RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 CDK13Q14004 1512 aaKnown RBP16.57■□□□□ 0.24
RTN3-203ENST00000341307 NEFLP07196 543 aa16.57■□□□□ 0.24
RTN3-203ENST00000341307 NCOA2Q15596 1464 aa16.57■□□□□ 0.24
RTN3-203ENST00000341307 HECW1Q76N89 1606 aa16.56■□□□□ 0.24
RTN3-203ENST00000341307 FGD6Q6ZV73 1430 aa16.55■□□□□ 0.24
RTN3-203ENST00000341307 EPRSP07814 1512 aaKnown RBP16.55■□□□□ 0.24
RTN3-203ENST00000341307 NBR1Q14596 966 aa16.54■□□□□ 0.24
RTN3-203ENST00000341307 EHBP1L1Q8N3D4 1523 aa16.53■□□□□ 0.24
RTN3-203ENST00000341307 CCDC18Q5T9S5 1454 aa16.53■□□□□ 0.24
RTN3-203ENST00000341307 SUPT6HQ7KZ85 1726 aaKnown RBP16.52■□□□□ 0.23
RTN3-203ENST00000341307 SETD5Q9C0A6 1442 aa16.51■□□□□ 0.23
RTN3-203ENST00000341307 ADCY10Q96PN6 1610 aa16.51■□□□□ 0.23
RTN3-203ENST00000341307 PLEKHG5O94827 1062 aa16.5■□□□□ 0.23
RTN3-203ENST00000341307 MYOM3Q5VTT5 1437 aa16.5■□□□□ 0.23
RTN3-203ENST00000341307 UACAQ9BZF9 1416 aa16.5■□□□□ 0.23
RTN3-203ENST00000341307 CDK11AQ9UQ88 783 aaPredicted RBP16.48■□□□□ 0.23
RTN3-203ENST00000341307 PTPRKQ15262 1439 aa16.48■□□□□ 0.23
RTN3-203ENST00000341307 NUP153P49790 1475 aaKnown RBP16.47■□□□□ 0.23
RTN3-203ENST00000341307 TRHP20396 242 aaPredicted RBP16.47■□□□□ 0.23
RTN3-203ENST00000341307 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.46■□□□□ 0.23
RTN3-203ENST00000341307 NPM1P06748 294 aaKnown RBP eCLIP16.45■□□□□ 0.22
RTN3-203ENST00000341307 RAPGEF6Q8TEU7 1601 aa16.45■□□□□ 0.22
RTN3-203ENST00000341307 NOP58Q9Y2X3 529 aaKnown RBP16.44■□□□□ 0.22
RTN3-203ENST00000341307 PAK3O75914 559 aaPredicted RBP16.43■□□□□ 0.22
RTN3-203ENST00000341307 MAPKBP1O60336 1514 aa16.43■□□□□ 0.22
RTN3-203ENST00000341307 PTPN23Q9H3S7 1636 aa16.43■□□□□ 0.22
RTN3-203ENST00000341307 ABCC2Q92887 1545 aa16.41■□□□□ 0.22
RTN3-203ENST00000341307 ABCA8O94911 1581 aa16.41■□□□□ 0.22
RTN3-203ENST00000341307 DAXXQ9UER7 740 aaPredicted RBP16.4■□□□□ 0.22
RTN3-203ENST00000341307 CHIC2Q9UKJ5 165 aa16.4■□□□□ 0.22
RTN3-203ENST00000341307 ATP10BO94823 1461 aa16.37■□□□□ 0.21
RTN3-203ENST00000341307 SIN3AQ96ST3 1273 aa16.37■□□□□ 0.21
RTN3-203ENST00000341307 UHRF1BP1LA0JNW5 1464 aa16.36■□□□□ 0.21
RTN3-203ENST00000341307 RRP7BPQ9NSQ0 103 aa16.36■□□□□ 0.21
RTN3-203ENST00000341307 KDM5BQ9UGL1 1544 aa16.35■□□□□ 0.21
RTN3-203ENST00000341307 PODXL2Q9NZ53 605 aa16.35■□□□□ 0.21
RTN3-203ENST00000341307 ASXL2Q76L83 1435 aa16.35■□□□□ 0.21
RTN3-203ENST00000341307 FAM69CQ0P6D2 419 aa16.35■□□□□ 0.21
RTN3-203ENST00000341307 HFM1A2PYH4 1435 aa16.34■□□□□ 0.21
RTN3-203ENST00000341307 ZNF644Q9H582 1327 aaPredicted RBP16.34■□□□□ 0.21
RTN3-203ENST00000341307 ZCCHC11Q5TAX3 1644 aaKnown RBP16.34■□□□□ 0.21
RTN3-203ENST00000341307 TCOF1Q13428 1488 aaKnown RBP16.33■□□□□ 0.21
RTN3-203ENST00000341307 NAIPQ13075 1403 aa16.33■□□□□ 0.2
RTN3-203ENST00000341307 RTL5Q5HYW3 569 aaPredicted RBP16.32■□□□□ 0.2
RTN3-203ENST00000341307 MIA2Q96PC5 1412 aa16.31■□□□□ 0.2
RTN3-203ENST00000341307 TRIM52Q96A61 297 aa16.29■□□□□ 0.2
RTN3-203ENST00000341307 TROQ12816 1431 aaPredicted RBP16.29■□□□□ 0.2
RTN3-203ENST00000341307 KIF14Q15058 1648 aa16.29■□□□□ 0.2
RTN3-203ENST00000341307 C11orf95C9JLR9 678 aaPredicted RBP16.28■□□□□ 0.2
RTN3-203ENST00000341307 WASHC2AQ641Q2 1341 aa16.27■□□□□ 0.19
RTN3-203ENST00000341307 ZNF777Q9ULD5 760 aaPredicted RBP16.26■□□□□ 0.19
RTN3-203ENST00000341307 KDM6BO15054 1643 aa16.26■□□□□ 0.19
RTN3-203ENST00000341307 PLEKHD1A6NEE1 506 aa16.25■□□□□ 0.19
RTN3-203ENST00000341307 IRX6P78412 446 aaPredicted RBP16.24■□□□□ 0.19
RTN3-203ENST00000341307 ABCC10Q5T3U5 1492 aa16.24■□□□□ 0.19
RTN3-203ENST00000341307 CFDP1Q9UEE9 299 aaPredicted RBP16.23■□□□□ 0.19
RTN3-203ENST00000341307 WDR7Q9Y4E6 1490 aa16.23■□□□□ 0.19
RTN3-203ENST00000341307 DAPK1P53355 1430 aa16.23■□□□□ 0.19
RTN3-203ENST00000341307 GPATCH8Q9UKJ3 1502 aaKnown RBP16.22■□□□□ 0.19
RTN3-203ENST00000341307 ABCC5O15440 1437 aa16.22■□□□□ 0.19
RTN3-203ENST00000341307 WASHC2CQ9Y4E1 1318 aa16.2■□□□□ 0.18
RTN3-203ENST00000341307 DIP2BQ9P265 1576 aa16.2■□□□□ 0.18
RTN3-203ENST00000341307 GCC2Q8IWJ2 1684 aa16.2■□□□□ 0.18
RTN3-203ENST00000341307 KIF13AQ9H1H9 1805 aa16.2■□□□□ 0.18
RTN3-203ENST00000341307 TIMELESSQ9UNS1 1208 aa16.19■□□□□ 0.18
RTN3-203ENST00000341307 CAMSAP2Q08AD1 1489 aa16.19■□□□□ 0.18
RTN3-203ENST00000341307 DNMT1P26358 1616 aaKnown RBP16.19■□□□□ 0.18
RTN3-203ENST00000341307 ZMYND15Q9H091 742 aa16.17■□□□□ 0.18
RTN3-203ENST00000341307 TSPOAP1O95153 1857 aa16.17■□□□□ 0.18
RTN3-203ENST00000341307 BRPF3Q9ULD4 1205 aa16.16■□□□□ 0.18
RTN3-203ENST00000341307 ITSN2Q9NZM3 1697 aa16.16■□□□□ 0.18
RTN3-203ENST00000341307 AKNAQ7Z591 1439 aa16.15■□□□□ 0.18
RTN3-203ENST00000341307 DENND4BO75064 1496 aaPredicted RBP16.15■□□□□ 0.18
RTN3-203ENST00000341307 FOXD1Q16676 465 aa16.15■□□□□ 0.18
RTN3-203ENST00000341307 IPO9Q96P70 1041 aaKnown RBP16.15■□□□□ 0.18
RTN3-203ENST00000341307 PPP4R2Q9NY27 417 aa16.14■□□□□ 0.17
RTN3-203ENST00000341307 CDC42BPAQ5VT25 1732 aa16.13■□□□□ 0.17
RTN3-203ENST00000341307 CCER2I3L3R5 266 aa16.12■□□□□ 0.17
RTN3-203ENST00000341307 CD109Q6YHK3 1445 aa16.12■□□□□ 0.17
RTN3-203ENST00000341307 DDX10Q13206 875 aaKnown RBP16.12■□□□□ 0.17
RTN3-203ENST00000341307 RSPH6AQ9H0K4 717 aa16.12■□□□□ 0.17
RTN3-203ENST00000341307 PPP1R15AO75807 674 aaPredicted RBP16.11■□□□□ 0.17
RTN3-203ENST00000341307 MPHOSPH9Q99550 1183 aa16.11■□□□□ 0.17
RTN3-203ENST00000341307 ROCK1Q13464 1354 aa16.11■□□□□ 0.17
RTN3-203ENST00000341307 TONSLQ96HA7 1378 aa16.11■□□□□ 0.17
RTN3-203ENST00000341307 HIRIP3Q9BW71 556 aaPredicted RBP16.1■□□□□ 0.17
RTN3-203ENST00000341307 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.1■□□□□ 0.171e-77■■□□□ 12.1
RTN3-203ENST00000341307 ZBTB47Q9UFB7 747 aaPredicted RBP16.09■□□□□ 0.17
RTN3-203ENST00000341307 TTC37Q6PGP7 1564 aa16.09■□□□□ 0.17
RTN3-203ENST00000341307 VSIG10Q8N0Z9 540 aa16.08■□□□□ 0.17
RTN3-203ENST00000341307 HNRNPMP52272 730 aaKnown RBP eCLIP16.07■□□□□ 0.16
RTN3-203ENST00000341307 GLIPR1L2Q4G1C9 344 aa16.07■□□□□ 0.16
RTN3-203ENST00000341307 NCOA1Q15788 1441 aa16.07■□□□□ 0.16
RTN3-203ENST00000341307 GLI2P10070 1586 aa16.06■□□□□ 0.16
RTN3-203ENST00000341307 ANP32AP39687 249 aaKnown RBP16.05■□□□□ 0.16
RTN3-203ENST00000341307 B4GALNT3Q6L9W6 998 aa16.05■□□□□ 0.16
RTN3-203ENST00000341307 CROCC2H7BZ55 1655 aa16.05■□□□□ 0.16
RTN3-203ENST00000341307 PPRC1Q5VV67 1664 aaKnown RBP16.05■□□□□ 0.16
RTN3-203ENST00000341307 MAP3K4Q9Y6R4 1608 aa16.05■□□□□ 0.16
RTN3-203ENST00000341307 COL17A1Q9UMD9 1497 aaPredicted RBP16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms