■□□□□ 0.56
DDR1-225	ENST00000376568	THOC2	Q8NI27	1593 aa	Known RBP	18.57	■□□□□ 0.56
DDR1-225	ENST00000376568	NEFL	P07196	543 aa		18.56	■□□□□ 0.56
DDR1-225	ENST00000376568	SRPK2	P78362	688 aa	Known RBP	18.56	■□□□□ 0.56
DDR1-225	ENST00000376568	ANKRD50	Q9ULJ7	1429 aa		18.56	■□□□□ 0.56
DDR1-225	ENST00000376568	TIAM1	Q13009	1591 aa		18.54	■□□□□ 0.56
DDR1-225	ENST00000376568	FBXO31	Q5XUX0	539 aa	Predicted RBP	18.53	■□□□□ 0.56
DDR1-225	ENST00000376568	RBM33	Q96EV2	1170 aa	Known RBP	18.52	■□□□□ 0.56
DDR1-225	ENST00000376568	NUP153	P49790	1475 aa	Known RBP	18.52	■□□□□ 0.56
DDR1-225	ENST00000376568	ASXL2	Q76L83	1435 aa		18.51	■□□□□ 0.55
DDR1-225	ENST00000376568	MRS2	Q9HD23	443 aa		18.51	■□□□□ 0.55
DDR1-225	ENST00000376568	HNRNPU	Q00839	825 aa	Known RBP eCLIP	18.5	■□□□□ 0.55
DDR1-225	ENST00000376568	DISP1	Q96F81	1524 aa		18.49	■□□□□ 0.55
DDR1-225	ENST00000376568	NUP160	Q12769	1436 aa		18.49	■□□□□ 0.55
DDR1-225	ENST00000376568	CEP170	Q5SW79	1584 aa		18.49	■□□□□ 0.55
DDR1-225	ENST00000376568	C9orf84	Q5VXU9	1444 aa		18.48	■□□□□ 0.55
DDR1-225	ENST00000376568	ST20-MTHFS	A0A0A6YYL1	179 aa		18.48	■□□□□ 0.55
DDR1-225	ENST00000376568	ABCA5	Q8WWZ7	1642 aa		18.47	■□□□□ 0.55
DDR1-225	ENST00000376568	ERCC6L2	Q5T890	1561 aa		18.47	■□□□□ 0.55
DDR1-225	ENST00000376568	NEUROD2	Q15784	382 aa		18.46	■□□□□ 0.55
DDR1-225	ENST00000376568	HECW1	Q76N89	1606 aa		18.45	■□□□□ 0.54
DDR1-225	ENST00000376568	SLC26A8	Q96RN1	970 aa		18.45	■□□□□ 0.54
DDR1-225	ENST00000376568	ROCK2	O75116	1388 aa	Known RBP	18.44	■□□□□ 0.54
DDR1-225	ENST00000376568	PAK3	O75914	559 aa	Predicted RBP	18.43	■□□□□ 0.54
DDR1-225	ENST00000376568	HAP1	P54257	671 aa	Predicted RBP	18.43	■□□□□ 0.54
DDR1-225	ENST00000376568	CCDC144A	A2RUR9	1427 aa		18.43	■□□□□ 0.54
DDR1-225	ENST00000376568	NBPF1	Q3BBV0	1214 aa		18.43	■□□□□ 0.54
DDR1-225	ENST00000376568	PBRM1	Q86U86	1689 aa		18.42	■□□□□ 0.54
DDR1-225	ENST00000376568	MINK1	Q8N4C8	1332 aa	Predicted RBP	18.42	■□□□□ 0.54
DDR1-225	ENST00000376568	CFAP70	Q5T0N1	1121 aa		18.42	■□□□□ 0.54
DDR1-225	ENST00000376568	PTPRK	Q15262	1439 aa		18.4	■□□□□ 0.54
DDR1-225	ENST00000376568	EID1	Q9Y6B2	187 aa		18.39	■□□□□ 0.53
DDR1-225	ENST00000376568	DAPK1	P53355	1430 aa		18.39	■□□□□ 0.53
DDR1-225	ENST00000376568	RRBP1	Q9P2E9	1410 aa	Known RBP	18.39	■□□□□ 0.53
DDR1-225	ENST00000376568	KNSTRN	Q9Y448	316 aa		18.39	■□□□□ 0.53
DDR1-225	ENST00000376568	ADGRL1	O94910	1474 aa		18.38	■□□□□ 0.53
DDR1-225	ENST00000376568	EHBP1L1	Q8N3D4	1523 aa		18.38	■□□□□ 0.53
DDR1-225	ENST00000376568	ABCC5	O15440	1437 aa		18.38	■□□□□ 0.53
DDR1-225	ENST00000376568	AEBP2	Q6ZN18	517 aa	Predicted RBP	18.37	■□□□□ 0.53
DDR1-225	ENST00000376568	FANCA	O15360	1455 aa		18.37	■□□□□ 0.53
DDR1-225	ENST00000376568	IRX6	P78412	446 aa	Predicted RBP	18.37	■□□□□ 0.53
DDR1-225	ENST00000376568	KIAA0556	O60303	1618 aa		18.37	■□□□□ 0.53
DDR1-225	ENST00000376568	GPATCH8	Q9UKJ3	1502 aa	Known RBP	18.36	■□□□□ 0.53
DDR1-225	ENST00000376568	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	18.35	■□□□□ 0.53
DDR1-225	ENST00000376568	NBPF8	Q3BBV2	869 aa		18.34	■□□□□ 0.53
DDR1-225	ENST00000376568	CAMSAP2	Q08AD1	1489 aa		18.34	■□□□□ 0.53
DDR1-225	ENST00000376568	TRAPPC8	Q9Y2L5	1435 aa		18.33	■□□□□ 0.53
DDR1-225	ENST00000376568	TMF1	P82094	1093 aa		18.33	■□□□□ 0.52
DDR1-225	ENST00000376568	TXNDC2	Q86VQ3	553 aa		18.32	■□□□□ 0.52
DDR1-225	ENST00000376568	NAIP	Q13075	1403 aa		18.32	■□□□□ 0.52
DDR1-225	ENST00000376568	UGGT2	Q9NYU1	1516 aa		18.32	■□□□□ 0.52
DDR1-225	ENST00000376568	HDGF	P51858	240 aa	Known RBP	18.32	■□□□□ 0.52
DDR1-225	ENST00000376568	PLEKHH2	Q8IVE3	1493 aa		18.32	■□□□□ 0.52
DDR1-225	ENST00000376568	RAPGEF6	Q8TEU7	1601 aa		18.31	■□□□□ 0.52
DDR1-225	ENST00000376568	NEFM	P07197	916 aa		18.3	■□□□□ 0.52
DDR1-225	ENST00000376568	CLSPN	Q9HAW4	1339 aa		18.3	■□□□□ 0.52
DDR1-225	ENST00000376568	AKNA	Q7Z591	1439 aa		18.29	■□□□□ 0.52
DDR1-225	ENST00000376568	MIA2	Q96PC5	1412 aa		18.29	■□□□□ 0.52
DDR1-225	ENST00000376568	U2SURP	O15042	1029 aa	Known RBP	18.29	■□□□□ 0.52
DDR1-225	ENST00000376568	PELP1	Q8IZL8	1130 aa	Known RBP	18.28	■□□□□ 0.52
DDR1-225	ENST00000376568	GTF3C3	Q9Y5Q9	886 aa		18.28	■□□□□ 0.52
DDR1-225	ENST00000376568	SUPT6H	Q7KZ85	1726 aa	Known RBP	18.28	■□□□□ 0.52
DDR1-225	ENST00000376568	WDR43	Q15061	677 aa	Known RBP eCLIP	18.28	■□□□□ 0.52

Retrieved 100 of 20,778 RNA–protein pairs in 56 ms