RNA–Protein interactions for RNA: ENST00000361545.9

CLIP2-202, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

TSL 1 (best) BASIC

Gene CLIP2, Length 5,445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-202ENST00000361545 TIMELESSQ9UNS1 1208 aa24.09■■□□□ 1.45
CLIP2-202ENST00000361545 OS9Q13438 667 aaPredicted RBP24.08■■□□□ 1.44
CLIP2-202ENST00000361545 BECN1Q14457 450 aa24.07■■□□□ 1.44
CLIP2-202ENST00000361545 RGS3P49796 1198 aa24.06■■□□□ 1.44
CLIP2-202ENST00000361545 CASC1Q6TDU7 716 aa24.06■■□□□ 1.44
CLIP2-202ENST00000361545 WASHC2CQ9Y4E1 1318 aa24.06■■□□□ 1.44
CLIP2-202ENST00000361545 CYB5RLQ6IPT4 315 aa24.05■■□□□ 1.44
CLIP2-202ENST00000361545 RAB3GAP2Q9H2M9 1393 aa24.05■■□□□ 1.44
CLIP2-202ENST00000361545 ROCK2O75116 1388 aaKnown RBP24.05■■□□□ 1.44
CLIP2-202ENST00000361545 FANCD2Q9BXW9 1451 aa24.03■■□□□ 1.44
CLIP2-202ENST00000361545 RTF1Q92541 710 aaKnown RBP24■■□□□ 1.43
CLIP2-202ENST00000361545 CSB-PGBD3P0DP91 1061 aa23.99■■□□□ 1.43
CLIP2-202ENST00000361545 TAOK2Q9UL54 1235 aa23.98■■□□□ 1.43
CLIP2-202ENST00000361545 TPRNQ4KMQ1 711 aa23.98■■□□□ 1.43
CLIP2-202ENST00000361545 NCLP19338 710 aaKnown RBP23.98■■□□□ 1.43
CLIP2-202ENST00000361545 DDRGK1Q96HY6 314 aa23.97■■□□□ 1.43
CLIP2-202ENST00000361545 EID1Q9Y6B2 187 aa23.96■■□□□ 1.43
CLIP2-202ENST00000361545 SMARCA4P51532 1647 aa23.95■■□□□ 1.43
CLIP2-202ENST00000361545 CCDC18Q5T9S5 1454 aa23.95■■□□□ 1.42
CLIP2-202ENST00000361545 CHMP4BQ9H444 224 aaKnown RBP23.95■■□□□ 1.42
CLIP2-202ENST00000361545 MS4A1P11836 297 aa23.95■■□□□ 1.42
CLIP2-202ENST00000361545 KTN1Q86UP2 1357 aaKnown RBP23.94■■□□□ 1.42
CLIP2-202ENST00000361545 U2AF1L5P0DN76 240 aaPredicted RBP23.93■■□□□ 1.42
CLIP2-202ENST00000361545 U2AF1Q01081 240 aaKnown RBP eCLIP23.93■■□□□ 1.42
CLIP2-202ENST00000361545 RSPH4AQ5TD94 716 aa23.93■■□□□ 1.42
CLIP2-202ENST00000361545 GOLGA2Q08379 1002 aa23.92■■□□□ 1.42
CLIP2-202ENST00000361545 NUTM2FA1L443 756 aa23.92■■□□□ 1.42
CLIP2-202ENST00000361545 OSCARQ8IYS5 282 aa23.92■■□□□ 1.42
CLIP2-202ENST00000361545 PTPRGP23470 1445 aa23.91■■□□□ 1.42
CLIP2-202ENST00000361545 CDK11BP21127 795 aaKnown RBP23.9■■□□□ 1.42
CLIP2-202ENST00000361545 GOLGA6L22H0YM25 854 aa23.89■■□□□ 1.41
CLIP2-202ENST00000361545 L3MBTL2Q969R5 705 aa23.89■■□□□ 1.41
CLIP2-202ENST00000361545 ZNF330Q9Y3S2 320 aaPredicted RBP23.89■■□□□ 1.41
CLIP2-202ENST00000361545 PPP4R2Q9NY27 417 aa23.89■■□□□ 1.41
CLIP2-202ENST00000361545 CCDC9Q9Y3X0 531 aaKnown RBP23.86■■□□□ 1.41
CLIP2-202ENST00000361545 KCNJ4P48050 445 aa23.86■■□□□ 1.41
CLIP2-202ENST00000361545 B4GALNT3Q6L9W6 998 aa23.86■■□□□ 1.41
CLIP2-202ENST00000361545 FGD1P98174 961 aa23.85■■□□□ 1.41
CLIP2-202ENST00000361545 NGDNQ8NEJ9 315 aaKnown RBP23.85■■□□□ 1.41
CLIP2-202ENST00000361545 GLIPR1L2Q4G1C9 344 aa23.85■■□□□ 1.41
CLIP2-202ENST00000361545 TULP1O00294 542 aaPredicted RBP23.84■■□□□ 1.41
CLIP2-202ENST00000361545 RUSC2Q8N2Y8 1516 aa23.84■■□□□ 1.41
CLIP2-202ENST00000361545 EIF3AQ14152 1382 aaKnown RBP23.83■■□□□ 1.41
CLIP2-202ENST00000361545 TRAK1Q9UPV9 953 aa23.83■■□□□ 1.4
CLIP2-202ENST00000361545 NAP1L2Q9ULW6 460 aaPredicted RBP23.81■■□□□ 1.4
CLIP2-202ENST00000361545 TERF2IPQ9NYB0 399 aa23.81■■□□□ 1.4
CLIP2-202ENST00000361545 ZRSR1Q15695 479 aaKnown RBP23.81■■□□□ 1.4
CLIP2-202ENST00000361545 APBB1O00213 710 aa23.79■■□□□ 1.4
CLIP2-202ENST00000361545 CCER2I3L3R5 266 aa23.78■■□□□ 1.4
CLIP2-202ENST00000361545 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.78■■□□□ 1.4
CLIP2-202ENST00000361545 RALBP1Q15311 655 aa23.75■■□□□ 1.39
CLIP2-202ENST00000361545 LTV1Q96GA3 475 aaPredicted RBP23.75■■□□□ 1.39
CLIP2-202ENST00000361545 RAD54L2Q9Y4B4 1467 aa23.74■■□□□ 1.39
CLIP2-202ENST00000361545 GAPVD1Q14C86 1478 aa23.72■■□□□ 1.39
CLIP2-202ENST00000361545 FGD5Q6ZNL6 1462 aa23.72■■□□□ 1.39
CLIP2-202ENST00000361545 AMPHP49418 695 aa23.71■■□□□ 1.39
CLIP2-202ENST00000361545 CALD1Q05682 793 aaKnown RBP23.7■■□□□ 1.39
CLIP2-202ENST00000361545 IPO8O15397 1037 aaKnown RBP23.7■■□□□ 1.38
CLIP2-202ENST00000361545 HSP90AB1P08238 724 aaKnown RBP23.69■■□□□ 1.38
CLIP2-202ENST00000361545 CCDC144AA2RUR9 1427 aa23.69■■□□□ 1.38
CLIP2-202ENST00000361545 FAM69CQ0P6D2 419 aa23.68■■□□□ 1.38
CLIP2-202ENST00000361545 CCDC146Q8IYE0 955 aa23.67■■□□□ 1.38
CLIP2-202ENST00000361545 ANP32EQ9BTT0 268 aa23.66■■□□□ 1.38
CLIP2-202ENST00000361545 ITPRIPQ8IWB1 547 aa23.66■■□□□ 1.38
CLIP2-202ENST00000361545 TRIM44Q96DX7 344 aaPredicted RBP23.66■■□□□ 1.38
CLIP2-202ENST00000361545 IGF1RP08069 1367 aa23.64■■□□□ 1.38
CLIP2-202ENST00000361545 ST20-MTHFSA0A0A6YYL1 179 aa23.64■■□□□ 1.37
CLIP2-202ENST00000361545 AQRO60306 1485 aaKnown RBP eCLIP23.64■■□□□ 1.373e-7■■■□□ 17
CLIP2-202ENST00000361545 STK31Q9BXU1 1019 aa23.63■■□□□ 1.37
CLIP2-202ENST00000361545 ISY1Q9ULR0 285 aaKnown RBP23.62■■□□□ 1.37
CLIP2-202ENST00000361545 VGFO15240 615 aaPredicted RBP23.62■■□□□ 1.37
CLIP2-202ENST00000361545 RCAN3Q9UKA8 241 aa23.62■■□□□ 1.37
CLIP2-202ENST00000361545 PTMAP06454 111 aaKnown RBP23.61■■□□□ 1.37
CLIP2-202ENST00000361545 CHMP3Q9Y3E7 222 aa23.58■■□□□ 1.37
CLIP2-202ENST00000361545 PLCB2Q00722 1185 aa23.57■■□□□ 1.36
CLIP2-202ENST00000361545 MINK1Q8N4C8 1332 aaPredicted RBP23.57■■□□□ 1.36
CLIP2-202ENST00000361545 SMC4Q9NTJ3 1288 aa23.57■■□□□ 1.36
CLIP2-202ENST00000361545 NLRP13Q86W25 1043 aa23.56■■□□□ 1.36
CLIP2-202ENST00000361545 MCCP23508 829 aa23.55■■□□□ 1.36
CLIP2-202ENST00000361545 PANK3Q9H999 370 aa23.55■■□□□ 1.36
CLIP2-202ENST00000361545 SLC4A10Q6U841 1118 aa23.55■■□□□ 1.36
CLIP2-202ENST00000361545 ZNF644Q9H582 1327 aaPredicted RBP23.54■■□□□ 1.36
CLIP2-202ENST00000361545 SPRYD3Q8NCJ5 442 aa23.54■■□□□ 1.36
CLIP2-202ENST00000361545 CLUAP1Q96AJ1 413 aa23.54■■□□□ 1.36
CLIP2-202ENST00000361545 HSCBQ8IWL3 235 aa23.53■■□□□ 1.36
CLIP2-202ENST00000361545 RRP7AQ9Y3A4 280 aaKnown RBP23.52■■□□□ 1.36
CLIP2-202ENST00000361545 UACAQ9BZF9 1416 aa23.52■■□□□ 1.36
CLIP2-202ENST00000361545 CHMP4AQ9BY43 222 aa23.51■■□□□ 1.35
CLIP2-202ENST00000361545 KIAA1211Q6ZU35 1233 aa23.5■■□□□ 1.35
CLIP2-202ENST00000361545 TAF7LQ5H9L4 462 aa23.5■■□□□ 1.35
CLIP2-202ENST00000361545 GORABQ5T7V8 394 aa23.49■■□□□ 1.35
CLIP2-202ENST00000361545 COG3Q96JB2 828 aa23.49■■□□□ 1.35
CLIP2-202ENST00000361545 RWDD1Q9H446 243 aaPredicted RBP23.49■■□□□ 1.35
CLIP2-202ENST00000361545 NCAPD3P42695 1498 aa23.49■■□□□ 1.35
CLIP2-202ENST00000361545 EVC2Q86UK5 1308 aa23.49■■□□□ 1.35
CLIP2-202ENST00000361545 GOLGA6L4A6NEF3 574 aa23.49■■□□□ 1.35
CLIP2-202ENST00000361545 TMX4Q9H1E5 349 aaPredicted RBP23.48■■□□□ 1.35
CLIP2-202ENST00000361545 LMOD3Q0VAK6 560 aa23.47■■□□□ 1.35
CLIP2-202ENST00000361545 DHX57Q6P158 1386 aaKnown RBP23.45■■□□□ 1.34
CLIP2-202ENST00000361545 EVA1CP58658 441 aa23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms