RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 RALBP1Q15311 655 aa18.83■□□□□ 0.61
CHD4-201ENST00000357008 NAP1L2Q9ULW6 460 aaPredicted RBP18.83■□□□□ 0.61
CHD4-201ENST00000357008 DRC7Q8IY82 874 aa18.83■□□□□ 0.6
CHD4-201ENST00000357008 RWDD1Q9H446 243 aaPredicted RBP18.82■□□□□ 0.6
CHD4-201ENST00000357008 TAOK2Q9UL54 1235 aa18.81■□□□□ 0.6
CHD4-201ENST00000357008 SLKQ9H2G2 1235 aaPredicted RBP18.8■□□□□ 0.6
CHD4-201ENST00000357008 SOGA1O94964 1423 aa18.8■□□□□ 0.6
CHD4-201ENST00000357008 KIAA2012Q0VF49 1180 aa18.8■□□□□ 0.6
CHD4-201ENST00000357008 ARHGAP35Q9NRY4 1499 aa18.79■□□□□ 0.6
CHD4-201ENST00000357008 GZF1Q9H116 711 aaPredicted RBP18.78■□□□□ 0.6
CHD4-201ENST00000357008 CARMIL1Q5VZK9 1371 aa18.78■□□□□ 0.6
CHD4-201ENST00000357008 KANK1Q14678 1352 aa18.77■□□□□ 0.59
CHD4-201ENST00000357008 ARID4BQ4LE39 1312 aaPredicted RBP18.77■□□□□ 0.59
CHD4-201ENST00000357008 GOLGA6L3A6NEY3 463 aa18.76■□□□□ 0.59
CHD4-201ENST00000357008 RAB3GAP2Q9H2M9 1393 aa18.76■□□□□ 0.59
CHD4-201ENST00000357008 PMFBP1Q8TBY8 1022 aa18.75■□□□□ 0.59
CHD4-201ENST00000357008 PKD2Q13563 968 aa18.75■□□□□ 0.59
CHD4-201ENST00000357008 SRPK2P78362 688 aaKnown RBP18.74■□□□□ 0.59
CHD4-201ENST00000357008 KANK4Q5T7N3 995 aaPredicted RBP18.73■□□□□ 0.59
CHD4-201ENST00000357008 SYAP1Q96A49 352 aaPredicted RBP18.73■□□□□ 0.59
CHD4-201ENST00000357008 BAZ1AQ9NRL2 1556 aaPredicted RBP18.73■□□□□ 0.59
CHD4-201ENST00000357008 KIAA1211Q6ZU35 1233 aa18.73■□□□□ 0.59
CHD4-201ENST00000357008 TULP1O00294 542 aaPredicted RBP18.72■□□□□ 0.59
CHD4-201ENST00000357008 LMOD2Q6P5Q4 547 aa18.71■□□□□ 0.59
CHD4-201ENST00000357008 CALD1Q05682 793 aaKnown RBP18.71■□□□□ 0.59
CHD4-201ENST00000357008 NACADO15069 1562 aa18.71■□□□□ 0.59
CHD4-201ENST00000357008 PDE3BQ13370 1112 aa18.71■□□□□ 0.59
CHD4-201ENST00000357008 ITPRIPQ8IWB1 547 aa18.71■□□□□ 0.59
CHD4-201ENST00000357008 MPHOSPH9Q99550 1183 aa18.69■□□□□ 0.58
CHD4-201ENST00000357008 USP35Q9P2H5 1018 aa18.69■□□□□ 0.58
CHD4-201ENST00000357008 RTF1Q92541 710 aaKnown RBP18.69■□□□□ 0.58
CHD4-201ENST00000357008 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.68■□□□□ 0.58
CHD4-201ENST00000357008 CUX2O14529 1486 aa18.68■□□□□ 0.58
CHD4-201ENST00000357008 FOXD1Q16676 465 aa18.68■□□□□ 0.58
CHD4-201ENST00000357008 ROCK2O75116 1388 aaKnown RBP18.68■□□□□ 0.58
CHD4-201ENST00000357008 APBB1O00213 710 aa18.68■□□□□ 0.58
CHD4-201ENST00000357008 GOLGA2Q08379 1002 aa18.68■□□□□ 0.58
CHD4-201ENST00000357008 U2AF1L5P0DN76 240 aaPredicted RBP18.68■□□□□ 0.58
CHD4-201ENST00000357008 U2AF1Q01081 240 aaKnown RBP eCLIP18.68■□□□□ 0.58
CHD4-201ENST00000357008 HTATSF1O43719 755 aaKnown RBP18.67■□□□□ 0.58
CHD4-201ENST00000357008 MFAP1P55081 439 aaKnown RBP18.67■□□□□ 0.58
CHD4-201ENST00000357008 HDGFL2Q7Z4V5 671 aaPredicted RBP18.65■□□□□ 0.58
CHD4-201ENST00000357008 NLRP13Q86W25 1043 aa18.64■□□□□ 0.57
CHD4-201ENST00000357008 HDGFP51858 240 aaKnown RBP18.63■□□□□ 0.57
CHD4-201ENST00000357008 GNL2Q13823 731 aaKnown RBP18.63■□□□□ 0.57
CHD4-201ENST00000357008 EIF4G1Q04637 1599 aaKnown RBP18.62■□□□□ 0.57
CHD4-201ENST00000357008 SAFB2Q14151 953 aaKnown RBP eCLIP18.61■□□□□ 0.57
CHD4-201ENST00000357008 FMN1Q68DA7 1419 aa18.61■□□□□ 0.57
CHD4-201ENST00000357008 SOX12O15370 315 aa18.6■□□□□ 0.57
CHD4-201ENST00000357008 NPHP1O15259 732 aa18.6■□□□□ 0.57
CHD4-201ENST00000357008 SMC4Q9NTJ3 1288 aa18.6■□□□□ 0.57
CHD4-201ENST00000357008 ARID3AQ99856 593 aa18.59■□□□□ 0.57
CHD4-201ENST00000357008 CECR2Q9BXF3 1484 aa18.59■□□□□ 0.57
CHD4-201ENST00000357008 NUP155O75694 1391 aa18.58■□□□□ 0.57
CHD4-201ENST00000357008 L3MBTL2Q969R5 705 aa18.58■□□□□ 0.56
CHD4-201ENST00000357008 AMER1Q5JTC6 1135 aaPredicted RBP18.58■□□□□ 0.56
CHD4-201ENST00000357008 CENPJQ9HC77 1338 aaPredicted RBP18.58■□□□□ 0.56
CHD4-201ENST00000357008 PHLDB1Q86UU1 1377 aa18.57■□□□□ 0.56
CHD4-201ENST00000357008 CSPP1Q1MSJ5 1256 aa18.57■□□□□ 0.56
CHD4-201ENST00000357008 TPM4P67936 248 aa18.56■□□□□ 0.56
CHD4-201ENST00000357008 HMMRO75330 724 aa18.56■□□□□ 0.56
CHD4-201ENST00000357008 CHMP4AQ9BY43 222 aa18.56■□□□□ 0.56
CHD4-201ENST00000357008 DDX11L8A8MPP1 907 aa18.55■□□□□ 0.56
CHD4-201ENST00000357008 EIF3AQ14152 1382 aaKnown RBP18.55■□□□□ 0.56
CHD4-201ENST00000357008 RSPH6AQ9H0K4 717 aa18.55■□□□□ 0.56
CHD4-201ENST00000357008 ANKRD30AQ9BXX3 1397 aa18.55■□□□□ 0.56
CHD4-201ENST00000357008 PDE4AP27815 886 aa18.54■□□□□ 0.56
CHD4-201ENST00000357008 CENPQQ7L2Z9 268 aaPredicted RBP18.54■□□□□ 0.56
CHD4-201ENST00000357008 CLUAP1Q96AJ1 413 aa18.54■□□□□ 0.56
CHD4-201ENST00000357008 STK26Q9P289 416 aa18.54■□□□□ 0.56
CHD4-201ENST00000357008 PHF14O94880 888 aa18.53■□□□□ 0.56
CHD4-201ENST00000357008 GSE1Q14687 1217 aa18.53■□□□□ 0.56
CHD4-201ENST00000357008 FAM161AQ3B820 660 aa18.52■□□□□ 0.56
CHD4-201ENST00000357008 STK31Q9BXU1 1019 aa18.52■□□□□ 0.56
CHD4-201ENST00000357008 HSP90AA2PQ14568 343 aaPredicted RBP18.52■□□□□ 0.55
CHD4-201ENST00000357008 FANCIQ9NVI1 1328 aa18.51■□□□□ 0.55
CHD4-201ENST00000357008 ST18O60284 1047 aa18.51■□□□□ 0.55
CHD4-201ENST00000357008 TNNT3P45378 269 aaPredicted RBP18.51■□□□□ 0.55
CHD4-201ENST00000357008 KIF15Q9NS87 1388 aa18.51■□□□□ 0.55
CHD4-201ENST00000357008 CCDC88BA6NC98 1476 aa18.5■□□□□ 0.55
CHD4-201ENST00000357008 TRIM6-TRIM34B2RNG4 842 aa18.5■□□□□ 0.55
CHD4-201ENST00000357008 HDAC5Q9UQL6 1122 aa18.5■□□□□ 0.55
CHD4-201ENST00000357008 MYBBP1AQ9BQG0 1328 aaKnown RBP18.5■□□□□ 0.55
CHD4-201ENST00000357008 CCDC146Q8IYE0 955 aa18.5■□□□□ 0.55
CHD4-201ENST00000357008 GPATCH3Q96I76 525 aa18.5■□□□□ 0.55
CHD4-201ENST00000357008 CCDC34Q96HJ3 373 aa18.49■□□□□ 0.55
CHD4-201ENST00000357008 FOXD4L1Q9NU39 408 aa18.49■□□□□ 0.55
CHD4-201ENST00000357008 ABCC8Q09428 1581 aa18.49■□□□□ 0.55
CHD4-201ENST00000357008 SPAG9O60271 1321 aaKnown RBP18.48■□□□□ 0.55
CHD4-201ENST00000357008 GGT6Q6P531 493 aa18.48■□□□□ 0.55
CHD4-201ENST00000357008 ZBED9Q6R2W3 1325 aa18.47■□□□□ 0.55
CHD4-201ENST00000357008 SKOR2Q2VWA4 1001 aaPredicted RBP18.47■□□□□ 0.55
CHD4-201ENST00000357008 DHX57Q6P158 1386 aaKnown RBP18.46■□□□□ 0.55
CHD4-201ENST00000357008 TERF2IPQ9NYB0 399 aa18.45■□□□□ 0.54
CHD4-201ENST00000357008 RRP1P56182 461 aaKnown RBP18.45■□□□□ 0.54
CHD4-201ENST00000357008 LMOD3Q0VAK6 560 aa18.44■□□□□ 0.54
CHD4-201ENST00000357008 GOLGA6L1Q8N7Z2 621 aa18.44■□□□□ 0.54
CHD4-201ENST00000357008 PRKRIP1Q9H875 184 aaPredicted RBP18.44■□□□□ 0.54
CHD4-201ENST00000357008 HSP90B1P14625 803 aaKnown RBP18.43■□□□□ 0.54
CHD4-201ENST00000357008 CARMIL2Q6F5E8 1435 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms