RNA–Protein interactions for RNA: ENST00000374487.6

HMGCL-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 2

Gene HMGCL, Length 2,151 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-202ENST00000374487 FAM50AQ14320 339 aaKnown RBP17.77■□□□□ 0.44
HMGCL-202ENST00000374487 CCDC18Q5T9S5 1454 aa17.76■□□□□ 0.43
HMGCL-202ENST00000374487 TEX14Q8IWB6 1497 aa17.75■□□□□ 0.43
HMGCL-202ENST00000374487 RAPGEF3O95398 923 aa17.72■□□□□ 0.43
HMGCL-202ENST00000374487 MTUS2Q5JR59 1369 aa17.69■□□□□ 0.42
HMGCL-202ENST00000374487 RAB3GAP2Q9H2M9 1393 aa17.69■□□□□ 0.42
HMGCL-202ENST00000374487 FANCAO15360 1455 aa17.68■□□□□ 0.42
HMGCL-202ENST00000374487 PLCH2O75038 1416 aa17.68■□□□□ 0.42
HMGCL-202ENST00000374487 SETD5Q9C0A6 1442 aa17.67■□□□□ 0.42
HMGCL-202ENST00000374487 AKNAQ7Z591 1439 aa17.65■□□□□ 0.42
HMGCL-202ENST00000374487 NEO1Q92859 1461 aa17.63■□□□□ 0.41
HMGCL-202ENST00000374487 ZNF777Q9ULD5 760 aaPredicted RBP17.63■□□□□ 0.41
HMGCL-202ENST00000374487 ARAP3Q8WWN8 1544 aa17.62■□□□□ 0.41
HMGCL-202ENST00000374487 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.62■□□□□ 0.41
HMGCL-202ENST00000374487 EFCAB2Q5VUJ9 269 aa17.62■□□□□ 0.41
HMGCL-202ENST00000374487 ARHGAP5Q13017 1502 aa17.61■□□□□ 0.41
HMGCL-202ENST00000374487 MYO5CQ9NQX4 1742 aa17.61■□□□□ 0.41
HMGCL-202ENST00000374487 CDC42BPBQ9Y5S2 1711 aa17.6■□□□□ 0.41
HMGCL-202ENST00000374487 FGD6Q6ZV73 1430 aa17.6■□□□□ 0.41
HMGCL-202ENST00000374487 SCAPERQ9BY12 1400 aa17.6■□□□□ 0.41
HMGCL-202ENST00000374487 GPATCH8Q9UKJ3 1502 aaKnown RBP17.59■□□□□ 0.41
HMGCL-202ENST00000374487 FRMPD1Q5SYB0 1578 aa17.59■□□□□ 0.41
HMGCL-202ENST00000374487 ADGRL1O94910 1474 aa17.58■□□□□ 0.41
HMGCL-202ENST00000374487 ZNF644Q9H582 1327 aaPredicted RBP17.58■□□□□ 0.41
HMGCL-202ENST00000374487 CDC42BPAQ5VT25 1732 aa17.58■□□□□ 0.4
HMGCL-202ENST00000374487 EHBP1L1Q8N3D4 1523 aa17.58■□□□□ 0.4
HMGCL-202ENST00000374487 NCOA2Q15596 1464 aa17.57■□□□□ 0.4
HMGCL-202ENST00000374487 AFAP1Q8N556 730 aa17.57■□□□□ 0.4
HMGCL-202ENST00000374487 DENND4BO75064 1496 aaPredicted RBP17.56■□□□□ 0.4
HMGCL-202ENST00000374487 PREX2Q70Z35 1606 aa17.56■□□□□ 0.4
HMGCL-202ENST00000374487 ARHGEF12Q9NZN5 1544 aa17.56■□□□□ 0.4
HMGCL-202ENST00000374487 CFDP1Q9UEE9 299 aaPredicted RBP17.55■□□□□ 0.4
HMGCL-202ENST00000374487 HNRNPMP52272 730 aaKnown RBP eCLIP17.54■□□□□ 0.4
HMGCL-202ENST00000374487 MYOM3Q5VTT5 1437 aa17.53■□□□□ 0.4
HMGCL-202ENST00000374487 TRAPPC8Q9Y2L5 1435 aa17.52■□□□□ 0.4
HMGCL-202ENST00000374487 RICTORQ6R327 1708 aa17.52■□□□□ 0.4
HMGCL-202ENST00000374487 CFAP74Q9C0B2 1584 aa17.52■□□□□ 0.4
HMGCL-202ENST00000374487 SUPT6HQ7KZ85 1726 aaKnown RBP17.52■□□□□ 0.39
HMGCL-202ENST00000374487 POGZQ7Z3K3 1410 aa17.51■□□□□ 0.39
HMGCL-202ENST00000374487 YEATS2Q9ULM3 1422 aa17.51■□□□□ 0.39
HMGCL-202ENST00000374487 SAMD9LQ8IVG5 1584 aa17.51■□□□□ 0.39
HMGCL-202ENST00000374487 KDM4FA0A1W2PPD8 638 aa17.5■□□□□ 0.39
HMGCL-202ENST00000374487 CENPBP07199 599 aaPredicted RBP17.5■□□□□ 0.39
HMGCL-202ENST00000374487 ABCC1P33527 1531 aa17.48■□□□□ 0.39
HMGCL-202ENST00000374487 MIER1Q8N108 512 aa17.47■□□□□ 0.39
HMGCL-202ENST00000374487 SYCP2Q9BX26 1530 aa17.47■□□□□ 0.39
HMGCL-202ENST00000374487 MYT1LQ9UL68 1186 aa17.46■□□□□ 0.39
HMGCL-202ENST00000374487 NEUROD1Q13562 356 aa17.46■□□□□ 0.39
HMGCL-202ENST00000374487 ACIN1Q9UKV3 1341 aaKnown RBP17.45■□□□□ 0.38
HMGCL-202ENST00000374487 PTPRKQ15262 1439 aa17.43■□□□□ 0.38
HMGCL-202ENST00000374487 SIN3AQ96ST3 1273 aa17.43■□□□□ 0.38
HMGCL-202ENST00000374487 HFM1A2PYH4 1435 aa17.43■□□□□ 0.38
HMGCL-202ENST00000374487 ITSN2Q9NZM3 1697 aa17.42■□□□□ 0.38
HMGCL-202ENST00000374487 SCAF1Q9H7N4 1312 aaKnown RBP17.42■□□□□ 0.38
HMGCL-202ENST00000374487 SIGLEC1Q9BZZ2 1709 aa17.42■□□□□ 0.38
HMGCL-202ENST00000374487 ZNF518AQ6AHZ1 1483 aa17.42■□□□□ 0.38
HMGCL-202ENST00000374487 ARID4BQ4LE39 1312 aaPredicted RBP17.42■□□□□ 0.38
HMGCL-202ENST00000374487 PTPN23Q9H3S7 1636 aa17.41■□□□□ 0.38
HMGCL-202ENST00000374487 ZMYM4Q5VZL5 1548 aa17.41■□□□□ 0.38
HMGCL-202ENST00000374487 ZFYVE16Q7Z3T8 1539 aa17.41■□□□□ 0.38
HMGCL-202ENST00000374487 TCOF1Q13428 1488 aaKnown RBP17.41■□□□□ 0.38
HMGCL-202ENST00000374487 MIA2Q96PC5 1412 aa17.4■□□□□ 0.38
HMGCL-202ENST00000374487 TIMELESSQ9UNS1 1208 aa17.4■□□□□ 0.38
HMGCL-202ENST00000374487 KDM5CP41229 1560 aa17.4■□□□□ 0.38
HMGCL-202ENST00000374487 CAMSAP2Q08AD1 1489 aa17.4■□□□□ 0.38
HMGCL-202ENST00000374487 MBD5Q9P267 1494 aa17.39■□□□□ 0.37
HMGCL-202ENST00000374487 ARHGEF40Q8TER5 1519 aa17.39■□□□□ 0.37
HMGCL-202ENST00000374487 MLECQ14165 292 aa17.39■□□□□ 0.37
HMGCL-202ENST00000374487 NAIPQ13075 1403 aa17.37■□□□□ 0.37
HMGCL-202ENST00000374487 KIAA1107Q9UPP5 1409 aa17.37■□□□□ 0.37
HMGCL-202ENST00000374487 YTHDC1Q96MU7 727 aaKnown RBP17.37■□□□□ 0.37
HMGCL-202ENST00000374487 SPAG9O60271 1321 aaKnown RBP17.36■□□□□ 0.37
HMGCL-202ENST00000374487 AEBP2Q6ZN18 517 aaPredicted RBP17.36■□□□□ 0.37
HMGCL-202ENST00000374487 CHIC2Q9UKJ5 165 aa17.36■□□□□ 0.37
HMGCL-202ENST00000374487 MAGI2Q86UL8 1455 aa17.35■□□□□ 0.37
HMGCL-202ENST00000374487 HECW2Q9P2P5 1572 aa17.35■□□□□ 0.37
HMGCL-202ENST00000374487 RRP7BPQ9NSQ0 103 aa17.35■□□□□ 0.37
HMGCL-202ENST00000374487 ABCA6Q8N139 1617 aa17.34■□□□□ 0.37
HMGCL-202ENST00000374487 ATP10AO60312 1499 aa17.34■□□□□ 0.37
HMGCL-202ENST00000374487 MLH3Q9UHC1 1453 aa17.34■□□□□ 0.37
HMGCL-202ENST00000374487 KIDINS220Q9ULH0 1771 aa17.34■□□□□ 0.37
HMGCL-202ENST00000374487 PLEKHH2Q8IVE3 1493 aa17.33■□□□□ 0.37
HMGCL-202ENST00000374487 DIP2CQ9Y2E4 1556 aa17.33■□□□□ 0.36
HMGCL-202ENST00000374487 PLPPR3Q6T4P5 718 aa17.3■□□□□ 0.36
HMGCL-202ENST00000374487 C9orf84Q5VXU9 1444 aa17.29■□□□□ 0.36
HMGCL-202ENST00000374487 ATP7AQ04656 1500 aa17.29■□□□□ 0.36
HMGCL-202ENST00000374487 PPP1R15AO75807 674 aaPredicted RBP17.28■□□□□ 0.36
HMGCL-202ENST00000374487 TONSLQ96HA7 1378 aa17.28■□□□□ 0.36
HMGCL-202ENST00000374487 CCDC141Q6ZP82 1450 aa17.28■□□□□ 0.36
HMGCL-202ENST00000374487 INO80Q9ULG1 1556 aaPredicted RBP17.27■□□□□ 0.36
HMGCL-202ENST00000374487 TRIM52Q96A61 297 aa17.27■□□□□ 0.36
HMGCL-202ENST00000374487 BCORL1Q5H9F3 1711 aa17.26■□□□□ 0.35
HMGCL-202ENST00000374487 ADAMTSL3P82987 1691 aa17.24■□□□□ 0.35
HMGCL-202ENST00000374487 ABCC5O15440 1437 aa17.24■□□□□ 0.35
HMGCL-202ENST00000374487 TSPY4P0CV99 314 aa17.24■□□□□ 0.35
HMGCL-202ENST00000374487 TSPY10P0CW01 314 aa17.24■□□□□ 0.35
HMGCL-202ENST00000374487 MADDQ8WXG6 1647 aa17.24■□□□□ 0.35
HMGCL-202ENST00000374487 ARHGEF5Q12774 1597 aa17.23■□□□□ 0.35
HMGCL-202ENST00000374487 GTF3C3Q9Y5Q9 886 aa17.23■□□□□ 0.35
HMGCL-202ENST00000374487 DAPK1P53355 1430 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms