RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 SHROOM2Q13796 1616 aa18.69■□□□□ 0.58
COL18A1-201ENST00000342220 ATP10BO94823 1461 aa18.66■□□□□ 0.58
COL18A1-201ENST00000342220 ARHGEF11O15085 1522 aa18.65■□□□□ 0.58
COL18A1-201ENST00000342220 TROQ12816 1431 aaPredicted RBP18.65■□□□□ 0.58
COL18A1-201ENST00000342220 EHBP1L1Q8N3D4 1523 aa18.64■□□□□ 0.58
COL18A1-201ENST00000342220 UACAQ9BZF9 1416 aa18.64■□□□□ 0.57
COL18A1-201ENST00000342220 POLR3GLQ9BT43 218 aa18.64■□□□□ 0.57
COL18A1-201ENST00000342220 RAPGEF6Q8TEU7 1601 aa18.63■□□□□ 0.57
COL18A1-201ENST00000342220 SENP3Q9H4L4 574 aaPredicted RBP18.61■□□□□ 0.57
COL18A1-201ENST00000342220 CLSPNQ9HAW4 1339 aa18.61■□□□□ 0.57
COL18A1-201ENST00000342220 TONSLQ96HA7 1378 aa18.6■□□□□ 0.57
COL18A1-201ENST00000342220 SUPT6HQ7KZ85 1726 aaKnown RBP18.6■□□□□ 0.57
COL18A1-201ENST00000342220 MPHOSPH9Q99550 1183 aa18.59■□□□□ 0.57
COL18A1-201ENST00000342220 AFAP1Q8N556 730 aa18.58■□□□□ 0.56
COL18A1-201ENST00000342220 KDM2AQ9Y2K7 1162 aa18.57■□□□□ 0.56
COL18A1-201ENST00000342220 CLASP1Q7Z460 1538 aa18.54■□□□□ 0.56
COL18A1-201ENST00000342220 RGL3Q3MIN7 710 aa18.54■□□□□ 0.56
COL18A1-201ENST00000342220 PTPN23Q9H3S7 1636 aa18.53■□□□□ 0.56
COL18A1-201ENST00000342220 PKD2Q13563 968 aa18.53■□□□□ 0.56
COL18A1-201ENST00000342220 EFCAB2Q5VUJ9 269 aa18.53■□□□□ 0.56
COL18A1-201ENST00000342220 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.52■□□□□ 0.566e-7■■■□□ 16.6
COL18A1-201ENST00000342220 ANP32EQ9BTT0 268 aa18.52■□□□□ 0.56
COL18A1-201ENST00000342220 ADCY10Q96PN6 1610 aa18.52■□□□□ 0.55
COL18A1-201ENST00000342220 NAIPQ13075 1403 aa18.52■□□□□ 0.55
COL18A1-201ENST00000342220 ABCA8O94911 1581 aa18.51■□□□□ 0.55
COL18A1-201ENST00000342220 GPATCH8Q9UKJ3 1502 aaKnown RBP18.5■□□□□ 0.55
COL18A1-201ENST00000342220 KIF14Q15058 1648 aa18.5■□□□□ 0.55
COL18A1-201ENST00000342220 ABCC5O15440 1437 aa18.49■□□□□ 0.55
COL18A1-201ENST00000342220 DDX10Q13206 875 aaKnown RBP18.48■□□□□ 0.55
COL18A1-201ENST00000342220 NUP155O75694 1391 aa18.48■□□□□ 0.55
COL18A1-201ENST00000342220 DAPK1P53355 1430 aa18.48■□□□□ 0.55
COL18A1-201ENST00000342220 PLPPR3Q6T4P5 718 aa18.46■□□□□ 0.55
COL18A1-201ENST00000342220 ANKRD30AQ9BXX3 1397 aa18.45■□□□□ 0.54
COL18A1-201ENST00000342220 MIA2Q96PC5 1412 aa18.45■□□□□ 0.54
COL18A1-201ENST00000342220 ARHGAP5Q13017 1502 aa18.45■□□□□ 0.54
COL18A1-201ENST00000342220 CAMSAP2Q08AD1 1489 aa18.45■□□□□ 0.54
COL18A1-201ENST00000342220 HFM1A2PYH4 1435 aa18.45■□□□□ 0.54
COL18A1-201ENST00000342220 L3MBTL2Q969R5 705 aa18.41■□□□□ 0.54
COL18A1-201ENST00000342220 KIF15Q9NS87 1388 aa18.4■□□□□ 0.54
COL18A1-201ENST00000342220 TCOF1Q13428 1488 aaKnown RBP18.4■□□□□ 0.54
COL18A1-201ENST00000342220 CHGAP10645 457 aaKnown RBP18.4■□□□□ 0.54
COL18A1-201ENST00000342220 SPAG9O60271 1321 aaKnown RBP18.4■□□□□ 0.54
COL18A1-201ENST00000342220 GGT6Q6P531 493 aa18.4■□□□□ 0.54
COL18A1-201ENST00000342220 RAPGEF3O95398 923 aa18.39■□□□□ 0.53
COL18A1-201ENST00000342220 KIF3BO15066 747 aa18.38■□□□□ 0.53
COL18A1-201ENST00000342220 FAM69CQ0P6D2 419 aa18.38■□□□□ 0.53
COL18A1-201ENST00000342220 PPP1R15AO75807 674 aaPredicted RBP18.38■□□□□ 0.53
COL18A1-201ENST00000342220 C9orf84Q5VXU9 1444 aa18.37■□□□□ 0.53
COL18A1-201ENST00000342220 ANKRD50Q9ULJ7 1429 aa18.36■□□□□ 0.53
COL18A1-201ENST00000342220 MLECQ14165 292 aa18.34■□□□□ 0.53
COL18A1-201ENST00000342220 MAPKBP1O60336 1514 aa18.34■□□□□ 0.53
COL18A1-201ENST00000342220 ABCC2Q92887 1545 aa18.33■□□□□ 0.53
COL18A1-201ENST00000342220 NCOA1Q15788 1441 aa18.33■□□□□ 0.52
COL18A1-201ENST00000342220 DCAF11Q8TEB1 546 aa18.32■□□□□ 0.52
COL18A1-201ENST00000342220 TRHP20396 242 aaPredicted RBP18.31■□□□□ 0.52
COL18A1-201ENST00000342220 ASXL2Q76L83 1435 aa18.31■□□□□ 0.52
COL18A1-201ENST00000342220 KDM6BO15054 1643 aa18.31■□□□□ 0.52
COL18A1-201ENST00000342220 ITSN2Q9NZM3 1697 aa18.31■□□□□ 0.52
COL18A1-201ENST00000342220 SCAPERQ9BY12 1400 aa18.3■□□□□ 0.52
COL18A1-201ENST00000342220 AKNAQ7Z591 1439 aa18.28■□□□□ 0.52
COL18A1-201ENST00000342220 GCC2Q8IWJ2 1684 aa18.28■□□□□ 0.52
COL18A1-201ENST00000342220 ERICH6Q7L0X2 663 aa18.27■□□□□ 0.52
COL18A1-201ENST00000342220 SYCP2Q9BX26 1530 aa18.26■□□□□ 0.51
COL18A1-201ENST00000342220 ABCC10Q5T3U5 1492 aa18.25■□□□□ 0.51
COL18A1-201ENST00000342220 TRAPPC8Q9Y2L5 1435 aa18.25■□□□□ 0.51
COL18A1-201ENST00000342220 UHRF1BP1LA0JNW5 1464 aa18.25■□□□□ 0.51
COL18A1-201ENST00000342220 CROCC2H7BZ55 1655 aa18.25■□□□□ 0.51
COL18A1-201ENST00000342220 RSPH4AQ5TD94 716 aa18.24■□□□□ 0.51
COL18A1-201ENST00000342220 CDC42BPAQ5VT25 1732 aa18.24■□□□□ 0.51
COL18A1-201ENST00000342220 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.23■□□□□ 0.511e-6■□□□□ 10.7
COL18A1-201ENST00000342220 TTC37Q6PGP7 1564 aa18.22■□□□□ 0.51
COL18A1-201ENST00000342220 HSPA5P11021 654 aaKnown RBP18.22■□□□□ 0.51
COL18A1-201ENST00000342220 NUTM2DQ5VT03 806 aaPredicted RBP18.22■□□□□ 0.51
COL18A1-201ENST00000342220 NBPF8Q3BBV2 869 aa18.22■□□□□ 0.51
COL18A1-201ENST00000342220 DNMT1P26358 1616 aaKnown RBP18.21■□□□□ 0.51
COL18A1-201ENST00000342220 CCDC141Q6ZP82 1450 aa18.2■□□□□ 0.5
COL18A1-201ENST00000342220 WDR7Q9Y4E6 1490 aa18.2■□□□□ 0.5
COL18A1-201ENST00000342220 CD109Q6YHK3 1445 aa18.2■□□□□ 0.5
COL18A1-201ENST00000342220 SUPT16HQ9Y5B9 1047 aaKnown RBP18.2■□□□□ 0.5
COL18A1-201ENST00000342220 PLEKHH2Q8IVE3 1493 aa18.2■□□□□ 0.5
COL18A1-201ENST00000342220 ROCK1Q13464 1354 aa18.19■□□□□ 0.5
COL18A1-201ENST00000342220 SENP3-EIF4A1A0A087X0R7 540 aa18.19■□□□□ 0.5
COL18A1-201ENST00000342220 EIF4G2P78344 907 aaKnown RBP eCLIP18.19■□□□□ 0.52e-6■■■□□ 16.1
COL18A1-201ENST00000342220 PLCH2O75038 1416 aa18.19■□□□□ 0.5
COL18A1-201ENST00000342220 FANCAO15360 1455 aa18.19■□□□□ 0.5
COL18A1-201ENST00000342220 ZCCHC11Q5TAX3 1644 aaKnown RBP18.17■□□□□ 0.5
COL18A1-201ENST00000342220 ARID4BQ4LE39 1312 aaPredicted RBP18.16■□□□□ 0.5
COL18A1-201ENST00000342220 KDM5BQ9UGL1 1544 aa18.16■□□□□ 0.5
COL18A1-201ENST00000342220 ADGBQ8N7X0 1667 aa18.16■□□□□ 0.5
COL18A1-201ENST00000342220 CARD11Q9BXL7 1154 aa18.16■□□□□ 0.5
COL18A1-201ENST00000342220 PREX2Q70Z35 1606 aa18.15■□□□□ 0.5
COL18A1-201ENST00000342220 TSHZ2Q9NRE2 1034 aa18.14■□□□□ 0.5
COL18A1-201ENST00000342220 ADGRL1O94910 1474 aa18.14■□□□□ 0.49
COL18A1-201ENST00000342220 MBD5Q9P267 1494 aa18.14■□□□□ 0.49
COL18A1-201ENST00000342220 ARHGEF12Q9NZN5 1544 aa18.13■□□□□ 0.49
COL18A1-201ENST00000342220 ANKRD30BQ9BXX2 1392 aa18.12■□□□□ 0.49
COL18A1-201ENST00000342220 CDC42BPBQ9Y5S2 1711 aa18.12■□□□□ 0.49
COL18A1-201ENST00000342220 TIMELESSQ9UNS1 1208 aa18.11■□□□□ 0.49
COL18A1-201ENST00000342220 SAMD9LQ8IVG5 1584 aa18.11■□□□□ 0.49
COL18A1-201ENST00000342220 WASHC2CQ9Y4E1 1318 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 152.2 ms