RNA–Protein interactions for RNA: ENST00000346562.6

NPAS3-201, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NPAS3, Length 5,847 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-201ENST00000346562 NOP58Q9Y2X3 529 aaKnown RBP29.38■■■□□ 2.29
NPAS3-201ENST00000346562 SAFB2Q14151 953 aaKnown RBP eCLIP29.37■■■□□ 2.29
NPAS3-201ENST00000346562 CALD1Q05682 793 aaKnown RBP29.36■■■□□ 2.29
NPAS3-201ENST00000346562 TMX4Q9H1E5 349 aaPredicted RBP29.36■■■□□ 2.29
NPAS3-201ENST00000346562 IPO8O15397 1037 aaKnown RBP29.35■■■□□ 2.29
NPAS3-201ENST00000346562 CSB-PGBD3P0DP91 1061 aa29.34■■■□□ 2.29
NPAS3-201ENST00000346562 KIAA1211Q6ZU35 1233 aa29.32■■■□□ 2.28
NPAS3-201ENST00000346562 DRC7Q8IY82 874 aa29.31■■■□□ 2.28
NPAS3-201ENST00000346562 GGT6Q6P531 493 aa29.3■■■□□ 2.28
NPAS3-201ENST00000346562 KTN1Q86UP2 1357 aaKnown RBP29.3■■■□□ 2.28
NPAS3-201ENST00000346562 PAK3O75914 559 aaPredicted RBP29.3■■■□□ 2.28
NPAS3-201ENST00000346562 STK26Q9P289 416 aa29.3■■■□□ 2.28
NPAS3-201ENST00000346562 CHMP4AQ9BY43 222 aa29.28■■■□□ 2.28
NPAS3-201ENST00000346562 NCBP3Q53F19 620 aaKnown RBP29.28■■■□□ 2.28
NPAS3-201ENST00000346562 CARMIL1Q5VZK9 1371 aa29.27■■■□□ 2.28
NPAS3-201ENST00000346562 TIMELESSQ9UNS1 1208 aa29.27■■■□□ 2.28
NPAS3-201ENST00000346562 KIAA2012Q0VF49 1180 aa29.26■■■□□ 2.28
NPAS3-201ENST00000346562 CARMIL2Q6F5E8 1435 aa29.25■■■□□ 2.27
NPAS3-201ENST00000346562 CUX2O14529 1486 aa29.24■■■□□ 2.27
NPAS3-201ENST00000346562 ARHGAP35Q9NRY4 1499 aa29.23■■■□□ 2.27
NPAS3-201ENST00000346562 MSNP26038 577 aaKnown RBP29.23■■■□□ 2.27
NPAS3-201ENST00000346562 ZNF330Q9Y3S2 320 aaPredicted RBP29.21■■■□□ 2.27
NPAS3-201ENST00000346562 PTMSP20962 102 aa29.21■■■□□ 2.27
NPAS3-201ENST00000346562 HTATSF1O43719 755 aaKnown RBP29.2■■■□□ 2.26
NPAS3-201ENST00000346562 EIF3AQ14152 1382 aaKnown RBP29.19■■■□□ 2.26
NPAS3-201ENST00000346562 B4GALNT3Q6L9W6 998 aa29.19■■■□□ 2.26
NPAS3-201ENST00000346562 APBB1O00213 710 aa29.17■■■□□ 2.26
NPAS3-201ENST00000346562 BAZ1AQ9NRL2 1556 aaPredicted RBP29.17■■■□□ 2.26
NPAS3-201ENST00000346562 SPAG9O60271 1321 aaKnown RBP29.17■■■□□ 2.26
NPAS3-201ENST00000346562 PKD2Q13563 968 aa29.15■■■□□ 2.26
NPAS3-201ENST00000346562 ROCK2O75116 1388 aaKnown RBP29.14■■■□□ 2.26
NPAS3-201ENST00000346562 CCER2I3L3R5 266 aa29.14■■■□□ 2.26
NPAS3-201ENST00000346562 GPATCH3Q96I76 525 aa29.14■■■□□ 2.26
NPAS3-201ENST00000346562 SETD5Q9C0A6 1442 aa29.14■■■□□ 2.26
NPAS3-201ENST00000346562 HDAC5Q9UQL6 1122 aa29.13■■■□□ 2.25
NPAS3-201ENST00000346562 CCDC9Q9Y3X0 531 aaKnown RBP29.13■■■□□ 2.25
NPAS3-201ENST00000346562 U2AF1L5P0DN76 240 aaPredicted RBP29.13■■■□□ 2.25
NPAS3-201ENST00000346562 U2AF1Q01081 240 aaKnown RBP eCLIP29.13■■■□□ 2.25
NPAS3-201ENST00000346562 GORABQ5T7V8 394 aa29.13■■■□□ 2.25
NPAS3-201ENST00000346562 SPRYD3Q8NCJ5 442 aa29.13■■■□□ 2.25
NPAS3-201ENST00000346562 ITPRIPQ8IWB1 547 aa29.12■■■□□ 2.25
NPAS3-201ENST00000346562 RWDD1Q9H446 243 aaPredicted RBP29.12■■■□□ 2.25
NPAS3-201ENST00000346562 HSPA5P11021 654 aaKnown RBP29.12■■■□□ 2.25
NPAS3-201ENST00000346562 STK31Q9BXU1 1019 aa29.12■■■□□ 2.25
NPAS3-201ENST00000346562 MYO15BQ96JP2 1530 aa29.1■■■□□ 2.25
NPAS3-201ENST00000346562 TAF7LQ5H9L4 462 aa29.09■■■□□ 2.25
NPAS3-201ENST00000346562 GBP4Q96PP9 640 aa29.09■■■□□ 2.25
NPAS3-201ENST00000346562 RALBP1Q15311 655 aa29.07■■■□□ 2.24
NPAS3-201ENST00000346562 TPM4P67936 248 aa29.06■■■□□ 2.24
NPAS3-201ENST00000346562 EFCAB2Q5VUJ9 269 aa29.06■■■□□ 2.24
NPAS3-201ENST00000346562 EID1Q9Y6B2 187 aa29.05■■■□□ 2.24
NPAS3-201ENST00000346562 CHMP3Q9Y3E7 222 aa29.05■■■□□ 2.24
NPAS3-201ENST00000346562 CCDC34Q96HJ3 373 aa29.04■■■□□ 2.24
NPAS3-201ENST00000346562 G3V3G9 751 aa29.04■■■□□ 2.24
NPAS3-201ENST00000346562 DCAF8Q5TAQ9 597 aa29.04■■■□□ 2.24
NPAS3-201ENST00000346562 ANKRD30AQ9BXX3 1397 aa29.02■■■□□ 2.24
NPAS3-201ENST00000346562 NOC3LQ8WTT2 800 aaKnown RBP29.02■■■□□ 2.24
NPAS3-201ENST00000346562 TERF2IPQ9NYB0 399 aa29.02■■■□□ 2.24
NPAS3-201ENST00000346562 SYAP1Q96A49 352 aaPredicted RBP29.01■■■□□ 2.23
NPAS3-201ENST00000346562 RTN4Q9NQC3 1192 aaKnown RBP29.01■■■□□ 2.23
NPAS3-201ENST00000346562 HMMRO75330 724 aa29■■■□□ 2.23
NPAS3-201ENST00000346562 PMFBP1Q8TBY8 1022 aa29■■■□□ 2.23
NPAS3-201ENST00000346562 HSP90B1P14625 803 aaKnown RBP28.99■■■□□ 2.23
NPAS3-201ENST00000346562 NUP155O75694 1391 aa28.97■■■□□ 2.23
NPAS3-201ENST00000346562 LMOD3Q0VAK6 560 aa28.95■■■□□ 2.22
NPAS3-201ENST00000346562 RCAN3Q9UKA8 241 aa28.95■■■□□ 2.22
NPAS3-201ENST00000346562 PDS5BQ9NTI5 1447 aa28.93■■■□□ 2.22
NPAS3-201ENST00000346562 CSPP1Q1MSJ5 1256 aa28.92■■■□□ 2.22
NPAS3-201ENST00000346562 NGDNQ8NEJ9 315 aaKnown RBP28.91■■■□□ 2.22
NPAS3-201ENST00000346562 FMN1Q68DA7 1419 aa28.91■■■□□ 2.22
NPAS3-201ENST00000346562 TRIM6-TRIM34B2RNG4 842 aa28.91■■■□□ 2.22
NPAS3-201ENST00000346562 SMC4Q9NTJ3 1288 aa28.9■■■□□ 2.22
NPAS3-201ENST00000346562 RASSF8Q8NHQ8 419 aa28.89■■■□□ 2.22
NPAS3-201ENST00000346562 FOXD1Q16676 465 aa28.88■■■□□ 2.21
NPAS3-201ENST00000346562 MPHOSPH9Q99550 1183 aa28.88■■■□□ 2.21
NPAS3-201ENST00000346562 AMPHP49418 695 aa28.87■■■□□ 2.21
NPAS3-201ENST00000346562 KIF3BO15066 747 aa28.86■■■□□ 2.21
NPAS3-201ENST00000346562 PRM3Q9NNZ6 103 aa28.86■■■□□ 2.21
NPAS3-201ENST00000346562 VPS8Q8N3P4 1428 aa28.84■■■□□ 2.21
NPAS3-201ENST00000346562 TCERG1O14776 1098 aaKnown RBP28.82■■■□□ 2.2
NPAS3-201ENST00000346562 GTF2E1P29083 439 aaPredicted RBP28.82■■■□□ 2.2
NPAS3-201ENST00000346562 SLC4A10Q6U841 1118 aa28.82■■■□□ 2.2
NPAS3-201ENST00000346562 FRAT2O75474 233 aaPredicted RBP28.81■■■□□ 2.2
NPAS3-201ENST00000346562 SOGA1O94964 1423 aa28.81■■■□□ 2.2
NPAS3-201ENST00000346562 WASHC2CQ9Y4E1 1318 aa28.81■■■□□ 2.2
NPAS3-201ENST00000346562 MFAP1P55081 439 aaKnown RBP28.8■■■□□ 2.2
NPAS3-201ENST00000346562 TOMM22Q9NS69 142 aa28.77■■■□□ 2.2
NPAS3-201ENST00000346562 KIF3AQ9Y496 699 aa28.77■■■□□ 2.2
NPAS3-201ENST00000346562 RSPH4AQ5TD94 716 aa28.76■■■□□ 2.2
NPAS3-201ENST00000346562 MARCH6O60337 910 aa28.76■■■□□ 2.19
NPAS3-201ENST00000346562 A0A0U1RQG5 324 aaPredicted RBP28.74■■■□□ 2.19
NPAS3-201ENST00000346562 VPS53Q5VIR6 699 aa28.74■■■□□ 2.19
NPAS3-201ENST00000346562 CENPJQ9HC77 1338 aaPredicted RBP28.74■■■□□ 2.19
NPAS3-201ENST00000346562 CEP89Q96ST8 783 aa28.73■■■□□ 2.19
NPAS3-201ENST00000346562 LTV1Q96GA3 475 aaPredicted RBP28.72■■■□□ 2.19
NPAS3-201ENST00000346562 SLKQ9H2G2 1235 aaPredicted RBP28.72■■■□□ 2.19
NPAS3-201ENST00000346562 KIF16BQ96L93 1317 aa28.72■■■□□ 2.19
NPAS3-201ENST00000346562 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.7■■■□□ 2.18
NPAS3-201ENST00000346562 NUTM2DQ5VT03 806 aaPredicted RBP28.7■■■□□ 2.18
NPAS3-201ENST00000346562 GOLGA6L1Q8N7Z2 621 aa28.7■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms