RNA–Protein interactions for RNA: ENST00000358901.10

VCP-201, Transcript of valosin containing protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VCP, Length 4,370 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-201ENST00000358901 HSP90AB1P08238 724 aaKnown RBP17.62■□□□□ 0.41
VCP-201ENST00000358901 TCERG1O14776 1098 aaKnown RBP17.62■□□□□ 0.41
VCP-201ENST00000358901 SMARCA2P51531 1590 aa17.62■□□□□ 0.41
VCP-201ENST00000358901 ROCK2O75116 1388 aaKnown RBP17.61■□□□□ 0.41
VCP-201ENST00000358901 SPRYD3Q8NCJ5 442 aa17.61■□□□□ 0.41
VCP-201ENST00000358901 NAP1L5Q96NT1 182 aaPredicted RBP17.6■□□□□ 0.41
VCP-201ENST00000358901 SRPK2P78362 688 aaKnown RBP17.58■□□□□ 0.41
VCP-201ENST00000358901 CHMP4BQ9H444 224 aaKnown RBP17.58■□□□□ 0.41
VCP-201ENST00000358901 ERCC6Q03468 1493 aa17.58■□□□□ 0.4
VCP-201ENST00000358901 NLRP13Q86W25 1043 aa17.57■□□□□ 0.4
VCP-201ENST00000358901 ANKRD30AQ9BXX3 1397 aa17.56■□□□□ 0.4
VCP-201ENST00000358901 A0A0G2JS52 829 aa17.56■□□□□ 0.4
VCP-201ENST00000358901 HSCBQ8IWL3 235 aa17.56■□□□□ 0.4
VCP-201ENST00000358901 DNTTIP2Q5QJE6 756 aaKnown RBP17.55■□□□□ 0.4
VCP-201ENST00000358901 IPO9Q96P70 1041 aaKnown RBP17.55■□□□□ 0.4
VCP-201ENST00000358901 PRKRIP1Q9H875 184 aaPredicted RBP17.55■□□□□ 0.4
VCP-201ENST00000358901 ARID4BQ4LE39 1312 aaPredicted RBP17.55■□□□□ 0.4
VCP-201ENST00000358901 KANK1Q14678 1352 aa17.55■□□□□ 0.4
VCP-201ENST00000358901 GGT6Q6P531 493 aa17.54■□□□□ 0.4
VCP-201ENST00000358901 SLKQ9H2G2 1235 aaPredicted RBP17.54■□□□□ 0.4
VCP-201ENST00000358901 PNNQ9H307 717 aaKnown RBP17.53■□□□□ 0.4
VCP-201ENST00000358901 U2AF1L5P0DN76 240 aaPredicted RBP17.53■□□□□ 0.4
VCP-201ENST00000358901 U2AF1Q01081 240 aaKnown RBP eCLIP17.53■□□□□ 0.43e-6■■□□□ 12.5
VCP-201ENST00000358901 ST20-MTHFSA0A0A6YYL1 179 aa17.52■□□□□ 0.39
VCP-201ENST00000358901 PLCB2Q00722 1185 aa17.52■□□□□ 0.39
VCP-201ENST00000358901 STK26Q9P289 416 aa17.51■□□□□ 0.39
VCP-201ENST00000358901 SOX12O15370 315 aa17.51■□□□□ 0.39
VCP-201ENST00000358901 HNRNPMP52272 730 aaKnown RBP eCLIP17.51■□□□□ 0.392e-6■■□□□ 13.4
VCP-201ENST00000358901 CADPSQ9ULU8 1353 aa17.51■□□□□ 0.39
VCP-201ENST00000358901 GOLGA2Q08379 1002 aa17.5■□□□□ 0.39
VCP-201ENST00000358901 CARMIL2Q6F5E8 1435 aa17.49■□□□□ 0.39
VCP-201ENST00000358901 PDE3BQ13370 1112 aa17.49■□□□□ 0.39
VCP-201ENST00000358901 ATAD2BQ9ULI0 1458 aa17.49■□□□□ 0.39
VCP-201ENST00000358901 LMOD2Q6P5Q4 547 aa17.47■□□□□ 0.39
VCP-201ENST00000358901 CCDC146Q8IYE0 955 aa17.47■□□□□ 0.39
VCP-201ENST00000358901 CLUAP1Q96AJ1 413 aa17.47■□□□□ 0.39
VCP-201ENST00000358901 EFCAB2Q5VUJ9 269 aa17.46■□□□□ 0.39
VCP-201ENST00000358901 PDS5BQ9NTI5 1447 aa17.46■□□□□ 0.39
VCP-201ENST00000358901 L1TD1Q5T7N2 865 aaKnown RBP17.46■□□□□ 0.39
VCP-201ENST00000358901 RWDD1Q9H446 243 aaPredicted RBP17.46■□□□□ 0.39
VCP-201ENST00000358901 ZRSR1Q15695 479 aaKnown RBP17.45■□□□□ 0.38
VCP-201ENST00000358901 GZF1Q9H116 711 aaPredicted RBP17.45■□□□□ 0.38
VCP-201ENST00000358901 APBB1O00213 710 aa17.45■□□□□ 0.38
VCP-201ENST00000358901 IPO8O15397 1037 aaKnown RBP17.44■□□□□ 0.38
VCP-201ENST00000358901 OS9Q13438 667 aaPredicted RBP17.44■□□□□ 0.38
VCP-201ENST00000358901 ZBED9Q6R2W3 1325 aa17.43■□□□□ 0.38
VCP-201ENST00000358901 ITPRIPQ8IWB1 547 aa17.43■□□□□ 0.38
VCP-201ENST00000358901 MLECQ14165 292 aa17.42■□□□□ 0.38
VCP-201ENST00000358901 KCNJ4P48050 445 aa17.42■□□□□ 0.38
VCP-201ENST00000358901 PLIN1O60240 522 aa17.42■□□□□ 0.38
VCP-201ENST00000358901 MYBBP1AQ9BQG0 1328 aaKnown RBP17.41■□□□□ 0.38
VCP-201ENST00000358901 KIF3BO15066 747 aa17.41■□□□□ 0.38
VCP-201ENST00000358901 EXOC6Q8TAG9 804 aa17.41■□□□□ 0.38
VCP-201ENST00000358901 SMARCA4P51532 1647 aa17.4■□□□□ 0.38
VCP-201ENST00000358901 KIF15Q9NS87 1388 aa17.4■□□□□ 0.38
VCP-201ENST00000358901 PANK3Q9H999 370 aa17.4■□□□□ 0.38
VCP-201ENST00000358901 CCDC18Q5T9S5 1454 aa17.4■□□□□ 0.38
VCP-201ENST00000358901 FGD1P98174 961 aa17.39■□□□□ 0.37
VCP-201ENST00000358901 HDGFL2Q7Z4V5 671 aaPredicted RBP17.39■□□□□ 0.37
VCP-201ENST00000358901 PDE4AP27815 886 aa17.38■□□□□ 0.37
VCP-201ENST00000358901 SMC4Q9NTJ3 1288 aa17.38■□□□□ 0.37
VCP-201ENST00000358901 MFAP1P55081 439 aaKnown RBP17.38■□□□□ 0.37
VCP-201ENST00000358901 PMFBP1Q8TBY8 1022 aa17.38■□□□□ 0.37
VCP-201ENST00000358901 TAOK2Q9UL54 1235 aa17.38■□□□□ 0.37
VCP-201ENST00000358901 CENPJQ9HC77 1338 aaPredicted RBP17.37■□□□□ 0.37
VCP-201ENST00000358901 HAP1P54257 671 aaPredicted RBP17.37■□□□□ 0.37
VCP-201ENST00000358901 JPH4Q96JJ6 628 aa17.36■□□□□ 0.37
VCP-201ENST00000358901 USP47Q96K76 1375 aa17.36■□□□□ 0.37
VCP-201ENST00000358901 RRP1P56182 461 aaKnown RBP17.35■□□□□ 0.37
VCP-201ENST00000358901 IGF1RP08069 1367 aa17.35■□□□□ 0.37
VCP-201ENST00000358901 RSPH4AQ5TD94 716 aa17.35■□□□□ 0.37
VCP-201ENST00000358901 SLC4A3P48751 1232 aa17.34■□□□□ 0.37
VCP-201ENST00000358901 PHLDB1Q86UU1 1377 aa17.34■□□□□ 0.37
VCP-201ENST00000358901 MSNP26038 577 aaKnown RBP17.34■□□□□ 0.37
VCP-201ENST00000358901 GBP4Q96PP9 640 aa17.34■□□□□ 0.37
VCP-201ENST00000358901 RRP7AQ9Y3A4 280 aaKnown RBP17.33■□□□□ 0.37
VCP-201ENST00000358901 RTF1Q92541 710 aaKnown RBP17.33■□□□□ 0.37
VCP-201ENST00000358901 MCCP23508 829 aa17.33■□□□□ 0.36
VCP-201ENST00000358901 GOLGA6L4A6NEF3 574 aa17.33■□□□□ 0.36
VCP-201ENST00000358901 FANCIQ9NVI1 1328 aa17.32■□□□□ 0.36
VCP-201ENST00000358901 NAP1L2Q9ULW6 460 aaPredicted RBP17.32■□□□□ 0.36
VCP-201ENST00000358901 EIF3AQ14152 1382 aaKnown RBP17.31■□□□□ 0.36
VCP-201ENST00000358901 SPAG9O60271 1321 aaKnown RBP17.31■□□□□ 0.36
VCP-201ENST00000358901 CRBNQ96SW2 442 aa17.31■□□□□ 0.36
VCP-201ENST00000358901 BCL2L13Q9BXK5 485 aa17.31■□□□□ 0.36
VCP-201ENST00000358901 NUTM2DQ5VT03 806 aaPredicted RBP17.31■□□□□ 0.36
VCP-201ENST00000358901 CFAP44Q96MT7 982 aa17.31■□□□□ 0.36
VCP-201ENST00000358901 TRAK1Q9UPV9 953 aa17.31■□□□□ 0.36
VCP-201ENST00000358901 CALD1Q05682 793 aaKnown RBP17.3■□□□□ 0.36
VCP-201ENST00000358901 CCDC144AA2RUR9 1427 aa17.3■□□□□ 0.36
VCP-201ENST00000358901 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.3■□□□□ 0.36
VCP-201ENST00000358901 CENPQQ7L2Z9 268 aaPredicted RBP17.29■□□□□ 0.36
VCP-201ENST00000358901 HDGFP51858 240 aaKnown RBP17.29■□□□□ 0.36
VCP-201ENST00000358901 KIF21BO75037 1637 aa17.29■□□□□ 0.36
VCP-201ENST00000358901 KIF7Q2M1P5 1343 aa17.28■□□□□ 0.36
VCP-201ENST00000358901 FAM161AQ3B820 660 aa17.27■□□□□ 0.36
VCP-201ENST00000358901 APAF1O14727 1248 aa17.27■□□□□ 0.35
VCP-201ENST00000358901 TERF2IPQ9NYB0 399 aa17.26■□□□□ 0.35
VCP-201ENST00000358901 CCDC7Q96M83 1385 aa17.26■□□□□ 0.35
VCP-201ENST00000358901 ZNF644Q9H582 1327 aaPredicted RBP17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms