RNA–Protein interactions for RNA: ENST00000368531.6

TPM3-211, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 1,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-211ENST00000368531 PREX2Q70Z35 1606 aa21.58■■□□□ 1.04
TPM3-211ENST00000368531 GPATCH8Q9UKJ3 1502 aaKnown RBP21.56■■□□□ 1.04
TPM3-211ENST00000368531 ZNF777Q9ULD5 760 aaPredicted RBP21.55■■□□□ 1.04
TPM3-211ENST00000368531 FANCAO15360 1455 aa21.55■■□□□ 1.04
TPM3-211ENST00000368531 ITSN2Q9NZM3 1697 aa21.54■■□□□ 1.04
TPM3-211ENST00000368531 EFCAB2Q5VUJ9 269 aa21.54■■□□□ 1.04
TPM3-211ENST00000368531 CFDP1Q9UEE9 299 aaPredicted RBP21.53■■□□□ 1.04
TPM3-211ENST00000368531 CFAP74Q9C0B2 1584 aa21.52■■□□□ 1.04
TPM3-211ENST00000368531 ARAP3Q8WWN8 1544 aa21.5■■□□□ 1.03
TPM3-211ENST00000368531 NEO1Q92859 1461 aa21.5■■□□□ 1.03
TPM3-211ENST00000368531 AKNAQ7Z591 1439 aa21.49■■□□□ 1.03
TPM3-211ENST00000368531 PHLDB1Q86UU1 1377 aa21.48■■□□□ 1.03
TPM3-211ENST00000368531 KDM6BO15054 1643 aa21.47■■□□□ 1.03
TPM3-211ENST00000368531 MYOM3Q5VTT5 1437 aa21.46■■□□□ 1.03
TPM3-211ENST00000368531 ZNF644Q9H582 1327 aaPredicted RBP21.46■■□□□ 1.03
TPM3-211ENST00000368531 SAMD9LQ8IVG5 1584 aa21.45■■□□□ 1.02
TPM3-211ENST00000368531 ADGRL1O94910 1474 aa21.45■■□□□ 1.02
TPM3-211ENST00000368531 COL17A1Q9UMD9 1497 aaPredicted RBP21.45■■□□□ 1.02
TPM3-211ENST00000368531 SCAPERQ9BY12 1400 aa21.43■■□□□ 1.02
TPM3-211ENST00000368531 RAPGEF3O95398 923 aa21.41■■□□□ 1.02
TPM3-211ENST00000368531 HNRNPMP52272 730 aaKnown RBP eCLIP21.41■■□□□ 1.027e-7■■■□□ 16.5
TPM3-211ENST00000368531 ABCC1P33527 1531 aa21.39■■□□□ 1.02
TPM3-211ENST00000368531 DENND4BO75064 1496 aaPredicted RBP21.39■■□□□ 1.02
TPM3-211ENST00000368531 CAMSAP2Q08AD1 1489 aa21.39■■□□□ 1.01
TPM3-211ENST00000368531 PTPN23Q9H3S7 1636 aa21.38■■□□□ 1.01
TPM3-211ENST00000368531 SYCP2Q9BX26 1530 aa21.38■■□□□ 1.01
TPM3-211ENST00000368531 ARHGEF12Q9NZN5 1544 aa21.38■■□□□ 1.01
TPM3-211ENST00000368531 FGD6Q6ZV73 1430 aa21.38■■□□□ 1.01
TPM3-211ENST00000368531 MIA2Q96PC5 1412 aa21.38■■□□□ 1.01
TPM3-211ENST00000368531 RICTORQ6R327 1708 aa21.36■■□□□ 1.01
TPM3-211ENST00000368531 PLEKHH2Q8IVE3 1493 aa21.35■■□□□ 1.01
TPM3-211ENST00000368531 FAM50AQ14320 339 aaKnown RBP21.35■■□□□ 1.01
TPM3-211ENST00000368531 AFAP1Q8N556 730 aa21.35■■□□□ 1.01
TPM3-211ENST00000368531 TRAPPC8Q9Y2L5 1435 aa21.34■■□□□ 1.01
TPM3-211ENST00000368531 FRMPD1Q5SYB0 1578 aa21.34■■□□□ 1.01
TPM3-211ENST00000368531 MYT1LQ9UL68 1186 aa21.33■■□□□ 1.01
TPM3-211ENST00000368531 POGZQ7Z3K3 1410 aa21.32■■□□□ 1
TPM3-211ENST00000368531 KIAA1107Q9UPP5 1409 aa21.32■■□□□ 1
TPM3-211ENST00000368531 ZNF518AQ6AHZ1 1483 aa21.29■■□□□ 1
TPM3-211ENST00000368531 TCOF1Q13428 1488 aaKnown RBP21.28■■□□□ 1
TPM3-211ENST00000368531 MBD5Q9P267 1494 aa21.28■■□□□ 1
TPM3-211ENST00000368531 ARHGEF5Q12774 1597 aa21.24■□□□□ 0.99
TPM3-211ENST00000368531 CCDC141Q6ZP82 1450 aa21.24■□□□□ 0.99
TPM3-211ENST00000368531 SPAG9O60271 1321 aaKnown RBP21.24■□□□□ 0.99
TPM3-211ENST00000368531 KDM5CP41229 1560 aa21.23■□□□□ 0.99
TPM3-211ENST00000368531 ITGAEP38570 1179 aa21.23■□□□□ 0.99
TPM3-211ENST00000368531 RSPH4AQ5TD94 716 aa21.23■□□□□ 0.99
TPM3-211ENST00000368531 ZMYM4Q5VZL5 1548 aa21.23■□□□□ 0.99
TPM3-211ENST00000368531 HECW2Q9P2P5 1572 aa21.23■□□□□ 0.99
TPM3-211ENST00000368531 RRBP1Q9P2E9 1410 aaKnown RBP21.21■□□□□ 0.99
TPM3-211ENST00000368531 TSPY4P0CV99 314 aa21.21■□□□□ 0.99
TPM3-211ENST00000368531 TSPY10P0CW01 314 aa21.21■□□□□ 0.99
TPM3-211ENST00000368531 DNMT1P26358 1616 aaKnown RBP21.21■□□□□ 0.99
TPM3-211ENST00000368531 KIDINS220Q9ULH0 1771 aa21.2■□□□□ 0.98
TPM3-211ENST00000368531 ABCC5O15440 1437 aa21.2■□□□□ 0.98
TPM3-211ENST00000368531 YEATS2Q9ULM3 1422 aa21.2■□□□□ 0.98
TPM3-211ENST00000368531 ZFYVE16Q7Z3T8 1539 aa21.19■□□□□ 0.98
TPM3-211ENST00000368531 CROCC2H7BZ55 1655 aa21.19■□□□□ 0.98
TPM3-211ENST00000368531 DAPK1P53355 1430 aa21.19■□□□□ 0.98
TPM3-211ENST00000368531 CHIC2Q9UKJ5 165 aa21.18■□□□□ 0.98
TPM3-211ENST00000368531 ATP7AQ04656 1500 aa21.18■□□□□ 0.98
TPM3-211ENST00000368531 MLH3Q9UHC1 1453 aa21.17■□□□□ 0.98
TPM3-211ENST00000368531 INO80Q9ULG1 1556 aaPredicted RBP21.16■□□□□ 0.98
TPM3-211ENST00000368531 MAGI2Q86UL8 1455 aa21.16■□□□□ 0.98
TPM3-211ENST00000368531 ABCA6Q8N139 1617 aa21.15■□□□□ 0.98
TPM3-211ENST00000368531 C9orf84Q5VXU9 1444 aa21.15■□□□□ 0.98
TPM3-211ENST00000368531 ARHGEF40Q8TER5 1519 aa21.14■□□□□ 0.98
TPM3-211ENST00000368531 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.13■□□□□ 0.973e-7■■□□□ 11.8
TPM3-211ENST00000368531 DIP2CQ9Y2E4 1556 aa21.13■□□□□ 0.97
TPM3-211ENST00000368531 MAST1Q9Y2H9 1570 aa21.12■□□□□ 0.97
TPM3-211ENST00000368531 RTEL1-TNFRSF6BF6WH68 1400 aa21.12■□□□□ 0.97
TPM3-211ENST00000368531 ATP10AO60312 1499 aa21.11■□□□□ 0.97
TPM3-211ENST00000368531 PTPRKQ15262 1439 aa21.1■□□□□ 0.97
TPM3-211ENST00000368531 ADGBQ8N7X0 1667 aa21.09■□□□□ 0.97
TPM3-211ENST00000368531 SHANK2Q9UPX8 1470 aa21.09■□□□□ 0.97
TPM3-211ENST00000368531 RRP7BPQ9NSQ0 103 aa21.09■□□□□ 0.97
TPM3-211ENST00000368531 ARID4BQ4LE39 1312 aaPredicted RBP21.08■□□□□ 0.97
TPM3-211ENST00000368531 SIGLEC1Q9BZZ2 1709 aa21.07■□□□□ 0.96
TPM3-211ENST00000368531 ANKRD30AQ9BXX3 1397 aa21.05■□□□□ 0.96
TPM3-211ENST00000368531 A2MP01023 1474 aa21.05■□□□□ 0.96
TPM3-211ENST00000368531 PLXNC1O60486 1568 aa21.04■□□□□ 0.96
TPM3-211ENST00000368531 KIF15Q9NS87 1388 aa21.02■□□□□ 0.96
TPM3-211ENST00000368531 MLECQ14165 292 aa21.02■□□□□ 0.96
TPM3-211ENST00000368531 NCOA1Q15788 1441 aa21.02■□□□□ 0.96
TPM3-211ENST00000368531 ADGRL2O95490 1459 aa21.01■□□□□ 0.95
TPM3-211ENST00000368531 DHX29Q7Z478 1369 aaKnown RBP20.99■□□□□ 0.95
TPM3-211ENST00000368531 REREQ9P2R6 1566 aa20.99■□□□□ 0.95
TPM3-211ENST00000368531 DUOX2Q9NRD8 1548 aa20.98■□□□□ 0.95
TPM3-211ENST00000368531 ROCK1Q13464 1354 aa20.97■□□□□ 0.95
TPM3-211ENST00000368531 KIF3BO15066 747 aa20.96■□□□□ 0.95
TPM3-211ENST00000368531 AGLP35573 1532 aa20.94■□□□□ 0.94
TPM3-211ENST00000368531 BCORL1Q5H9F3 1711 aa20.93■□□□□ 0.94
TPM3-211ENST00000368531 GGT6Q6P531 493 aa20.93■□□□□ 0.94
TPM3-211ENST00000368531 TRIM26Q12899 539 aaPredicted RBP20.91■□□□□ 0.94
TPM3-211ENST00000368531 ANKRD50Q9ULJ7 1429 aa20.9■□□□□ 0.94
TPM3-211ENST00000368531 ERBINQ96RT1 1412 aa20.89■□□□□ 0.94
TPM3-211ENST00000368531 GCC2Q8IWJ2 1684 aa20.89■□□□□ 0.93
TPM3-211ENST00000368531 EIF2AK4Q9P2K8 1649 aaKnown RBP20.89■□□□□ 0.93
TPM3-211ENST00000368531 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.88■□□□□ 0.931e-11■■■■■ 31.1
TPM3-211ENST00000368531 NAIPQ13075 1403 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms