RNA–Protein interactions for RNA: ENST00000337571.8

CAPN3-202, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,271 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-202ENST00000337571 SCAPERQ9BY12 1400 aa17.3■□□□□ 0.36
CAPN3-202ENST00000337571 BCORL1Q5H9F3 1711 aa17.3■□□□□ 0.36
CAPN3-202ENST00000337571 PTPRMP28827 1452 aa17.3■□□□□ 0.36
CAPN3-202ENST00000337571 POGZQ7Z3K3 1410 aa17.3■□□□□ 0.36
CAPN3-202ENST00000337571 KIF14Q15058 1648 aa17.29■□□□□ 0.36
CAPN3-202ENST00000337571 MAGI2Q86UL8 1455 aa17.29■□□□□ 0.36
CAPN3-202ENST00000337571 TROQ12816 1431 aaPredicted RBP17.29■□□□□ 0.36
CAPN3-202ENST00000337571 ARHGEF40Q8TER5 1519 aa17.28■□□□□ 0.36
CAPN3-202ENST00000337571 ZMYM4Q5VZL5 1548 aa17.27■□□□□ 0.36
CAPN3-202ENST00000337571 ZFYVE16Q7Z3T8 1539 aa17.27■□□□□ 0.36
CAPN3-202ENST00000337571 MYT1LQ9UL68 1186 aa17.27■□□□□ 0.36
CAPN3-202ENST00000337571 ARHGAP5Q13017 1502 aa17.26■□□□□ 0.35
CAPN3-202ENST00000337571 MADDQ8WXG6 1647 aa17.25■□□□□ 0.35
CAPN3-202ENST00000337571 LRRIQ1Q96JM4 1722 aa17.25■□□□□ 0.35
CAPN3-202ENST00000337571 CASKIN1Q8WXD9 1431 aa17.25■□□□□ 0.35
CAPN3-202ENST00000337571 CCDC18Q5T9S5 1454 aa17.24■□□□□ 0.35
CAPN3-202ENST00000337571 MLECQ14165 292 aa17.24■□□□□ 0.35
CAPN3-202ENST00000337571 YEATS2Q9ULM3 1422 aa17.23■□□□□ 0.35
CAPN3-202ENST00000337571 RIMS1Q86UR5 1692 aaKnown RBP17.21■□□□□ 0.35
CAPN3-202ENST00000337571 ILDR1Q86SU0 546 aaPredicted RBP17.21■□□□□ 0.35
CAPN3-202ENST00000337571 PCF11O94913 1555 aaKnown RBP17.2■□□□□ 0.34
CAPN3-202ENST00000337571 ATP10AO60312 1499 aa17.2■□□□□ 0.34
CAPN3-202ENST00000337571 AFAP1Q8N556 730 aa17.2■□□□□ 0.34
CAPN3-202ENST00000337571 ZNF518AQ6AHZ1 1483 aa17.19■□□□□ 0.34
CAPN3-202ENST00000337571 PPP4R3CPQ6ZMV5 832 aa17.19■□□□□ 0.34
CAPN3-202ENST00000337571 MAPK8IP2Q13387 824 aaPredicted RBP17.18■□□□□ 0.34
CAPN3-202ENST00000337571 SCAF1Q9H7N4 1312 aaKnown RBP17.18■□□□□ 0.34
CAPN3-202ENST00000337571 FYCO1Q9BQS8 1478 aa17.18■□□□□ 0.34
CAPN3-202ENST00000337571 CDC42BPBQ9Y5S2 1711 aa17.17■□□□□ 0.34
CAPN3-202ENST00000337571 C9orf84Q5VXU9 1444 aa17.16■□□□□ 0.34
CAPN3-202ENST00000337571 POTEDQ86YR6 584 aa17.15■□□□□ 0.34
CAPN3-202ENST00000337571 ZNF777Q9ULD5 760 aaPredicted RBP17.14■□□□□ 0.33
CAPN3-202ENST00000337571 FER1L4A9Z1Z3 1794 aa17.14■□□□□ 0.33
CAPN3-202ENST00000337571 SIGLEC1Q9BZZ2 1709 aa17.13■□□□□ 0.33
CAPN3-202ENST00000337571 PREX2Q70Z35 1606 aa17.13■□□□□ 0.33
CAPN3-202ENST00000337571 ESF1Q9H501 851 aaKnown RBP17.11■□□□□ 0.33
CAPN3-202ENST00000337571 KDM5CP41229 1560 aa17.11■□□□□ 0.33
CAPN3-202ENST00000337571 LMTK3Q96Q04 1460 aa17.1■□□□□ 0.33
CAPN3-202ENST00000337571 CDC42BPAQ5VT25 1732 aa17.1■□□□□ 0.33
CAPN3-202ENST00000337571 MLH3Q9UHC1 1453 aa17.09■□□□□ 0.33
CAPN3-202ENST00000337571 ITSN2Q9NZM3 1697 aa17.07■□□□□ 0.32
CAPN3-202ENST00000337571 ABCC1P33527 1531 aa17.07■□□□□ 0.32
CAPN3-202ENST00000337571 ARHGEF12Q9NZN5 1544 aa17.07■□□□□ 0.32
CAPN3-202ENST00000337571 TRAPPC8Q9Y2L5 1435 aa17.07■□□□□ 0.32
CAPN3-202ENST00000337571 MTUS2Q5JR59 1369 aa17.07■□□□□ 0.32
CAPN3-202ENST00000337571 HSPA2P54652 639 aa17.07■□□□□ 0.32
CAPN3-202ENST00000337571 CFDP1Q9UEE9 299 aaPredicted RBP17.07■□□□□ 0.32
CAPN3-202ENST00000337571 CCNB3Q8WWL7 1395 aa17.05■□□□□ 0.32
CAPN3-202ENST00000337571 CEBPAP49715 358 aaPredicted RBP17.05■□□□□ 0.32
CAPN3-202ENST00000337571 HNRNPMP52272 730 aaKnown RBP eCLIP17.05■□□□□ 0.32
CAPN3-202ENST00000337571 DIP2CQ9Y2E4 1556 aa17.05■□□□□ 0.32
CAPN3-202ENST00000337571 GPATCH8Q9UKJ3 1502 aaKnown RBP17.05■□□□□ 0.32
CAPN3-202ENST00000337571 REREQ9P2R6 1566 aa17.03■□□□□ 0.32
CAPN3-202ENST00000337571 SPAG9O60271 1321 aaKnown RBP17.03■□□□□ 0.32
CAPN3-202ENST00000337571 ABCA6Q8N139 1617 aa17.03■□□□□ 0.32
CAPN3-202ENST00000337571 PLEKHH2Q8IVE3 1493 aa17■□□□□ 0.31
CAPN3-202ENST00000337571 KIDINS220Q9ULH0 1771 aa17■□□□□ 0.31
CAPN3-202ENST00000337571 CEP162Q5TB80 1403 aa17■□□□□ 0.31
CAPN3-202ENST00000337571 SAMD9LQ8IVG5 1584 aa17■□□□□ 0.31
CAPN3-202ENST00000337571 FBXO41Q8TF61 875 aa17■□□□□ 0.31
CAPN3-202ENST00000337571 PREX1Q8TCU6 1659 aa16.99■□□□□ 0.31
CAPN3-202ENST00000337571 AGLP35573 1532 aa16.99■□□□□ 0.31
CAPN3-202ENST00000337571 KIAA1107Q9UPP5 1409 aa16.98■□□□□ 0.31
CAPN3-202ENST00000337571 SYCP2Q9BX26 1530 aa16.98■□□□□ 0.31
CAPN3-202ENST00000337571 SETD1BQ9UPS6 1966 aaKnown RBP16.98■□□□□ 0.31
CAPN3-202ENST00000337571 DMRT2Q9Y5R5 561 aa16.95■□□□□ 0.3
CAPN3-202ENST00000337571 EHBP1L1Q8N3D4 1523 aa16.95■□□□□ 0.3
CAPN3-202ENST00000337571 UHRF1BP1Q6BDS2 1440 aa16.95■□□□□ 0.3
CAPN3-202ENST00000337571 CNTLNQ9NXG0 1405 aa16.94■□□□□ 0.3
CAPN3-202ENST00000337571 SUPT6HQ7KZ85 1726 aaKnown RBP16.93■□□□□ 0.3
CAPN3-202ENST00000337571 C3P01024 1663 aa16.93■□□□□ 0.3
CAPN3-202ENST00000337571 ATP7AQ04656 1500 aa16.92■□□□□ 0.3
CAPN3-202ENST00000337571 LOC105371045A0A1W2PR82 267 aa16.92■□□□□ 0.3
CAPN3-202ENST00000337571 ZNF644Q9H582 1327 aaPredicted RBP16.92■□□□□ 0.3
CAPN3-202ENST00000337571 GGT6Q6P531 493 aa16.9■□□□□ 0.3
CAPN3-202ENST00000337571 TIAM1Q13009 1591 aa16.89■□□□□ 0.3
CAPN3-202ENST00000337571 A2MP01023 1474 aa16.89■□□□□ 0.29
CAPN3-202ENST00000337571 RSPH4AQ5TD94 716 aa16.88■□□□□ 0.29
CAPN3-202ENST00000337571 ZMYM3Q14202 1370 aa16.88■□□□□ 0.29
CAPN3-202ENST00000337571 INO80Q9ULG1 1556 aaPredicted RBP16.87■□□□□ 0.29
CAPN3-202ENST00000337571 CERKQ8TCT0 537 aa16.87■□□□□ 0.29
CAPN3-202ENST00000337571 ADGBQ8N7X0 1667 aa16.86■□□□□ 0.29
CAPN3-202ENST00000337571 MROH2AA6NES4 1674 aa16.85■□□□□ 0.29
CAPN3-202ENST00000337571 NCOA2Q15596 1464 aa16.85■□□□□ 0.29
CAPN3-202ENST00000337571 RTEL1-TNFRSF6BF6WH68 1400 aa16.84■□□□□ 0.29
CAPN3-202ENST00000337571 MBD5Q9P267 1494 aa16.84■□□□□ 0.29
CAPN3-202ENST00000337571 TSPY4P0CV99 314 aa16.83■□□□□ 0.28
CAPN3-202ENST00000337571 TSPY10P0CW01 314 aa16.83■□□□□ 0.28
CAPN3-202ENST00000337571 CLTCQ00610 1675 aaKnown RBP16.83■□□□□ 0.28
CAPN3-202ENST00000337571 STRCQ7RTU9 1775 aa16.83■□□□□ 0.28
CAPN3-202ENST00000337571 PLXNC1O60486 1568 aa16.82■□□□□ 0.28
CAPN3-202ENST00000337571 NPATQ14207 1427 aa16.82■□□□□ 0.28
CAPN3-202ENST00000337571 VPS8Q8N3P4 1428 aa16.82■□□□□ 0.28
CAPN3-202ENST00000337571 DHX29Q7Z478 1369 aaKnown RBP16.8■□□□□ 0.28
CAPN3-202ENST00000337571 CAMSAP2Q08AD1 1489 aa16.8■□□□□ 0.28
CAPN3-202ENST00000337571 CCDC141Q6ZP82 1450 aa16.8■□□□□ 0.28
CAPN3-202ENST00000337571 KIF3BO15066 747 aa16.79■□□□□ 0.28
CAPN3-202ENST00000337571 APLP2Q06481 763 aa16.79■□□□□ 0.28
CAPN3-202ENST00000337571 LRRC9Q6ZRR7 1453 aa16.79■□□□□ 0.28
CAPN3-202ENST00000337571 PTPRTO14522 1441 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms