RNA–Protein interactions for RNA: ENST00000368019.5

USF1-201, Transcript of upstream transcription factor 1, humanhuman

TSL 5 BASIC

Gene USF1, Length 998 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-201ENST00000368019 RIMS1Q86UR5 1692 aaKnown RBP17.48■□□□□ 0.39
USF1-201ENST00000368019 HECW1Q76N89 1606 aa17.48■□□□□ 0.39
USF1-201ENST00000368019 YEATS2Q9ULM3 1422 aa17.47■□□□□ 0.39
USF1-201ENST00000368019 ZFYVE16Q7Z3T8 1539 aa17.47■□□□□ 0.39
USF1-201ENST00000368019 MYO5CQ9NQX4 1742 aa17.47■□□□□ 0.39
USF1-201ENST00000368019 PCF11O94913 1555 aaKnown RBP17.46■□□□□ 0.39
USF1-201ENST00000368019 SCAPERQ9BY12 1400 aa17.46■□□□□ 0.39
USF1-201ENST00000368019 LMTK3Q96Q04 1460 aa17.45■□□□□ 0.38
USF1-201ENST00000368019 LRRIQ1Q96JM4 1722 aa17.45■□□□□ 0.38
USF1-201ENST00000368019 POGZQ7Z3K3 1410 aa17.45■□□□□ 0.38
USF1-201ENST00000368019 EHMT2Q96KQ7 1210 aa17.44■□□□□ 0.38
USF1-201ENST00000368019 KIF14Q15058 1648 aa17.43■□□□□ 0.38
USF1-201ENST00000368019 EFCAB2Q5VUJ9 269 aa17.41■□□□□ 0.38
USF1-201ENST00000368019 CDK11AQ9UQ88 783 aaPredicted RBP17.41■□□□□ 0.38
USF1-201ENST00000368019 TROQ12816 1431 aaPredicted RBP17.4■□□□□ 0.38
USF1-201ENST00000368019 ATP1B4Q9UN42 357 aaPredicted RBP17.4■□□□□ 0.38
USF1-201ENST00000368019 SCAF1Q9H7N4 1312 aaKnown RBP17.4■□□□□ 0.38
USF1-201ENST00000368019 CEP162Q5TB80 1403 aa17.39■□□□□ 0.38
USF1-201ENST00000368019 FER1L4A9Z1Z3 1794 aa17.39■□□□□ 0.37
USF1-201ENST00000368019 ATP10AO60312 1499 aa17.38■□□□□ 0.37
USF1-201ENST00000368019 CDC42BPBQ9Y5S2 1711 aa17.36■□□□□ 0.37
USF1-201ENST00000368019 FBXO41Q8TF61 875 aa17.36■□□□□ 0.37
USF1-201ENST00000368019 ARHGEF12Q9NZN5 1544 aa17.36■□□□□ 0.37
USF1-201ENST00000368019 KDM5CP41229 1560 aa17.36■□□□□ 0.37
USF1-201ENST00000368019 C9orf84Q5VXU9 1444 aa17.35■□□□□ 0.37
USF1-201ENST00000368019 CLIP1P30622 1438 aa17.34■□□□□ 0.37
USF1-201ENST00000368019 ZNF518AQ6AHZ1 1483 aa17.34■□□□□ 0.37
USF1-201ENST00000368019 ARHGAP5Q13017 1502 aa17.33■□□□□ 0.37
USF1-201ENST00000368019 MLECQ14165 292 aa17.33■□□□□ 0.36
USF1-201ENST00000368019 CASKIN1Q8WXD9 1431 aa17.32■□□□□ 0.36
USF1-201ENST00000368019 HSPA2P54652 639 aa17.32■□□□□ 0.36
USF1-201ENST00000368019 AFAP1Q8N556 730 aa17.31■□□□□ 0.36
USF1-201ENST00000368019 CCER1Q8TC90 406 aaPredicted RBP17.31■□□□□ 0.36
USF1-201ENST00000368019 PREX2Q70Z35 1606 aa17.3■□□□□ 0.36
USF1-201ENST00000368019 ACIN1Q9UKV3 1341 aaKnown RBP17.29■□□□□ 0.36
USF1-201ENST00000368019 REREQ9P2R6 1566 aa17.29■□□□□ 0.36
USF1-201ENST00000368019 DIP2CQ9Y2E4 1556 aa17.29■□□□□ 0.36
USF1-201ENST00000368019 PLPPR3Q6T4P5 718 aa17.29■□□□□ 0.36
USF1-201ENST00000368019 CCDC18Q5T9S5 1454 aa17.29■□□□□ 0.36
USF1-201ENST00000368019 SETD1BQ9UPS6 1966 aaKnown RBP17.28■□□□□ 0.36
USF1-201ENST00000368019 MLH3Q9UHC1 1453 aa17.28■□□□□ 0.36
USF1-201ENST00000368019 CDC42BPAQ5VT25 1732 aa17.27■□□□□ 0.36
USF1-201ENST00000368019 ABCC1P33527 1531 aa17.26■□□□□ 0.35
USF1-201ENST00000368019 PREX1Q8TCU6 1659 aa17.26■□□□□ 0.35
USF1-201ENST00000368019 ABCA6Q8N139 1617 aa17.26■□□□□ 0.35
USF1-201ENST00000368019 ITSN2Q9NZM3 1697 aa17.26■□□□□ 0.35
USF1-201ENST00000368019 TRAPPC8Q9Y2L5 1435 aa17.25■□□□□ 0.35
USF1-201ENST00000368019 CENPBP07199 599 aaPredicted RBP17.24■□□□□ 0.35
USF1-201ENST00000368019 FYCO1Q9BQS8 1478 aa17.24■□□□□ 0.35
USF1-201ENST00000368019 KIDINS220Q9ULH0 1771 aa17.23■□□□□ 0.35
USF1-201ENST00000368019 AGLP35573 1532 aa17.23■□□□□ 0.35
USF1-201ENST00000368019 CEBPAP49715 358 aaPredicted RBP17.23■□□□□ 0.35
USF1-201ENST00000368019 STRCQ7RTU9 1775 aa17.2■□□□□ 0.34
USF1-201ENST00000368019 C3P01024 1663 aa17.2■□□□□ 0.34
USF1-201ENST00000368019 DIEXFQ68CQ4 756 aaKnown RBP17.18■□□□□ 0.34
USF1-201ENST00000368019 MYT1LQ9UL68 1186 aa17.18■□□□□ 0.34
USF1-201ENST00000368019 SAMD9LQ8IVG5 1584 aa17.17■□□□□ 0.34
USF1-201ENST00000368019 GPATCH8Q9UKJ3 1502 aaKnown RBP17.16■□□□□ 0.34
USF1-201ENST00000368019 CERKQ8TCT0 537 aa17.15■□□□□ 0.34
USF1-201ENST00000368019 UHRF1BP1Q6BDS2 1440 aa17.14■□□□□ 0.33
USF1-201ENST00000368019 MYT1Q01538 1121 aa17.14■□□□□ 0.33
USF1-201ENST00000368019 SYCP2Q9BX26 1530 aa17.12■□□□□ 0.33
USF1-201ENST00000368019 KIAA1107Q9UPP5 1409 aa17.11■□□□□ 0.33
USF1-201ENST00000368019 ZNF777Q9ULD5 760 aaPredicted RBP17.1■□□□□ 0.33
USF1-201ENST00000368019 CNTLNQ9NXG0 1405 aa17.1■□□□□ 0.33
USF1-201ENST00000368019 MROH2AA6NES4 1674 aa17.1■□□□□ 0.33
USF1-201ENST00000368019 HNRNPMP52272 730 aaKnown RBP eCLIP17.09■□□□□ 0.33
USF1-201ENST00000368019 NEUROD1Q13562 356 aa17.09■□□□□ 0.33
USF1-201ENST00000368019 DMRT2Q9Y5R5 561 aa17.09■□□□□ 0.33
USF1-201ENST00000368019 SUPT6HQ7KZ85 1726 aaKnown RBP17.08■□□□□ 0.32
USF1-201ENST00000368019 INO80Q9ULG1 1556 aaPredicted RBP17.08■□□□□ 0.32
USF1-201ENST00000368019 VPS8Q8N3P4 1428 aa17.08■□□□□ 0.32
USF1-201ENST00000368019 SPAG9O60271 1321 aaKnown RBP17.08■□□□□ 0.32
USF1-201ENST00000368019 ZNF316A6NFI3 1004 aaPredicted RBP17.08■□□□□ 0.32
USF1-201ENST00000368019 ATP7AQ04656 1500 aa17.07■□□□□ 0.32
USF1-201ENST00000368019 PLEKHH2Q8IVE3 1493 aa17.07■□□□□ 0.32
USF1-201ENST00000368019 ESF1Q9H501 851 aaKnown RBP17.07■□□□□ 0.32
USF1-201ENST00000368019 PLXNC1O60486 1568 aa17.06■□□□□ 0.32
USF1-201ENST00000368019 CFDP1Q9UEE9 299 aaPredicted RBP17.06■□□□□ 0.32
USF1-201ENST00000368019 PTPRTO14522 1441 aa17.05■□□□□ 0.32
USF1-201ENST00000368019 CCNB3Q8WWL7 1395 aa17.05■□□□□ 0.32
USF1-201ENST00000368019 NPATQ14207 1427 aa17.04■□□□□ 0.32
USF1-201ENST00000368019 MTUS2Q5JR59 1369 aa17.03■□□□□ 0.32
USF1-201ENST00000368019 A2MP01023 1474 aa17.03■□□□□ 0.32
USF1-201ENST00000368019 ZMYM3Q14202 1370 aa17.02■□□□□ 0.32
USF1-201ENST00000368019 TIAM1Q13009 1591 aa17.02■□□□□ 0.32
USF1-201ENST00000368019 NCOA1Q15788 1441 aa17.02■□□□□ 0.31
USF1-201ENST00000368019 CLSPNQ9HAW4 1339 aa17.01■□□□□ 0.31
USF1-201ENST00000368019 CLTCQ00610 1675 aaKnown RBP17.01■□□□□ 0.31
USF1-201ENST00000368019 ADGBQ8N7X0 1667 aa17.01■□□□□ 0.31
USF1-201ENST00000368019 MBD5Q9P267 1494 aa17.01■□□□□ 0.31
USF1-201ENST00000368019 EHBP1L1Q8N3D4 1523 aa17.01■□□□□ 0.31
USF1-201ENST00000368019 ZNF644Q9H582 1327 aaPredicted RBP16.99■□□□□ 0.31
USF1-201ENST00000368019 LTBP4Q8N2S1 1624 aa16.99■□□□□ 0.31
USF1-201ENST00000368019 CAMSAP1Q5T5Y3 1602 aa16.97■□□□□ 0.31
USF1-201ENST00000368019 ZNF142P52746 1687 aaPredicted RBP16.97■□□□□ 0.31
USF1-201ENST00000368019 PTPRKQ15262 1439 aa16.96■□□□□ 0.31
USF1-201ENST00000368019 PPP6R1Q9UPN7 881 aa16.96■□□□□ 0.31
USF1-201ENST00000368019 RTEL1-TNFRSF6BF6WH68 1400 aa16.96■□□□□ 0.3
USF1-201ENST00000368019 GTF3C3Q9Y5Q9 886 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms