RNA–Protein interactions for RNA: ENST00000372066.7

LDB3-204, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,598 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-204ENST00000372066 EFCAB2Q5VUJ9 269 aa21.31■■□□□ 1
LDB3-204ENST00000372066 BCORL1Q5H9F3 1711 aa21.31■■□□□ 1
LDB3-204ENST00000372066 MAP3K1Q13233 1512 aa21.31■■□□□ 1
LDB3-204ENST00000372066 CFAP74Q9C0B2 1584 aa21.3■■□□□ 1
LDB3-204ENST00000372066 POGZQ7Z3K3 1410 aa21.3■■□□□ 1
LDB3-204ENST00000372066 ARHGEF40Q8TER5 1519 aa21.3■■□□□ 1
LDB3-204ENST00000372066 MLECQ14165 292 aa21.3■■□□□ 1
LDB3-204ENST00000372066 YEATS2Q9ULM3 1422 aa21.29■■□□□ 1
LDB3-204ENST00000372066 MADDQ8WXG6 1647 aa21.28■■□□□ 1
LDB3-204ENST00000372066 RICTORQ6R327 1708 aa21.28■■□□□ 1
LDB3-204ENST00000372066 MAGI2Q86UL8 1455 aa21.27■□□□□ 0.99
LDB3-204ENST00000372066 ZFYVE16Q7Z3T8 1539 aa21.26■□□□□ 0.99
LDB3-204ENST00000372066 ZMYM4Q5VZL5 1548 aa21.25■□□□□ 0.99
LDB3-204ENST00000372066 HECW1Q76N89 1606 aa21.23■□□□□ 0.99
LDB3-204ENST00000372066 FBXO41Q8TF61 875 aa21.23■□□□□ 0.99
LDB3-204ENST00000372066 HSPA2P54652 639 aa21.22■□□□□ 0.99
LDB3-204ENST00000372066 PCF11O94913 1555 aaKnown RBP21.21■□□□□ 0.99
LDB3-204ENST00000372066 LMTK3Q96Q04 1460 aa21.21■□□□□ 0.99
LDB3-204ENST00000372066 TROQ12816 1431 aaPredicted RBP21.21■□□□□ 0.99
LDB3-204ENST00000372066 CCER1Q8TC90 406 aaPredicted RBP21.2■□□□□ 0.98
LDB3-204ENST00000372066 MYT1LQ9UL68 1186 aa21.2■□□□□ 0.98
LDB3-204ENST00000372066 TIAM1Q13009 1591 aa21.2■□□□□ 0.98
LDB3-204ENST00000372066 RIMS1Q86UR5 1692 aaKnown RBP21.2■□□□□ 0.98
LDB3-204ENST00000372066 AFAP1Q8N556 730 aa21.19■□□□□ 0.98
LDB3-204ENST00000372066 ATP10AO60312 1499 aa21.19■□□□□ 0.98
LDB3-204ENST00000372066 C9orf84Q5VXU9 1444 aa21.14■□□□□ 0.98
LDB3-204ENST00000372066 ARHGAP5Q13017 1502 aa21.14■□□□□ 0.97
LDB3-204ENST00000372066 RRBP1Q9P2E9 1410 aaKnown RBP21.14■□□□□ 0.97
LDB3-204ENST00000372066 KIF14Q15058 1648 aa21.13■□□□□ 0.97
LDB3-204ENST00000372066 SIGLEC1Q9BZZ2 1709 aa21.12■□□□□ 0.97
LDB3-204ENST00000372066 FYCO1Q9BQS8 1478 aa21.12■□□□□ 0.97
LDB3-204ENST00000372066 CEBPAP49715 358 aaPredicted RBP21.11■□□□□ 0.97
LDB3-204ENST00000372066 ZNF518AQ6AHZ1 1483 aa21.11■□□□□ 0.97
LDB3-204ENST00000372066 MYO5CQ9NQX4 1742 aa21.1■□□□□ 0.97
LDB3-204ENST00000372066 CASKIN1Q8WXD9 1431 aa21.09■□□□□ 0.97
LDB3-204ENST00000372066 ARHGEF12Q9NZN5 1544 aa21.06■□□□□ 0.96
LDB3-204ENST00000372066 CCDC18Q5T9S5 1454 aa21.05■□□□□ 0.96
LDB3-204ENST00000372066 KANK4Q5T7N3 995 aaPredicted RBP21.05■□□□□ 0.96
LDB3-204ENST00000372066 LRRC9Q6ZRR7 1453 aa21.04■□□□□ 0.96
LDB3-204ENST00000372066 TRAPPC8Q9Y2L5 1435 aa21.03■□□□□ 0.96
LDB3-204ENST00000372066 ZNF777Q9ULD5 760 aaPredicted RBP21.02■□□□□ 0.96
LDB3-204ENST00000372066 FER1L4A9Z1Z3 1794 aa21.02■□□□□ 0.96
LDB3-204ENST00000372066 KDM5CP41229 1560 aa21.02■□□□□ 0.95
LDB3-204ENST00000372066 ESF1Q9H501 851 aaKnown RBP21.02■□□□□ 0.95
LDB3-204ENST00000372066 MLH3Q9UHC1 1453 aa21.01■□□□□ 0.95
LDB3-204ENST00000372066 LRRIQ1Q96JM4 1722 aa21■□□□□ 0.95
LDB3-204ENST00000372066 CERKQ8TCT0 537 aa20.99■□□□□ 0.95
LDB3-204ENST00000372066 CCNB3Q8WWL7 1395 aa20.98■□□□□ 0.95
LDB3-204ENST00000372066 DIP2CQ9Y2E4 1556 aa20.96■□□□□ 0.95
LDB3-204ENST00000372066 CDC42BPBQ9Y5S2 1711 aa20.96■□□□□ 0.95
LDB3-204ENST00000372066 ABCC1P33527 1531 aa20.95■□□□□ 0.94
LDB3-204ENST00000372066 HNRNPMP52272 730 aaKnown RBP eCLIP20.94■□□□□ 0.94
LDB3-204ENST00000372066 DMRT2Q9Y5R5 561 aa20.94■□□□□ 0.94
LDB3-204ENST00000372066 PREX2Q70Z35 1606 aa20.94■□□□□ 0.94
LDB3-204ENST00000372066 UHRF1BP1Q6BDS2 1440 aa20.93■□□□□ 0.94
LDB3-204ENST00000372066 REREQ9P2R6 1566 aa20.92■□□□□ 0.94
LDB3-204ENST00000372066 CFDP1Q9UEE9 299 aaPredicted RBP20.92■□□□□ 0.94
LDB3-204ENST00000372066 SPAG9O60271 1321 aaKnown RBP20.92■□□□□ 0.94
LDB3-204ENST00000372066 CLSPNQ9HAW4 1339 aa20.92■□□□□ 0.94
LDB3-204ENST00000372066 ABCA6Q8N139 1617 aa20.9■□□□□ 0.94
LDB3-204ENST00000372066 AGLP35573 1532 aa20.9■□□□□ 0.94
LDB3-204ENST00000372066 GPATCH8Q9UKJ3 1502 aaKnown RBP20.9■□□□□ 0.94
LDB3-204ENST00000372066 PREX1Q8TCU6 1659 aa20.88■□□□□ 0.93
LDB3-204ENST00000372066 MTUS2Q5JR59 1369 aa20.86■□□□□ 0.93
LDB3-204ENST00000372066 ITSN2Q9NZM3 1697 aa20.86■□□□□ 0.93
LDB3-204ENST00000372066 CDC42BPAQ5VT25 1732 aa20.85■□□□□ 0.93
LDB3-204ENST00000372066 CNTLNQ9NXG0 1405 aa20.85■□□□□ 0.93
LDB3-204ENST00000372066 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.85■□□□□ 0.93
LDB3-204ENST00000372066 SAMD9LQ8IVG5 1584 aa20.84■□□□□ 0.93
LDB3-204ENST00000372066 KIDINS220Q9ULH0 1771 aa20.83■□□□□ 0.93
LDB3-204ENST00000372066 KIAA1107Q9UPP5 1409 aa20.83■□□□□ 0.93
LDB3-204ENST00000372066 SETD1BQ9UPS6 1966 aaKnown RBP20.83■□□□□ 0.92
LDB3-204ENST00000372066 SYCP2Q9BX26 1530 aa20.83■□□□□ 0.92
LDB3-204ENST00000372066 EHBP1L1Q8N3D4 1523 aa20.81■□□□□ 0.92
LDB3-204ENST00000372066 PLEKHH2Q8IVE3 1493 aa20.81■□□□□ 0.92
LDB3-204ENST00000372066 ZMYM3Q14202 1370 aa20.81■□□□□ 0.92
LDB3-204ENST00000372066 SUPT6HQ7KZ85 1726 aaKnown RBP20.8■□□□□ 0.92
LDB3-204ENST00000372066 ZNF644Q9H582 1327 aaPredicted RBP20.79■□□□□ 0.92
LDB3-204ENST00000372066 C3P01024 1663 aa20.79■□□□□ 0.92
LDB3-204ENST00000372066 GGT6Q6P531 493 aa20.79■□□□□ 0.92
LDB3-204ENST00000372066 PTPRTO14522 1441 aa20.77■□□□□ 0.92
LDB3-204ENST00000372066 STRCQ7RTU9 1775 aa20.77■□□□□ 0.91
LDB3-204ENST00000372066 DHX57Q6P158 1386 aaKnown RBP20.76■□□□□ 0.91
LDB3-204ENST00000372066 A2MP01023 1474 aa20.75■□□□□ 0.91
LDB3-204ENST00000372066 ATP7AQ04656 1500 aa20.74■□□□□ 0.91
LDB3-204ENST00000372066 NPATQ14207 1427 aa20.74■□□□□ 0.91
LDB3-204ENST00000372066 PPP6R1Q9UPN7 881 aa20.72■□□□□ 0.91
LDB3-204ENST00000372066 NCOA1Q15788 1441 aa20.71■□□□□ 0.91
LDB3-204ENST00000372066 NCKAP5LQ9HCH0 1330 aa20.7■□□□□ 0.9
LDB3-204ENST00000372066 FGD6Q6ZV73 1430 aa20.69■□□□□ 0.9
LDB3-204ENST00000372066 SETD5Q9C0A6 1442 aa20.67■□□□□ 0.9
LDB3-204ENST00000372066 MBD5Q9P267 1494 aa20.67■□□□□ 0.9
LDB3-204ENST00000372066 INO80Q9ULG1 1556 aaPredicted RBP20.67■□□□□ 0.9
LDB3-204ENST00000372066 NCOA2Q15596 1464 aa20.66■□□□□ 0.9
LDB3-204ENST00000372066 PLXNC1O60486 1568 aa20.66■□□□□ 0.9
LDB3-204ENST00000372066 PTPRKQ15262 1439 aa20.65■□□□□ 0.9
LDB3-204ENST00000372066 MYOM3Q5VTT5 1437 aa20.65■□□□□ 0.9
LDB3-204ENST00000372066 CAMSAP1Q5T5Y3 1602 aa20.65■□□□□ 0.9
LDB3-204ENST00000372066 MROH2AA6NES4 1674 aa20.64■□□□□ 0.9
LDB3-204ENST00000372066 RTEL1-TNFRSF6BF6WH68 1400 aa20.64■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms