RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 TTC37Q6PGP7 1564 aa26.02■■□□□ 1.76
CLDN4-201ENST00000340958 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.01■■□□□ 1.75
CLDN4-201ENST00000340958 MIA2Q96PC5 1412 aa26■■□□□ 1.75
CLDN4-201ENST00000340958 PTPN23Q9H3S7 1636 aa25.98■■□□□ 1.75
CLDN4-201ENST00000340958 CFDP1Q9UEE9 299 aaPredicted RBP25.98■■□□□ 1.75
CLDN4-201ENST00000340958 COL17A1Q9UMD9 1497 aaPredicted RBP25.94■■□□□ 1.74
CLDN4-201ENST00000340958 ZNF777Q9ULD5 760 aaPredicted RBP25.93■■□□□ 1.74
CLDN4-201ENST00000340958 ITSN2Q9NZM3 1697 aa25.92■■□□□ 1.74
CLDN4-201ENST00000340958 GPATCH8Q9UKJ3 1502 aaKnown RBP25.92■■□□□ 1.74
CLDN4-201ENST00000340958 CCER1Q8TC90 406 aaPredicted RBP25.91■■□□□ 1.74
CLDN4-201ENST00000340958 TCOF1Q13428 1488 aaKnown RBP25.91■■□□□ 1.74
CLDN4-201ENST00000340958 MYO5CQ9NQX4 1742 aa25.89■■□□□ 1.73
CLDN4-201ENST00000340958 ZNF644Q9H582 1327 aaPredicted RBP25.86■■□□□ 1.73
CLDN4-201ENST00000340958 NEO1Q92859 1461 aa25.85■■□□□ 1.73
CLDN4-201ENST00000340958 HRCP23327 699 aa25.85■■□□□ 1.73
CLDN4-201ENST00000340958 FANCAO15360 1455 aa25.83■■□□□ 1.73
CLDN4-201ENST00000340958 CFAP74Q9C0B2 1584 aa25.82■■□□□ 1.72
CLDN4-201ENST00000340958 ARAP3Q8WWN8 1544 aa25.82■■□□□ 1.72
CLDN4-201ENST00000340958 PLCH2O75038 1416 aa25.82■■□□□ 1.72
CLDN4-201ENST00000340958 CDC42BPAQ5VT25 1732 aa25.81■■□□□ 1.72
CLDN4-201ENST00000340958 CAMSAP2Q08AD1 1489 aa25.8■■□□□ 1.72
CLDN4-201ENST00000340958 CHIC2Q9UKJ5 165 aa25.79■■□□□ 1.72
CLDN4-201ENST00000340958 CDC42BPBQ9Y5S2 1711 aa25.78■■□□□ 1.72
CLDN4-201ENST00000340958 SETD5Q9C0A6 1442 aa25.77■■□□□ 1.72
CLDN4-201ENST00000340958 PREX2Q70Z35 1606 aa25.77■■□□□ 1.72
CLDN4-201ENST00000340958 AKNAQ7Z591 1439 aa25.77■■□□□ 1.72
CLDN4-201ENST00000340958 PTPRKQ15262 1439 aa25.76■■□□□ 1.71
CLDN4-201ENST00000340958 ARHGAP5Q13017 1502 aa25.75■■□□□ 1.71
CLDN4-201ENST00000340958 ZEB1P37275 1124 aaPredicted RBP25.74■■□□□ 1.71
CLDN4-201ENST00000340958 DAPK1P53355 1430 aa25.74■■□□□ 1.71
CLDN4-201ENST00000340958 FRMPD1Q5SYB0 1578 aa25.73■■□□□ 1.71
CLDN4-201ENST00000340958 RAB3GAP2Q9H2M9 1393 aa25.73■■□□□ 1.71
CLDN4-201ENST00000340958 RICTORQ6R327 1708 aa25.71■■□□□ 1.71
CLDN4-201ENST00000340958 RAPGEF3O95398 923 aa25.7■■□□□ 1.71
CLDN4-201ENST00000340958 DNMT1P26358 1616 aaKnown RBP25.7■■□□□ 1.7
CLDN4-201ENST00000340958 ABCC5O15440 1437 aa25.7■■□□□ 1.7
CLDN4-201ENST00000340958 ADGRL1O94910 1474 aa25.7■■□□□ 1.7
CLDN4-201ENST00000340958 EFCAB2Q5VUJ9 269 aa25.7■■□□□ 1.7
CLDN4-201ENST00000340958 RRP7BPQ9NSQ0 103 aa25.7■■□□□ 1.7
CLDN4-201ENST00000340958 DENND4BO75064 1496 aaPredicted RBP25.68■■□□□ 1.7
CLDN4-201ENST00000340958 HNRNPMP52272 730 aaKnown RBP eCLIP25.67■■□□□ 1.7
CLDN4-201ENST00000340958 HFM1A2PYH4 1435 aa25.66■■□□□ 1.7
CLDN4-201ENST00000340958 TSPY4P0CV99 314 aa25.65■■□□□ 1.7
CLDN4-201ENST00000340958 TSPY10P0CW01 314 aa25.65■■□□□ 1.7
CLDN4-201ENST00000340958 SCAPERQ9BY12 1400 aa25.64■■□□□ 1.7
CLDN4-201ENST00000340958 SAMD9LQ8IVG5 1584 aa25.63■■□□□ 1.69
CLDN4-201ENST00000340958 RSPH4AQ5TD94 716 aa25.62■■□□□ 1.69
CLDN4-201ENST00000340958 PLEKHH2Q8IVE3 1493 aa25.61■■□□□ 1.69
CLDN4-201ENST00000340958 NAIPQ13075 1403 aa25.6■■□□□ 1.69
CLDN4-201ENST00000340958 POGZQ7Z3K3 1410 aa25.6■■□□□ 1.69
CLDN4-201ENST00000340958 ROCK1Q13464 1354 aa25.6■■□□□ 1.69
CLDN4-201ENST00000340958 ABCC1P33527 1531 aa25.6■■□□□ 1.69
CLDN4-201ENST00000340958 ZMYM4Q5VZL5 1548 aa25.58■■□□□ 1.69
CLDN4-201ENST00000340958 SYCP2Q9BX26 1530 aa25.57■■□□□ 1.68
CLDN4-201ENST00000340958 DHX57Q6P158 1386 aaKnown RBP25.56■■□□□ 1.68
CLDN4-201ENST00000340958 ARHGEF12Q9NZN5 1544 aa25.56■■□□□ 1.68
CLDN4-201ENST00000340958 CCDC141Q6ZP82 1450 aa25.56■■□□□ 1.68
CLDN4-201ENST00000340958 ANKRD30AQ9BXX3 1397 aa25.56■■□□□ 1.68
CLDN4-201ENST00000340958 ARHGEF5Q12774 1597 aa25.55■■□□□ 1.68
CLDN4-201ENST00000340958 KIAA1107Q9UPP5 1409 aa25.55■■□□□ 1.68
CLDN4-201ENST00000340958 MBD5Q9P267 1494 aa25.55■■□□□ 1.68
CLDN4-201ENST00000340958 CROCC2H7BZ55 1655 aa25.54■■□□□ 1.68
CLDN4-201ENST00000340958 C9orf84Q5VXU9 1444 aa25.54■■□□□ 1.68
CLDN4-201ENST00000340958 ZNF518AQ6AHZ1 1483 aa25.53■■□□□ 1.68
CLDN4-201ENST00000340958 SHANK2Q9UPX8 1470 aa25.53■■□□□ 1.68
CLDN4-201ENST00000340958 ARHGEF40Q8TER5 1519 aa25.53■■□□□ 1.68
CLDN4-201ENST00000340958 GCC2Q8IWJ2 1684 aa25.52■■□□□ 1.68
CLDN4-201ENST00000340958 KDM5CP41229 1560 aa25.51■■□□□ 1.67
CLDN4-201ENST00000340958 ADGBQ8N7X0 1667 aa25.5■■□□□ 1.67
CLDN4-201ENST00000340958 AFAP1Q8N556 730 aa25.5■■□□□ 1.67
CLDN4-201ENST00000340958 NCOA1Q15788 1441 aa25.5■■□□□ 1.67
CLDN4-201ENST00000340958 TRAPPC8Q9Y2L5 1435 aa25.5■■□□□ 1.67
CLDN4-201ENST00000340958 TRIM52Q96A61 297 aa25.49■■□□□ 1.67
CLDN4-201ENST00000340958 ZFYVE16Q7Z3T8 1539 aa25.49■■□□□ 1.67
CLDN4-201ENST00000340958 YEATS2Q9ULM3 1422 aa25.48■■□□□ 1.67
CLDN4-201ENST00000340958 ADGRL2O95490 1459 aa25.48■■□□□ 1.67
CLDN4-201ENST00000340958 MAGI2Q86UL8 1455 aa25.47■■□□□ 1.67
CLDN4-201ENST00000340958 HECW2Q9P2P5 1572 aa25.46■■□□□ 1.67
CLDN4-201ENST00000340958 CLSPNQ9HAW4 1339 aa25.45■■□□□ 1.66
CLDN4-201ENST00000340958 ACIN1Q9UKV3 1341 aaKnown RBP25.44■■□□□ 1.66
CLDN4-201ENST00000340958 MYT1LQ9UL68 1186 aa25.42■■□□□ 1.66
CLDN4-201ENST00000340958 KIF15Q9NS87 1388 aa25.41■■□□□ 1.66
CLDN4-201ENST00000340958 KDM4FA0A1W2PPD8 638 aa25.4■■□□□ 1.66
CLDN4-201ENST00000340958 SIGLEC1Q9BZZ2 1709 aa25.4■■□□□ 1.66
CLDN4-201ENST00000340958 MLH3Q9UHC1 1453 aa25.39■■□□□ 1.66
CLDN4-201ENST00000340958 SPAG9O60271 1321 aaKnown RBP25.39■■□□□ 1.66
CLDN4-201ENST00000340958 KIDINS220Q9ULH0 1771 aa25.39■■□□□ 1.65
CLDN4-201ENST00000340958 ABCA6Q8N139 1617 aa25.38■■□□□ 1.65
CLDN4-201ENST00000340958 ANKRD50Q9ULJ7 1429 aa25.38■■□□□ 1.65
CLDN4-201ENST00000340958 DIP2CQ9Y2E4 1556 aa25.37■■□□□ 1.65
CLDN4-201ENST00000340958 MAST1Q9Y2H9 1570 aa25.37■■□□□ 1.65
CLDN4-201ENST00000340958 ATP10AO60312 1499 aa25.35■■□□□ 1.65
CLDN4-201ENST00000340958 INO80Q9ULG1 1556 aaPredicted RBP25.33■■□□□ 1.65
CLDN4-201ENST00000340958 ATP7AQ04656 1500 aa25.31■■□□□ 1.64
CLDN4-201ENST00000340958 BCORL1Q5H9F3 1711 aa25.31■■□□□ 1.64
CLDN4-201ENST00000340958 ARID4BQ4LE39 1312 aaPredicted RBP25.31■■□□□ 1.64
CLDN4-201ENST00000340958 MPHOSPH9Q99550 1183 aa25.28■■□□□ 1.64
CLDN4-201ENST00000340958 RTEL1-TNFRSF6BF6WH68 1400 aa25.28■■□□□ 1.64
CLDN4-201ENST00000340958 PLXNC1O60486 1568 aa25.27■■□□□ 1.64
CLDN4-201ENST00000340958 ADAMTSL3P82987 1691 aa25.27■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms