RNA–Protein interactions for RNA: ENST00000369089.3

PRDM1-201, Transcript of PR/SET domain 1, humanhuman

TSL 1 (best) BASIC

Gene PRDM1, Length 4,675 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM1-201ENST00000369089 CSPP1Q1MSJ5 1256 aa13.28□□□□□ -0.28
PRDM1-201ENST00000369089 HOMEZQ8IX15 550 aa13.28□□□□□ -0.28
PRDM1-201ENST00000369089 NCBP3Q53F19 620 aaKnown RBP13.27□□□□□ -0.28
PRDM1-201ENST00000369089 WIZO95785 1651 aa13.27□□□□□ -0.29
PRDM1-201ENST00000369089 MS4A1P11836 297 aa13.26□□□□□ -0.29
PRDM1-201ENST00000369089 SLC4A3P48751 1232 aa13.26□□□□□ -0.29
PRDM1-201ENST00000369089 IRX3P78415 501 aaPredicted RBP13.26□□□□□ -0.29
PRDM1-201ENST00000369089 ABCC8Q09428 1581 aa13.25□□□□□ -0.29
PRDM1-201ENST00000369089 MRE11P49959 708 aa13.25□□□□□ -0.29
PRDM1-201ENST00000369089 CALRP27797 417 aaKnown RBP13.24□□□□□ -0.29
PRDM1-201ENST00000369089 KIAA1211Q6ZU35 1233 aa13.24□□□□□ -0.29
PRDM1-201ENST00000369089 KLHL34Q8N239 644 aa13.24□□□□□ -0.29
PRDM1-201ENST00000369089 SMARCA2P51531 1590 aa13.24□□□□□ -0.29
PRDM1-201ENST00000369089 R3HCC1Q9Y3T6 440 aaKnown RBP13.24□□□□□ -0.29
PRDM1-201ENST00000369089 GBP4Q96PP9 640 aa13.24□□□□□ -0.29
PRDM1-201ENST00000369089 GOLGA6L6A8MZA4 724 aa13.23□□□□□ -0.29
PRDM1-201ENST00000369089 PLCD3Q8N3E9 789 aa13.23□□□□□ -0.29
PRDM1-201ENST00000369089 ESPNB1AK53 854 aa13.22□□□□□ -0.29
PRDM1-201ENST00000369089 TOP2AP11388 1531 aaKnown RBP13.21□□□□□ -0.29
PRDM1-201ENST00000369089 C14orf37Q86TY3 774 aa13.21□□□□□ -0.29
PRDM1-201ENST00000369089 WASHC2AQ641Q2 1341 aa13.21□□□□□ -0.29
PRDM1-201ENST00000369089 WASHC2CQ9Y4E1 1318 aa13.21□□□□□ -0.29
PRDM1-201ENST00000369089 IPO4Q8TEX9 1081 aaKnown RBP13.2□□□□□ -0.3
PRDM1-201ENST00000369089 AEBP1Q8IUX7 1158 aa13.2□□□□□ -0.3
PRDM1-201ENST00000369089 GOLGA6L1Q8N7Z2 621 aa13.2□□□□□ -0.3
PRDM1-201ENST00000369089 DDX11L8A8MPP1 907 aa13.19□□□□□ -0.3
PRDM1-201ENST00000369089 MAPK8IP2Q13387 824 aaPredicted RBP13.19□□□□□ -0.3
PRDM1-201ENST00000369089 CUX2O14529 1486 aa13.19□□□□□ -0.3
PRDM1-201ENST00000369089 PRDM10Q9NQV6 1147 aa13.19□□□□□ -0.3
PRDM1-201ENST00000369089 FRAT2O75474 233 aaPredicted RBP13.19□□□□□ -0.3
PRDM1-201ENST00000369089 CARMIL1Q5VZK9 1371 aa13.19□□□□□ -0.3
PRDM1-201ENST00000369089 TSPY4P0CV99 314 aa13.19□□□□□ -0.3
PRDM1-201ENST00000369089 TSPY10P0CW01 314 aa13.19□□□□□ -0.3
PRDM1-201ENST00000369089 HSCBQ8IWL3 235 aa13.19□□□□□ -0.3
PRDM1-201ENST00000369089 CLCN1P35523 988 aa13.18□□□□□ -0.3
PRDM1-201ENST00000369089 ZBTB7CA1YPR0 619 aa13.18□□□□□ -0.3
PRDM1-201ENST00000369089 NPM1P06748 294 aaKnown RBP eCLIP13.17□□□□□ -0.3
PRDM1-201ENST00000369089 RRP7BPQ9NSQ0 103 aa13.16□□□□□ -0.3
PRDM1-201ENST00000369089 HSP90AB1P08238 724 aaKnown RBP13.16□□□□□ -0.3
PRDM1-201ENST00000369089 FTSJ3Q8IY81 847 aaKnown RBP13.16□□□□□ -0.3
PRDM1-201ENST00000369089 SPRYD3Q8NCJ5 442 aa13.16□□□□□ -0.3
PRDM1-201ENST00000369089 SMAP1Q8IYB5 467 aaPredicted RBP13.15□□□□□ -0.3
PRDM1-201ENST00000369089 TSPYL1Q9H0U9 437 aa13.15□□□□□ -0.3
PRDM1-201ENST00000369089 ATAD2BQ9ULI0 1458 aa13.15□□□□□ -0.3
PRDM1-201ENST00000369089 NUDCQ9Y266 331 aa13.14□□□□□ -0.31
PRDM1-201ENST00000369089 CGNQ9P2M7 1197 aaKnown RBP13.13□□□□□ -0.31
PRDM1-201ENST00000369089 PLEKHD1A6NEE1 506 aa13.13□□□□□ -0.31
PRDM1-201ENST00000369089 SKOR2Q2VWA4 1001 aaPredicted RBP13.13□□□□□ -0.31
PRDM1-201ENST00000369089 SMARCA4P51532 1647 aa13.13□□□□□ -0.31
PRDM1-201ENST00000369089 EIF4G2P78344 907 aaKnown RBP eCLIP13.12□□□□□ -0.31
PRDM1-201ENST00000369089 CC2D1BQ5T0F9 858 aaKnown RBP13.12□□□□□ -0.31
PRDM1-201ENST00000369089 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.12□□□□□ -0.31
PRDM1-201ENST00000369089 E9PSI1 815 aa13.12□□□□□ -0.31
PRDM1-201ENST00000369089 PLCB2Q00722 1185 aa13.12□□□□□ -0.31
PRDM1-201ENST00000369089 CHMP4AQ9BY43 222 aa13.12□□□□□ -0.31
PRDM1-201ENST00000369089 UQCRHLA0A096LP55 91 aa13.11□□□□□ -0.31
PRDM1-201ENST00000369089 UQCRHP07919 91 aa13.11□□□□□ -0.31
PRDM1-201ENST00000369089 ISY1Q9ULR0 285 aaKnown RBP13.11□□□□□ -0.31
PRDM1-201ENST00000369089 FAM161AQ3B820 660 aa13.1□□□□□ -0.31
PRDM1-201ENST00000369089 LETM1O95202 739 aaPredicted RBP13.1□□□□□ -0.31
PRDM1-201ENST00000369089 DNAJC2Q99543 621 aaKnown RBP13.1□□□□□ -0.31
PRDM1-201ENST00000369089 SIN3AQ96ST3 1273 aa13.09□□□□□ -0.31
PRDM1-201ENST00000369089 VPS8Q8N3P4 1428 aa13.09□□□□□ -0.31
PRDM1-201ENST00000369089 HSP90B1P14625 803 aaKnown RBP13.09□□□□□ -0.31
PRDM1-201ENST00000369089 DHX37Q8IY37 1157 aaKnown RBP13.09□□□□□ -0.31
PRDM1-201ENST00000369089 TULP1O00294 542 aaPredicted RBP13.08□□□□□ -0.32
PRDM1-201ENST00000369089 ERCC6Q03468 1493 aa13.08□□□□□ -0.32
PRDM1-201ENST00000369089 FHAD1B1AJZ9 1412 aa13.07□□□□□ -0.32
PRDM1-201ENST00000369089 CLGNO14967 610 aa13.07□□□□□ -0.32
PRDM1-201ENST00000369089 NOM1Q5C9Z4 860 aaKnown RBP13.07□□□□□ -0.32
PRDM1-201ENST00000369089 CADPSQ9ULU8 1353 aa13.07□□□□□ -0.32
PRDM1-201ENST00000369089 HMGN5P82970 282 aaKnown RBP13.07□□□□□ -0.32
PRDM1-201ENST00000369089 GTPBP4Q9BZE4 634 aaKnown RBP13.07□□□□□ -0.32
PRDM1-201ENST00000369089 CHGAP10645 457 aaKnown RBP13.06□□□□□ -0.32
PRDM1-201ENST00000369089 CCDC173Q0VFZ6 552 aa13.06□□□□□ -0.32
PRDM1-201ENST00000369089 CFDP1Q9UEE9 299 aaPredicted RBP13.06□□□□□ -0.32
PRDM1-201ENST00000369089 SETQ01105 290 aaPredicted RBP13.05□□□□□ -0.32
PRDM1-201ENST00000369089 VGLL3A8MV65 326 aa13.05□□□□□ -0.32
PRDM1-201ENST00000369089 RCAN3Q9UKA8 241 aa13.05□□□□□ -0.32
PRDM1-201ENST00000369089 CCNB3Q8WWL7 1395 aa13.05□□□□□ -0.32
PRDM1-201ENST00000369089 KIF20AO95235 890 aa13.04□□□□□ -0.32
PRDM1-201ENST00000369089 WWC1Q8IX03 1113 aa13.04□□□□□ -0.32
PRDM1-201ENST00000369089 TEX35Q5T0J7 233 aa13.04□□□□□ -0.32
PRDM1-201ENST00000369089 KDM2AQ9Y2K7 1162 aa13.04□□□□□ -0.32
PRDM1-201ENST00000369089 ZBED9Q6R2W3 1325 aa13.04□□□□□ -0.32
PRDM1-201ENST00000369089 PPP4R3BQ5MIZ7 849 aa13.04□□□□□ -0.32
PRDM1-201ENST00000369089 PDS5BQ9NTI5 1447 aa13.04□□□□□ -0.32
PRDM1-201ENST00000369089 TDRD9Q8NDG6 1382 aaKnown RBP13.03□□□□□ -0.32
PRDM1-201ENST00000369089 SENP3-EIF4A1A0A087X0R7 540 aa13.03□□□□□ -0.32
PRDM1-201ENST00000369089 KANK4Q5T7N3 995 aaPredicted RBP13.03□□□□□ -0.32
PRDM1-201ENST00000369089 BACH2Q9BYV9 841 aa13.03□□□□□ -0.32
PRDM1-201ENST00000369089 AXDND1Q5T1B0 1012 aaPredicted RBP13.02□□□□□ -0.32
PRDM1-201ENST00000369089 ZSCAN30Q86W11 494 aa13.02□□□□□ -0.32
PRDM1-201ENST00000369089 GRPEL1Q9HAV7 217 aa13.02□□□□□ -0.32
PRDM1-201ENST00000369089 KCNJ4P48050 445 aa13.02□□□□□ -0.33
PRDM1-201ENST00000369089 NASPP49321 788 aaPredicted RBP13.02□□□□□ -0.33
PRDM1-201ENST00000369089 CBX1P83916 185 aa13.02□□□□□ -0.33
PRDM1-201ENST00000369089 RRAGDQ9NQL2 400 aaPredicted RBP13.01□□□□□ -0.33
PRDM1-201ENST00000369089 KIF3AQ9Y496 699 aa13.01□□□□□ -0.33
PRDM1-201ENST00000369089 HTATSF1O43719 755 aaKnown RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms