RNA–Protein interactions for RNA: ENST00000338468.7

PRKN-201, Transcript of parkin RBR E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene PRKN, Length 1,276 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKN-201ENST00000338468 MYO5CQ9NQX4 1742 aa24.49■■□□□ 1.51
PRKN-201ENST00000338468 MADDQ8WXG6 1647 aa24.47■■□□□ 1.51
PRKN-201ENST00000338468 ARID4BQ4LE39 1312 aaPredicted RBP24.46■■□□□ 1.51
PRKN-201ENST00000338468 ARHGEF40Q8TER5 1519 aa24.45■■□□□ 1.5
PRKN-201ENST00000338468 RICTORQ6R327 1708 aa24.44■■□□□ 1.5
PRKN-201ENST00000338468 DENND4BO75064 1496 aaPredicted RBP24.44■■□□□ 1.5
PRKN-201ENST00000338468 EFCAB2Q5VUJ9 269 aa24.41■■□□□ 1.5
PRKN-201ENST00000338468 CDC42BPBQ9Y5S2 1711 aa24.41■■□□□ 1.5
PRKN-201ENST00000338468 LMTK3Q96Q04 1460 aa24.4■■□□□ 1.5
PRKN-201ENST00000338468 PREX2Q70Z35 1606 aa24.39■■□□□ 1.5
PRKN-201ENST00000338468 VPS8Q8N3P4 1428 aa24.39■■□□□ 1.5
PRKN-201ENST00000338468 ARHGAP5Q13017 1502 aa24.39■■□□□ 1.49
PRKN-201ENST00000338468 SCAPERQ9BY12 1400 aa24.38■■□□□ 1.49
PRKN-201ENST00000338468 CDC42BPAQ5VT25 1732 aa24.37■■□□□ 1.49
PRKN-201ENST00000338468 RIMS1Q86UR5 1692 aaKnown RBP24.37■■□□□ 1.49
PRKN-201ENST00000338468 POGZQ7Z3K3 1410 aa24.35■■□□□ 1.49
PRKN-201ENST00000338468 ZMYM4Q5VZL5 1548 aa24.35■■□□□ 1.49
PRKN-201ENST00000338468 MTUS2Q5JR59 1369 aa24.34■■□□□ 1.49
PRKN-201ENST00000338468 GPATCH8Q9UKJ3 1502 aaKnown RBP24.32■■□□□ 1.48
PRKN-201ENST00000338468 EHBP1L1Q8N3D4 1523 aa24.31■■□□□ 1.48
PRKN-201ENST00000338468 TIAM1Q13009 1591 aa24.29■■□□□ 1.48
PRKN-201ENST00000338468 ABCC1P33527 1531 aa24.28■■□□□ 1.48
PRKN-201ENST00000338468 ZFYVE16Q7Z3T8 1539 aa24.28■■□□□ 1.48
PRKN-201ENST00000338468 ARHGEF12Q9NZN5 1544 aa24.28■■□□□ 1.48
PRKN-201ENST00000338468 YEATS2Q9ULM3 1422 aa24.27■■□□□ 1.48
PRKN-201ENST00000338468 MAGI2Q86UL8 1455 aa24.26■■□□□ 1.47
PRKN-201ENST00000338468 KDM5CP41229 1560 aa24.25■■□□□ 1.47
PRKN-201ENST00000338468 ZNF518AQ6AHZ1 1483 aa24.24■■□□□ 1.47
PRKN-201ENST00000338468 SAMD9LQ8IVG5 1584 aa24.24■■□□□ 1.47
PRKN-201ENST00000338468 AFAP1Q8N556 730 aa24.23■■□□□ 1.47
PRKN-201ENST00000338468 CCNB3Q8WWL7 1395 aa24.23■■□□□ 1.47
PRKN-201ENST00000338468 ITSN2Q9NZM3 1697 aa24.22■■□□□ 1.47
PRKN-201ENST00000338468 TRAPPC8Q9Y2L5 1435 aa24.22■■□□□ 1.47
PRKN-201ENST00000338468 SIGLEC1Q9BZZ2 1709 aa24.21■■□□□ 1.47
PRKN-201ENST00000338468 HSPA2P54652 639 aa24.21■■□□□ 1.47
PRKN-201ENST00000338468 PLPPR3Q6T4P5 718 aa24.21■■□□□ 1.47
PRKN-201ENST00000338468 MAP3K1Q13233 1512 aa24.2■■□□□ 1.47
PRKN-201ENST00000338468 LRRC9Q6ZRR7 1453 aa24.2■■□□□ 1.47
PRKN-201ENST00000338468 NCOA2Q15596 1464 aa24.19■■□□□ 1.46
PRKN-201ENST00000338468 FER1L4A9Z1Z3 1794 aa24.19■■□□□ 1.46
PRKN-201ENST00000338468 CFDP1Q9UEE9 299 aaPredicted RBP24.18■■□□□ 1.46
PRKN-201ENST00000338468 ZNF777Q9ULD5 760 aaPredicted RBP24.18■■□□□ 1.46
PRKN-201ENST00000338468 SUPT6HQ7KZ85 1726 aaKnown RBP24.18■■□□□ 1.46
PRKN-201ENST00000338468 SYCP2Q9BX26 1530 aa24.16■■□□□ 1.46
PRKN-201ENST00000338468 KANK4Q5T7N3 995 aaPredicted RBP24.16■■□□□ 1.46
PRKN-201ENST00000338468 MLH3Q9UHC1 1453 aa24.14■■□□□ 1.46
PRKN-201ENST00000338468 MLECQ14165 292 aa24.14■■□□□ 1.45
PRKN-201ENST00000338468 KIAA1107Q9UPP5 1409 aa24.14■■□□□ 1.45
PRKN-201ENST00000338468 ATP10AO60312 1499 aa24.13■■□□□ 1.45
PRKN-201ENST00000338468 ZNF644Q9H582 1327 aaPredicted RBP24.12■■□□□ 1.45
PRKN-201ENST00000338468 HNRNPMP52272 730 aaKnown RBP eCLIP24.12■■□□□ 1.45
PRKN-201ENST00000338468 PLEKHH2Q8IVE3 1493 aa24.11■■□□□ 1.45
PRKN-201ENST00000338468 DIP2CQ9Y2E4 1556 aa24.11■■□□□ 1.45
PRKN-201ENST00000338468 C9orf84Q5VXU9 1444 aa24.1■■□□□ 1.45
PRKN-201ENST00000338468 ABCA6Q8N139 1617 aa24.1■■□□□ 1.45
PRKN-201ENST00000338468 KIDINS220Q9ULH0 1771 aa24.09■■□□□ 1.45
PRKN-201ENST00000338468 CERKQ8TCT0 537 aa24.08■■□□□ 1.45
PRKN-201ENST00000338468 MBD5Q9P267 1494 aa24.07■■□□□ 1.44
PRKN-201ENST00000338468 PREX1Q8TCU6 1659 aa24.06■■□□□ 1.44
PRKN-201ENST00000338468 REREQ9P2R6 1566 aa24.05■■□□□ 1.44
PRKN-201ENST00000338468 MYT1LQ9UL68 1186 aa24.03■■□□□ 1.44
PRKN-201ENST00000338468 CAMSAP2Q08AD1 1489 aa24.01■■□□□ 1.43
PRKN-201ENST00000338468 INO80Q9ULG1 1556 aaPredicted RBP24.01■■□□□ 1.43
PRKN-201ENST00000338468 SPAG9O60271 1321 aaKnown RBP24.01■■□□□ 1.43
PRKN-201ENST00000338468 ATP7AQ04656 1500 aa24■■□□□ 1.43
PRKN-201ENST00000338468 APLP2Q06481 763 aa23.98■■□□□ 1.43
PRKN-201ENST00000338468 AGLP35573 1532 aa23.96■■□□□ 1.43
PRKN-201ENST00000338468 MYOM3Q5VTT5 1437 aa23.96■■□□□ 1.43
PRKN-201ENST00000338468 UHRF1BP1Q6BDS2 1440 aa23.94■■□□□ 1.42
PRKN-201ENST00000338468 CEBPAP49715 358 aaPredicted RBP23.94■■□□□ 1.42
PRKN-201ENST00000338468 DMRT2Q9Y5R5 561 aa23.93■■□□□ 1.42
PRKN-201ENST00000338468 CCDC141Q6ZP82 1450 aa23.93■■□□□ 1.42
PRKN-201ENST00000338468 MIA2Q96PC5 1412 aa23.93■■□□□ 1.42
PRKN-201ENST00000338468 ARHGEF5Q12774 1597 aa23.92■■□□□ 1.42
PRKN-201ENST00000338468 RTEL1-TNFRSF6BF6WH68 1400 aa23.91■■□□□ 1.42
PRKN-201ENST00000338468 PLXNC1O60486 1568 aa23.91■■□□□ 1.42
PRKN-201ENST00000338468 STRCQ7RTU9 1775 aa23.9■■□□□ 1.42
PRKN-201ENST00000338468 A2MP01023 1474 aa23.87■■□□□ 1.41
PRKN-201ENST00000338468 RSPH4AQ5TD94 716 aa23.87■■□□□ 1.41
PRKN-201ENST00000338468 ADGBQ8N7X0 1667 aa23.86■■□□□ 1.41
PRKN-201ENST00000338468 SETD1BQ9UPS6 1966 aaKnown RBP23.85■■□□□ 1.41
PRKN-201ENST00000338468 C3P01024 1663 aa23.83■■□□□ 1.41
PRKN-201ENST00000338468 PTPN23Q9H3S7 1636 aa23.82■■□□□ 1.4
PRKN-201ENST00000338468 FGD6Q6ZV73 1430 aa23.82■■□□□ 1.4
PRKN-201ENST00000338468 DISP3Q9P2K9 1392 aa23.81■■□□□ 1.4
PRKN-201ENST00000338468 ESF1Q9H501 851 aaKnown RBP23.81■■□□□ 1.4
PRKN-201ENST00000338468 PTPRTO14522 1441 aa23.8■■□□□ 1.4
PRKN-201ENST00000338468 MAST1Q9Y2H9 1570 aa23.8■■□□□ 1.4
PRKN-201ENST00000338468 DHX29Q7Z478 1369 aaKnown RBP23.79■■□□□ 1.4
PRKN-201ENST00000338468 TCOF1Q13428 1488 aaKnown RBP23.79■■□□□ 1.4
PRKN-201ENST00000338468 TSPY4P0CV99 314 aa23.77■■□□□ 1.4
PRKN-201ENST00000338468 TSPY10P0CW01 314 aa23.77■■□□□ 1.4
PRKN-201ENST00000338468 ABCC5O15440 1437 aa23.76■■□□□ 1.39
PRKN-201ENST00000338468 CNTLNQ9NXG0 1405 aa23.76■■□□□ 1.39
PRKN-201ENST00000338468 CROCC2H7BZ55 1655 aa23.72■■□□□ 1.39
PRKN-201ENST00000338468 DNMT1P26358 1616 aaKnown RBP23.71■■□□□ 1.39
PRKN-201ENST00000338468 SPATA31D1Q6ZQQ2 1576 aa23.7■■□□□ 1.38
PRKN-201ENST00000338468 SHANK2Q9UPX8 1470 aa23.7■■□□□ 1.38
PRKN-201ENST00000338468 DAPK1P53355 1430 aa23.7■■□□□ 1.38
PRKN-201ENST00000338468 NCOA1Q15788 1441 aa23.7■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms