RNA–Protein interactions for RNA: ENST00000357517.6

PCDH1-202, Transcript of protocadherin 1, humanhuman

TSL 2

Gene PCDH1, Length 3,307 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-202ENST00000357517 MS4A1P11836 297 aa13.63□□□□□ -0.23
PCDH1-202ENST00000357517 BBXQ8WY36 941 aaPredicted RBP13.63□□□□□ -0.23
PCDH1-202ENST00000357517 RRBP1Q9P2E9 1410 aaKnown RBP13.62□□□□□ -0.23
PCDH1-202ENST00000357517 TMC1Q8TDI8 760 aa13.62□□□□□ -0.23
PCDH1-202ENST00000357517 CHMP4BQ9H444 224 aaKnown RBP13.62□□□□□ -0.23
PCDH1-202ENST00000357517 RCAN3Q9UKA8 241 aa13.62□□□□□ -0.23
PCDH1-202ENST00000357517 SMG6Q86US8 1419 aaKnown RBP13.61□□□□□ -0.23
PCDH1-202ENST00000357517 TAF7LQ5H9L4 462 aa13.61□□□□□ -0.23
PCDH1-202ENST00000357517 PRDM4Q9UKN5 801 aa13.61□□□□□ -0.23
PCDH1-202ENST00000357517 TRIM44Q96DX7 344 aaPredicted RBP13.6□□□□□ -0.23
PCDH1-202ENST00000357517 PDCL3Q9H2J4 239 aa13.59□□□□□ -0.23
PCDH1-202ENST00000357517 CRBNQ96SW2 442 aa13.58□□□□□ -0.24
PCDH1-202ENST00000357517 NAP1L2Q9ULW6 460 aaPredicted RBP13.57□□□□□ -0.24
PCDH1-202ENST00000357517 ZBTB7CA1YPR0 619 aa13.57□□□□□ -0.24
PCDH1-202ENST00000357517 ESPNB1AK53 854 aa13.56□□□□□ -0.24
PCDH1-202ENST00000357517 KIAA1211Q6ZU35 1233 aa13.56□□□□□ -0.24
PCDH1-202ENST00000357517 P3H3Q8IVL6 736 aa13.56□□□□□ -0.24
PCDH1-202ENST00000357517 MYH16Q9H6N6 1097 aa13.56□□□□□ -0.24
PCDH1-202ENST00000357517 RNF123Q5XPI4 1314 aa13.55□□□□□ -0.24
PCDH1-202ENST00000357517 SYNJ1O43426 1573 aa13.55□□□□□ -0.24
PCDH1-202ENST00000357517 ZNF326Q5BKZ1 582 aaKnown RBP13.55□□□□□ -0.24
PCDH1-202ENST00000357517 ERBB4Q15303 1308 aa13.55□□□□□ -0.24
PCDH1-202ENST00000357517 CDCA7LQ96GN5 454 aa13.54□□□□□ -0.24
PCDH1-202ENST00000357517 CALD1Q05682 793 aaKnown RBP13.54□□□□□ -0.24
PCDH1-202ENST00000357517 MAPK8IP2Q13387 824 aaPredicted RBP13.54□□□□□ -0.24
PCDH1-202ENST00000357517 CNTLNQ9NXG0 1405 aa13.54□□□□□ -0.24
PCDH1-202ENST00000357517 FAM161AQ3B820 660 aa13.52□□□□□ -0.24
PCDH1-202ENST00000357517 PLCD3Q8N3E9 789 aa13.52□□□□□ -0.24
PCDH1-202ENST00000357517 NCAPD3P42695 1498 aa13.52□□□□□ -0.25
PCDH1-202ENST00000357517 FOXD1Q16676 465 aa13.52□□□□□ -0.25
PCDH1-202ENST00000357517 CUX2O14529 1486 aa13.51□□□□□ -0.25
PCDH1-202ENST00000357517 C20orf194Q5TEA3 1177 aa13.51□□□□□ -0.25
PCDH1-202ENST00000357517 VGLL3A8MV65 326 aa13.5□□□□□ -0.25
PCDH1-202ENST00000357517 C8orf34Q49A92 452 aa13.49□□□□□ -0.25
PCDH1-202ENST00000357517 ARAP1Q96P48 1450 aa13.48□□□□□ -0.25
PCDH1-202ENST00000357517 CANXP27824 592 aaKnown RBP13.47□□□□□ -0.25
PCDH1-202ENST00000357517 CCDC7Q96M83 1385 aa13.47□□□□□ -0.25
PCDH1-202ENST00000357517 R3HCC1Q9Y3T6 440 aaKnown RBP13.47□□□□□ -0.25
PCDH1-202ENST00000357517 KIF7Q2M1P5 1343 aa13.46□□□□□ -0.25
PCDH1-202ENST00000357517 TPM2P07951 284 aa13.46□□□□□ -0.25
PCDH1-202ENST00000357517 CHIC2Q9UKJ5 165 aa13.46□□□□□ -0.25
PCDH1-202ENST00000357517 PHLDB1Q86UU1 1377 aa13.46□□□□□ -0.25
PCDH1-202ENST00000357517 PEG3Q9GZU2 1588 aa13.46□□□□□ -0.26
PCDH1-202ENST00000357517 UNC13AQ9UPW8 1703 aa13.45□□□□□ -0.26
PCDH1-202ENST00000357517 BECN1Q14457 450 aa13.45□□□□□ -0.26
PCDH1-202ENST00000357517 L3MBTL2Q969R5 705 aa13.44□□□□□ -0.26
PCDH1-202ENST00000357517 SEC24BO95487 1268 aa13.44□□□□□ -0.26
PCDH1-202ENST00000357517 PNISRQ8TF01 805 aaKnown RBP13.44□□□□□ -0.26
PCDH1-202ENST00000357517 GTF2E1P29083 439 aaPredicted RBP13.43□□□□□ -0.26
PCDH1-202ENST00000357517 GRPEL1Q9HAV7 217 aa13.43□□□□□ -0.26
PCDH1-202ENST00000357517 RRP7BPQ9NSQ0 103 aa13.43□□□□□ -0.26
PCDH1-202ENST00000357517 FHAD1B1AJZ9 1412 aa13.43□□□□□ -0.26
PCDH1-202ENST00000357517 TRAK2O60296 914 aa13.42□□□□□ -0.26
PCDH1-202ENST00000357517 MRE11P49959 708 aa13.41□□□□□ -0.26
PCDH1-202ENST00000357517 ANP32BQ92688 251 aaKnown RBP13.41□□□□□ -0.26
PCDH1-202ENST00000357517 DHX37Q8IY37 1157 aaKnown RBP13.4□□□□□ -0.26
PCDH1-202ENST00000357517 RIPK4P57078 832 aa13.39□□□□□ -0.27
PCDH1-202ENST00000357517 MSNP26038 577 aaKnown RBP13.38□□□□□ -0.27
PCDH1-202ENST00000357517 MCM4P33991 863 aa13.38□□□□□ -0.27
PCDH1-202ENST00000357517 STAC3Q96MF2 364 aa13.38□□□□□ -0.27
PCDH1-202ENST00000357517 KTN1Q86UP2 1357 aaKnown RBP13.38□□□□□ -0.27
PCDH1-202ENST00000357517 IGSF3O75054 1194 aa13.37□□□□□ -0.27
PCDH1-202ENST00000357517 FSD2A1L4K1 749 aa13.36□□□□□ -0.27
PCDH1-202ENST00000357517 NBPF8Q3BBV2 869 aa13.36□□□□□ -0.27
PCDH1-202ENST00000357517 CENPQQ7L2Z9 268 aaPredicted RBP13.35□□□□□ -0.27
PCDH1-202ENST00000357517 UQCRHLA0A096LP55 91 aa13.35□□□□□ -0.27
PCDH1-202ENST00000357517 UQCRHP07919 91 aa13.35□□□□□ -0.27
PCDH1-202ENST00000357517 ZBTB22O15209 634 aa13.34□□□□□ -0.27
PCDH1-202ENST00000357517 XPCQ01831 940 aaPredicted RBP13.34□□□□□ -0.27
PCDH1-202ENST00000357517 CENPJQ9HC77 1338 aaPredicted RBP13.34□□□□□ -0.27
PCDH1-202ENST00000357517 TNNT2P45379 298 aaPredicted RBP13.34□□□□□ -0.27
PCDH1-202ENST00000357517 CBX1P83916 185 aa13.33□□□□□ -0.28
PCDH1-202ENST00000357517 GAS2L3Q86XJ1 694 aa13.33□□□□□ -0.28
PCDH1-202ENST00000357517 ATAD2BQ9ULI0 1458 aa13.32□□□□□ -0.28
PCDH1-202ENST00000357517 TBC1D2Q9BYX2 928 aa13.32□□□□□ -0.28
PCDH1-202ENST00000357517 IPO4Q8TEX9 1081 aaKnown RBP13.31□□□□□ -0.28
PCDH1-202ENST00000357517 FOXD4L1Q9NU39 408 aa13.31□□□□□ -0.28
PCDH1-202ENST00000357517 JARID2Q92833 1246 aaPredicted RBP13.31□□□□□ -0.28
PCDH1-202ENST00000357517 UPF2Q9HAU5 1272 aaKnown RBP13.31□□□□□ -0.28
PCDH1-202ENST00000357517 E9PSI1 815 aa13.3□□□□□ -0.28
PCDH1-202ENST00000357517 PPP4R3BQ5MIZ7 849 aa13.3□□□□□ -0.28
PCDH1-202ENST00000357517 SMAP1Q8IYB5 467 aaPredicted RBP13.3□□□□□ -0.28
PCDH1-202ENST00000357517 CHMP4AQ9BY43 222 aa13.3□□□□□ -0.28
PCDH1-202ENST00000357517 TSC1Q92574 1164 aa13.29□□□□□ -0.28
PCDH1-202ENST00000357517 NCOA1Q15788 1441 aa13.29□□□□□ -0.28
PCDH1-202ENST00000357517 CDK11BP21127 795 aaKnown RBP13.29□□□□□ -0.28
PCDH1-202ENST00000357517 BICRAQ9NZM4 1560 aa13.29□□□□□ -0.28
PCDH1-202ENST00000357517 CCDC18Q5T9S5 1454 aa13.29□□□□□ -0.28
PCDH1-202ENST00000357517 NCOA2Q15596 1464 aa13.28□□□□□ -0.28
PCDH1-202ENST00000357517 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.28□□□□□ -0.28
PCDH1-202ENST00000357517 ANTXR1Q9H6X2 564 aa13.28□□□□□ -0.28
PCDH1-202ENST00000357517 USP19O94966 1318 aa13.28□□□□□ -0.28
PCDH1-202ENST00000357517 FAM177BA6PVY3 158 aa13.28□□□□□ -0.28
PCDH1-202ENST00000357517 AQRO60306 1485 aaKnown RBP eCLIP13.28□□□□□ -0.28
PCDH1-202ENST00000357517 PRXQ9BXM0 1461 aa13.27□□□□□ -0.28
PCDH1-202ENST00000357517 KDM2BQ8NHM5 1336 aa13.27□□□□□ -0.29
PCDH1-202ENST00000357517 TOP2BQ02880 1626 aa13.27□□□□□ -0.29
PCDH1-202ENST00000357517 NCLP19338 710 aaKnown RBP13.27□□□□□ -0.29
PCDH1-202ENST00000357517 ZNF830Q96NB3 372 aaPredicted RBP13.27□□□□□ -0.29
PCDH1-202ENST00000357517 OFD1O75665 1012 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms