RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 PDE4AP27815 886 aa5.31□□□□□ -1.56
NEDD4-201ENST00000338963 HNRNPUL2Q1KMD3 747 aaKnown RBP5.31□□□□□ -1.56
NEDD4-201ENST00000338963 TICAM2Q86XR7 235 aa5.31□□□□□ -1.56
NEDD4-201ENST00000338963 MYH16Q9H6N6 1097 aa5.31□□□□□ -1.56
NEDD4-201ENST00000338963 YY1AP1Q9H869 796 aa5.3□□□□□ -1.56
NEDD4-201ENST00000338963 CREBRFQ8IUR6 639 aa5.3□□□□□ -1.56
NEDD4-201ENST00000338963 DHX37Q8IY37 1157 aaKnown RBP5.3□□□□□ -1.56
NEDD4-201ENST00000338963 ZCCHC6Q5VYS8 1495 aaKnown RBP5.3□□□□□ -1.56
NEDD4-201ENST00000338963 DYNC1I1O14576 645 aa5.3□□□□□ -1.56
NEDD4-201ENST00000338963 MSNP26038 577 aaKnown RBP5.3□□□□□ -1.56
NEDD4-201ENST00000338963 PLCD4Q9BRC7 762 aa5.3□□□□□ -1.56
NEDD4-201ENST00000338963 CCDC94Q9BW85 323 aaPredicted RBP5.3□□□□□ -1.56
NEDD4-201ENST00000338963 RRAGDQ9NQL2 400 aaPredicted RBP5.29□□□□□ -1.56
NEDD4-201ENST00000338963 ZBED9Q6R2W3 1325 aa5.29□□□□□ -1.56
NEDD4-201ENST00000338963 PLPPR3Q6T4P5 718 aa5.29□□□□□ -1.56
NEDD4-201ENST00000338963 B4GALNT3Q6L9W6 998 aa5.29□□□□□ -1.56
NEDD4-201ENST00000338963 RBM28Q9NW13 759 aaKnown RBP5.29□□□□□ -1.56
NEDD4-201ENST00000338963 CEP162Q5TB80 1403 aa5.29□□□□□ -1.56
NEDD4-201ENST00000338963 TAOK2Q9UL54 1235 aa5.28□□□□□ -1.56
NEDD4-201ENST00000338963 MCM5P33992 734 aa5.28□□□□□ -1.56
NEDD4-201ENST00000338963 HS1BP3Q53T59 392 aa5.28□□□□□ -1.56
NEDD4-201ENST00000338963 CC2D1BQ5T0F9 858 aaKnown RBP5.28□□□□□ -1.56
NEDD4-201ENST00000338963 DHX57Q6P158 1386 aaKnown RBP5.28□□□□□ -1.56
NEDD4-201ENST00000338963 OFD1O75665 1012 aa5.28□□□□□ -1.56
NEDD4-201ENST00000338963 CTR9Q6PD62 1173 aa5.28□□□□□ -1.56
NEDD4-201ENST00000338963 DDX10Q13206 875 aaKnown RBP5.27□□□□□ -1.57
NEDD4-201ENST00000338963 BACH2Q9BYV9 841 aa5.27□□□□□ -1.57
NEDD4-201ENST00000338963 KIAA1211Q6ZU35 1233 aa5.27□□□□□ -1.57
NEDD4-201ENST00000338963 SKOR2Q2VWA4 1001 aaPredicted RBP5.27□□□□□ -1.57
NEDD4-201ENST00000338963 HMGN5P82970 282 aaKnown RBP5.27□□□□□ -1.57
NEDD4-201ENST00000338963 CCDC173Q0VFZ6 552 aa5.27□□□□□ -1.57
NEDD4-201ENST00000338963 RALBP1Q15311 655 aa5.27□□□□□ -1.57
NEDD4-201ENST00000338963 PPP1R15AO75807 674 aaPredicted RBP5.27□□□□□ -1.57
NEDD4-201ENST00000338963 MMP14P50281 582 aa5.27□□□□□ -1.57
NEDD4-201ENST00000338963 GRIPAP1Q4V328 841 aa5.27□□□□□ -1.57
NEDD4-201ENST00000338963 HDAC5Q9UQL6 1122 aa5.27□□□□□ -1.57
NEDD4-201ENST00000338963 DDX11L8A8MPP1 907 aa5.26□□□□□ -1.57
NEDD4-201ENST00000338963 KIF3AQ9Y496 699 aa5.26□□□□□ -1.57
NEDD4-201ENST00000338963 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.26□□□□□ -1.57
NEDD4-201ENST00000338963 SECISBP2LQ93073 1101 aaKnown RBP5.26□□□□□ -1.57
NEDD4-201ENST00000338963 ZSCAN30Q86W11 494 aa5.26□□□□□ -1.57
NEDD4-201ENST00000338963 SMG6Q86US8 1419 aaKnown RBP5.25□□□□□ -1.57
NEDD4-201ENST00000338963 WWC1Q8IX03 1113 aa5.25□□□□□ -1.57
NEDD4-201ENST00000338963 RNF216Q9NWF9 866 aaPredicted RBP5.25□□□□□ -1.57
NEDD4-201ENST00000338963 PHLDB1Q86UU1 1377 aa5.25□□□□□ -1.57
NEDD4-201ENST00000338963 NINLQ9Y2I6 1382 aa5.25□□□□□ -1.57
NEDD4-201ENST00000338963 PDCL2Q8N4E4 241 aa5.25□□□□□ -1.57
NEDD4-201ENST00000338963 GEMIN8Q9NWZ8 242 aaKnown RBP5.25□□□□□ -1.57
NEDD4-201ENST00000338963 NUDCQ9Y266 331 aa5.25□□□□□ -1.57
NEDD4-201ENST00000338963 EFCC1Q9HA90 598 aa5.25□□□□□ -1.57
NEDD4-201ENST00000338963 TNNT3P45378 269 aaPredicted RBP5.25□□□□□ -1.57
NEDD4-201ENST00000338963 FAM13BQ9NYF5 915 aa5.25□□□□□ -1.57
NEDD4-201ENST00000338963 CALCOCO1Q9P1Z2 691 aa5.25□□□□□ -1.57
NEDD4-201ENST00000338963 IRX6P78412 446 aaPredicted RBP5.24□□□□□ -1.57
NEDD4-201ENST00000338963 UPF2Q9HAU5 1272 aaKnown RBP5.24□□□□□ -1.57
NEDD4-201ENST00000338963 GABPB1Q06547 395 aaPredicted RBP5.24□□□□□ -1.57
NEDD4-201ENST00000338963 SASS6Q6UVJ0 657 aa5.24□□□□□ -1.57
NEDD4-201ENST00000338963 RGS22Q8NE09 1264 aa5.24□□□□□ -1.57
NEDD4-201ENST00000338963 TMEM51Q9NW97 253 aa5.24□□□□□ -1.57
NEDD4-201ENST00000338963 GOLGA6L6A8MZA4 724 aa5.23□□□□□ -1.57
NEDD4-201ENST00000338963 GOLGA6L22H0YM25 854 aa5.23□□□□□ -1.57
NEDD4-201ENST00000338963 NCAPD3P42695 1498 aa5.23□□□□□ -1.57
NEDD4-201ENST00000338963 PATL2C9JE40 543 aaKnown RBP5.23□□□□□ -1.57
NEDD4-201ENST00000338963 NBPF1Q3BBV0 1214 aa5.23□□□□□ -1.57
NEDD4-201ENST00000338963 NBPF20Q3BBV1 942 aa5.23□□□□□ -1.57
NEDD4-201ENST00000338963 SSR1P43307 286 aaKnown RBP5.23□□□□□ -1.57
NEDD4-201ENST00000338963 CEP164Q9UPV0 1460 aa5.23□□□□□ -1.57
NEDD4-201ENST00000338963 PSMD1Q99460 953 aa5.23□□□□□ -1.57
NEDD4-201ENST00000338963 NPM1P06748 294 aaKnown RBP eCLIP5.23□□□□□ -1.57
NEDD4-201ENST00000338963 CNPY4Q8N129 248 aa5.23□□□□□ -1.57
NEDD4-201ENST00000338963 MNS1Q8NEH6 495 aa5.23□□□□□ -1.57
NEDD4-201ENST00000338963 ZHX1Q9UKY1 873 aaPredicted RBP5.23□□□□□ -1.57
NEDD4-201ENST00000338963 TPRNQ4KMQ1 711 aa5.22□□□□□ -1.57
NEDD4-201ENST00000338963 DCAF11Q8TEB1 546 aa5.22□□□□□ -1.57
NEDD4-201ENST00000338963 FRAT2O75474 233 aaPredicted RBP5.22□□□□□ -1.57
NEDD4-201ENST00000338963 FAM161AQ3B820 660 aa5.22□□□□□ -1.57
NEDD4-201ENST00000338963 TIGD1Q96MW7 591 aa5.22□□□□□ -1.57
NEDD4-201ENST00000338963 HSP90AB3PQ58FF7 597 aa5.21□□□□□ -1.57
NEDD4-201ENST00000338963 ZNF771Q7L3S4 317 aaPredicted RBP5.21□□□□□ -1.57
NEDD4-201ENST00000338963 GOLGA6L1Q8N7Z2 621 aa5.21□□□□□ -1.57
NEDD4-201ENST00000338963 MFAP1P55081 439 aaKnown RBP5.21□□□□□ -1.57
NEDD4-201ENST00000338963 PRIMPOLQ96LW4 560 aa5.21□□□□□ -1.57
NEDD4-201ENST00000338963 FEZ1Q99689 392 aa5.21□□□□□ -1.57
NEDD4-201ENST00000338963 FSD2A1L4K1 749 aa5.21□□□□□ -1.58
NEDD4-201ENST00000338963 RNF123Q5XPI4 1314 aa5.21□□□□□ -1.58
NEDD4-201ENST00000338963 XRCC6P12956 609 aaKnown RBP eCLIP5.21□□□□□ -1.58
NEDD4-201ENST00000338963 PDE3BQ13370 1112 aa5.21□□□□□ -1.58
NEDD4-201ENST00000338963 ZNF830Q96NB3 372 aaPredicted RBP5.2□□□□□ -1.58
NEDD4-201ENST00000338963 GRPEL1Q9HAV7 217 aa5.2□□□□□ -1.58
NEDD4-201ENST00000338963 BRMS1Q9HCU9 246 aa5.2□□□□□ -1.58
NEDD4-201ENST00000338963 CCDC144AA2RUR9 1427 aa5.2□□□□□ -1.58
NEDD4-201ENST00000338963 UQCRHLA0A096LP55 91 aa5.2□□□□□ -1.58
NEDD4-201ENST00000338963 UQCRHP07919 91 aa5.2□□□□□ -1.58
NEDD4-201ENST00000338963 CHAF1AQ13111 956 aaPredicted RBP5.2□□□□□ -1.58
NEDD4-201ENST00000338963 RBM25P49756 843 aaKnown RBP5.2□□□□□ -1.58
NEDD4-201ENST00000338963 MYCBPQ99417 103 aaPredicted RBP5.2□□□□□ -1.58
NEDD4-201ENST00000338963 GBP4Q96PP9 640 aa5.19□□□□□ -1.58
NEDD4-201ENST00000338963 KNSTRNQ9Y448 316 aa5.19□□□□□ -1.58
NEDD4-201ENST00000338963 LMOD3Q0VAK6 560 aa5.19□□□□□ -1.58
NEDD4-201ENST00000338963 CCDC39Q9UFE4 941 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms