RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 WDR7Q9Y4E6 1490 aa14.91□□□□□ -0.02
SYNE1-203ENST00000354674 TTC37Q6PGP7 1564 aa14.89□□□□□ -0.03
SYNE1-203ENST00000354674 PREX2Q70Z35 1606 aa14.88□□□□□ -0.03
SYNE1-203ENST00000354674 ASXL2Q76L83 1435 aa14.88□□□□□ -0.03
SYNE1-203ENST00000354674 FAM50AQ14320 339 aaKnown RBP14.87□□□□□ -0.03
SYNE1-203ENST00000354674 CDC42BPBQ9Y5S2 1711 aa14.86□□□□□ -0.03
SYNE1-203ENST00000354674 CCER1Q8TC90 406 aaPredicted RBP14.86□□□□□ -0.03
SYNE1-203ENST00000354674 MYO5CQ9NQX4 1742 aa14.85□□□□□ -0.03
SYNE1-203ENST00000354674 MAPKBP1O60336 1514 aa14.85□□□□□ -0.03
SYNE1-203ENST00000354674 ABCA9Q8IUA7 1624 aa14.84□□□□□ -0.03
SYNE1-203ENST00000354674 CAMSAP2Q08AD1 1489 aa14.84□□□□□ -0.03
SYNE1-203ENST00000354674 PTPRKQ15262 1439 aa14.84□□□□□ -0.03
SYNE1-203ENST00000354674 NPM1P06748 294 aaKnown RBP eCLIP14.83□□□□□ -0.03
SYNE1-203ENST00000354674 CYB5RLQ6IPT4 315 aa14.83□□□□□ -0.03
SYNE1-203ENST00000354674 CFDP1Q9UEE9 299 aaPredicted RBP14.83□□□□□ -0.03
SYNE1-203ENST00000354674 ARAP3Q8WWN8 1544 aa14.83□□□□□ -0.03
SYNE1-203ENST00000354674 DNMT1P26358 1616 aaKnown RBP14.83□□□□□ -0.04
SYNE1-203ENST00000354674 PLCH2O75038 1416 aa14.82□□□□□ -0.04
SYNE1-203ENST00000354674 ZNF644Q9H582 1327 aaPredicted RBP14.81□□□□□ -0.04
SYNE1-203ENST00000354674 KCNH8Q96L42 1107 aa14.8□□□□□ -0.04
SYNE1-203ENST00000354674 SAMD9LQ8IVG5 1584 aa14.8□□□□□ -0.04
SYNE1-203ENST00000354674 DAPK1P53355 1430 aa14.8□□□□□ -0.04
SYNE1-203ENST00000354674 ABCC5O15440 1437 aa14.79□□□□□ -0.04
SYNE1-203ENST00000354674 CROCC2H7BZ55 1655 aa14.78□□□□□ -0.04
SYNE1-203ENST00000354674 ARHGEF5Q12774 1597 aa14.78□□□□□ -0.04
SYNE1-203ENST00000354674 AKNAQ7Z591 1439 aa14.78□□□□□ -0.04
SYNE1-203ENST00000354674 ITGAEP38570 1179 aa14.78□□□□□ -0.04
SYNE1-203ENST00000354674 ARHGAP5Q13017 1502 aa14.77□□□□□ -0.04
SYNE1-203ENST00000354674 MBD5Q9P267 1494 aa14.77□□□□□ -0.04
SYNE1-203ENST00000354674 HFM1A2PYH4 1435 aa14.76□□□□□ -0.05
SYNE1-203ENST00000354674 SETD5Q9C0A6 1442 aa14.76□□□□□ -0.05
SYNE1-203ENST00000354674 KIAA1107Q9UPP5 1409 aa14.76□□□□□ -0.05
SYNE1-203ENST00000354674 ROCK1Q13464 1354 aa14.75□□□□□ -0.05
SYNE1-203ENST00000354674 GLI2P10070 1586 aa14.75□□□□□ -0.05
SYNE1-203ENST00000354674 PLEKHH2Q8IVE3 1493 aa14.75□□□□□ -0.05
SYNE1-203ENST00000354674 SHANK2Q9UPX8 1470 aa14.75□□□□□ -0.05
SYNE1-203ENST00000354674 GCC2Q8IWJ2 1684 aa14.73□□□□□ -0.05
SYNE1-203ENST00000354674 ADGRL2O95490 1459 aa14.73□□□□□ -0.05
SYNE1-203ENST00000354674 NAIPQ13075 1403 aa14.73□□□□□ -0.05
SYNE1-203ENST00000354674 ZNF777Q9ULD5 760 aaPredicted RBP14.73□□□□□ -0.05
SYNE1-203ENST00000354674 RAB3GAP2Q9H2M9 1393 aa14.72□□□□□ -0.05
SYNE1-203ENST00000354674 ABCC1P33527 1531 aa14.72□□□□□ -0.05
SYNE1-203ENST00000354674 ADGBQ8N7X0 1667 aa14.72□□□□□ -0.05
SYNE1-203ENST00000354674 EFCAB2Q5VUJ9 269 aa14.71□□□□□ -0.05
SYNE1-203ENST00000354674 RSPH4AQ5TD94 716 aa14.71□□□□□ -0.05
SYNE1-203ENST00000354674 SYCP2Q9BX26 1530 aa14.71□□□□□ -0.05
SYNE1-203ENST00000354674 ARHGEF12Q9NZN5 1544 aa14.71□□□□□ -0.06
SYNE1-203ENST00000354674 MAP3K4Q9Y6R4 1608 aa14.7□□□□□ -0.06
SYNE1-203ENST00000354674 CCDC141Q6ZP82 1450 aa14.7□□□□□ -0.06
SYNE1-203ENST00000354674 MAST1Q9Y2H9 1570 aa14.7□□□□□ -0.06
SYNE1-203ENST00000354674 DIP2BQ9P265 1576 aa14.69□□□□□ -0.06
SYNE1-203ENST00000354674 FANCAO15360 1455 aa14.69□□□□□ -0.06
SYNE1-203ENST00000354674 TSHZ2Q9NRE2 1034 aa14.69□□□□□ -0.06
SYNE1-203ENST00000354674 CD109Q6YHK3 1445 aa14.68□□□□□ -0.06
SYNE1-203ENST00000354674 NCOA1Q15788 1441 aa14.68□□□□□ -0.06
SYNE1-203ENST00000354674 CFAP74Q9C0B2 1584 aa14.68□□□□□ -0.06
SYNE1-203ENST00000354674 HNRNPMP52272 730 aaKnown RBP eCLIP14.67□□□□□ -0.06
SYNE1-203ENST00000354674 MIER1Q8N108 512 aa14.67□□□□□ -0.06
SYNE1-203ENST00000354674 BCANQ96GW7 911 aa14.67□□□□□ -0.06
SYNE1-203ENST00000354674 C9orf84Q5VXU9 1444 aa14.67□□□□□ -0.06
SYNE1-203ENST00000354674 ANO8Q9HCE9 1232 aaPredicted RBP14.67□□□□□ -0.06
SYNE1-203ENST00000354674 CHIC2Q9UKJ5 165 aa14.66□□□□□ -0.06
SYNE1-203ENST00000354674 DHX57Q6P158 1386 aaKnown RBP14.65□□□□□ -0.06
SYNE1-203ENST00000354674 KDM6BO15054 1643 aa14.64□□□□□ -0.07
SYNE1-203ENST00000354674 ANKRD30AQ9BXX3 1397 aa14.63□□□□□ -0.07
SYNE1-203ENST00000354674 RRP7BPQ9NSQ0 103 aa14.63□□□□□ -0.07
SYNE1-203ENST00000354674 NEO1Q92859 1461 aa14.63□□□□□ -0.07
SYNE1-203ENST00000354674 TRAPPC8Q9Y2L5 1435 aa14.63□□□□□ -0.07
SYNE1-203ENST00000354674 PLXNC1O60486 1568 aa14.63□□□□□ -0.07
SYNE1-203ENST00000354674 TSPY4P0CV99 314 aa14.62□□□□□ -0.07
SYNE1-203ENST00000354674 TSPY10P0CW01 314 aa14.62□□□□□ -0.07
SYNE1-203ENST00000354674 ADGRL1O94910 1474 aa14.62□□□□□ -0.07
SYNE1-203ENST00000354674 ERICH6Q7L0X2 663 aa14.61□□□□□ -0.07
SYNE1-203ENST00000354674 DNAJC5Q9H3Z4 198 aa14.61□□□□□ -0.07
SYNE1-203ENST00000354674 KIF13AQ9H1H9 1805 aa14.6□□□□□ -0.07
SYNE1-203ENST00000354674 RTEL1-TNFRSF6BF6WH68 1400 aa14.6□□□□□ -0.07
SYNE1-203ENST00000354674 PPRC1Q5VV67 1664 aaKnown RBP14.6□□□□□ -0.07
SYNE1-203ENST00000354674 CLSPNQ9HAW4 1339 aa14.6□□□□□ -0.07
SYNE1-203ENST00000354674 SCAPERQ9BY12 1400 aa14.59□□□□□ -0.07
SYNE1-203ENST00000354674 SUPT16HQ9Y5B9 1047 aaKnown RBP14.58□□□□□ -0.08
SYNE1-203ENST00000354674 INO80Q9ULG1 1556 aaPredicted RBP14.58□□□□□ -0.08
SYNE1-203ENST00000354674 FAM69CQ0P6D2 419 aa14.58□□□□□ -0.08
SYNE1-203ENST00000354674 ZFYVE16Q7Z3T8 1539 aa14.57□□□□□ -0.08
SYNE1-203ENST00000354674 KDM5CP41229 1560 aa14.57□□□□□ -0.08
SYNE1-203ENST00000354674 KIF15Q9NS87 1388 aa14.56□□□□□ -0.08
SYNE1-203ENST00000354674 ANKRD50Q9ULJ7 1429 aa14.56□□□□□ -0.08
SYNE1-203ENST00000354674 ZNF518AQ6AHZ1 1483 aa14.56□□□□□ -0.08
SYNE1-203ENST00000354674 CCDC136Q96JN2 1154 aa14.56□□□□□ -0.08
SYNE1-203ENST00000354674 POGZQ7Z3K3 1410 aa14.56□□□□□ -0.08
SYNE1-203ENST00000354674 AFAP1Q8N556 730 aa14.55□□□□□ -0.08
SYNE1-203ENST00000354674 ATP7AQ04656 1500 aa14.54□□□□□ -0.08
SYNE1-203ENST00000354674 DUOX2Q9NRD8 1548 aa14.54□□□□□ -0.08
SYNE1-203ENST00000354674 TEX14Q8IWB6 1497 aa14.53□□□□□ -0.08
SYNE1-203ENST00000354674 SPAG9O60271 1321 aaKnown RBP14.53□□□□□ -0.08
SYNE1-203ENST00000354674 RICTORQ6R327 1708 aa14.52□□□□□ -0.08
SYNE1-203ENST00000354674 KIDINS220Q9ULH0 1771 aa14.52□□□□□ -0.09
SYNE1-203ENST00000354674 DENND4BO75064 1496 aaPredicted RBP14.52□□□□□ -0.09
SYNE1-203ENST00000354674 MLH3Q9UHC1 1453 aa14.52□□□□□ -0.09
SYNE1-203ENST00000354674 KDM5DQ9BY66 1539 aa14.51□□□□□ -0.09
SYNE1-203ENST00000354674 ERBINQ96RT1 1412 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms