RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 PPRC1Q5VV67 1664 aaKnown RBP25.45■■□□□ 1.66
SHOX-201ENST00000334060 PLCH2O75038 1416 aa25.44■■□□□ 1.66
SHOX-201ENST00000334060 ARHGAP5Q13017 1502 aa25.43■■□□□ 1.66
SHOX-201ENST00000334060 CFDP1Q9UEE9 299 aaPredicted RBP25.43■■□□□ 1.66
SHOX-201ENST00000334060 SAMD9LQ8IVG5 1584 aa25.4■■□□□ 1.66
SHOX-201ENST00000334060 ITSN2Q9NZM3 1697 aa25.39■■□□□ 1.66
SHOX-201ENST00000334060 FAM50AQ14320 339 aaKnown RBP25.38■■□□□ 1.65
SHOX-201ENST00000334060 PTPN23Q9H3S7 1636 aa25.38■■□□□ 1.65
SHOX-201ENST00000334060 RRBP1Q9P2E9 1410 aaKnown RBP25.37■■□□□ 1.65
SHOX-201ENST00000334060 FANCAO15360 1455 aa25.37■■□□□ 1.65
SHOX-201ENST00000334060 CAMSAP2Q08AD1 1489 aa25.37■■□□□ 1.65
SHOX-201ENST00000334060 ARHGEF12Q9NZN5 1544 aa25.37■■□□□ 1.65
SHOX-201ENST00000334060 ITGAEP38570 1179 aa25.34■■□□□ 1.65
SHOX-201ENST00000334060 HNRNPMP52272 730 aaKnown RBP eCLIP25.33■■□□□ 1.64
SHOX-201ENST00000334060 MIA2Q96PC5 1412 aa25.32■■□□□ 1.64
SHOX-201ENST00000334060 SYCP2Q9BX26 1530 aa25.31■■□□□ 1.64
SHOX-201ENST00000334060 TCOF1Q13428 1488 aaKnown RBP25.3■■□□□ 1.64
SHOX-201ENST00000334060 EFCAB2Q5VUJ9 269 aa25.29■■□□□ 1.64
SHOX-201ENST00000334060 PTPRKQ15262 1439 aa25.29■■□□□ 1.64
SHOX-201ENST00000334060 AKNAQ7Z591 1439 aa25.28■■□□□ 1.64
SHOX-201ENST00000334060 ARAP3Q8WWN8 1544 aa25.28■■□□□ 1.64
SHOX-201ENST00000334060 ABCC1P33527 1531 aa25.27■■□□□ 1.64
SHOX-201ENST00000334060 COL17A1Q9UMD9 1497 aaPredicted RBP25.27■■□□□ 1.64
SHOX-201ENST00000334060 TRAPPC8Q9Y2L5 1435 aa25.26■■□□□ 1.63
SHOX-201ENST00000334060 MBD5Q9P267 1494 aa25.26■■□□□ 1.63
SHOX-201ENST00000334060 ADGRL1O94910 1474 aa25.25■■□□□ 1.63
SHOX-201ENST00000334060 SCAPERQ9BY12 1400 aa25.23■■□□□ 1.63
SHOX-201ENST00000334060 RAPGEF3O95398 923 aa25.23■■□□□ 1.63
SHOX-201ENST00000334060 AFAP1Q8N556 730 aa25.22■■□□□ 1.63
SHOX-201ENST00000334060 TRIM26Q12899 539 aaPredicted RBP25.21■■□□□ 1.63
SHOX-201ENST00000334060 ABCC5O15440 1437 aa25.21■■□□□ 1.63
SHOX-201ENST00000334060 PCGF6Q9BYE7 350 aa25.2■■□□□ 1.63
SHOX-201ENST00000334060 CHIC2Q9UKJ5 165 aa25.2■■□□□ 1.63
SHOX-201ENST00000334060 NEO1Q92859 1461 aa25.18■■□□□ 1.62
SHOX-201ENST00000334060 DAPK1P53355 1430 aa25.18■■□□□ 1.62
SHOX-201ENST00000334060 DNMT1P26358 1616 aaKnown RBP25.16■■□□□ 1.62
SHOX-201ENST00000334060 FRMPD1Q5SYB0 1578 aa25.16■■□□□ 1.62
SHOX-201ENST00000334060 TEX14Q8IWB6 1497 aa25.16■■□□□ 1.62
SHOX-201ENST00000334060 CFAP74Q9C0B2 1584 aa25.14■■□□□ 1.62
SHOX-201ENST00000334060 KIAA1107Q9UPP5 1409 aa25.14■■□□□ 1.61
SHOX-201ENST00000334060 POGZQ7Z3K3 1410 aa25.11■■□□□ 1.61
SHOX-201ENST00000334060 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.11■■□□□ 1.61
SHOX-201ENST00000334060 CCDC141Q6ZP82 1450 aa25.11■■□□□ 1.61
SHOX-201ENST00000334060 ARHGEF5Q12774 1597 aa25.11■■□□□ 1.61
SHOX-201ENST00000334060 CROCC2H7BZ55 1655 aa25.11■■□□□ 1.61
SHOX-201ENST00000334060 RICTORQ6R327 1708 aa25.1■■□□□ 1.61
SHOX-201ENST00000334060 DENND4BO75064 1496 aaPredicted RBP25.09■■□□□ 1.61
SHOX-201ENST00000334060 PLEKHH2Q8IVE3 1493 aa25.08■■□□□ 1.61
SHOX-201ENST00000334060 RRP7BPQ9NSQ0 103 aa25.07■■□□□ 1.6
SHOX-201ENST00000334060 C9orf84Q5VXU9 1444 aa25.06■■□□□ 1.6
SHOX-201ENST00000334060 KDM5CP41229 1560 aa25.03■■□□□ 1.6
SHOX-201ENST00000334060 ZNF518AQ6AHZ1 1483 aa25.03■■□□□ 1.6
SHOX-201ENST00000334060 ZFYVE16Q7Z3T8 1539 aa25.02■■□□□ 1.6
SHOX-201ENST00000334060 YEATS2Q9ULM3 1422 aa25.02■■□□□ 1.6
SHOX-201ENST00000334060 KDM6BO15054 1643 aa25.01■■□□□ 1.59
SHOX-201ENST00000334060 KIDINS220Q9ULH0 1771 aa25■■□□□ 1.59
SHOX-201ENST00000334060 SPAG9O60271 1321 aaKnown RBP25■■□□□ 1.59
SHOX-201ENST00000334060 INO80Q9ULG1 1556 aaPredicted RBP25■■□□□ 1.59
SHOX-201ENST00000334060 TSPY4P0CV99 314 aa24.98■■□□□ 1.59
SHOX-201ENST00000334060 TSPY10P0CW01 314 aa24.98■■□□□ 1.59
SHOX-201ENST00000334060 MYT1LQ9UL68 1186 aa24.98■■□□□ 1.59
SHOX-201ENST00000334060 ATP7AQ04656 1500 aa24.97■■□□□ 1.59
SHOX-201ENST00000334060 SHANK2Q9UPX8 1470 aa24.97■■□□□ 1.59
SHOX-201ENST00000334060 NCOA1Q15788 1441 aa24.96■■□□□ 1.59
SHOX-201ENST00000334060 ABCA6Q8N139 1617 aa24.95■■□□□ 1.58
SHOX-201ENST00000334060 HECW2Q9P2P5 1572 aa24.95■■□□□ 1.58
SHOX-201ENST00000334060 MAST1Q9Y2H9 1570 aa24.95■■□□□ 1.58
SHOX-201ENST00000334060 ADGBQ8N7X0 1667 aa24.93■■□□□ 1.58
SHOX-201ENST00000334060 ADGRL2O95490 1459 aa24.93■■□□□ 1.58
SHOX-201ENST00000334060 NAIPQ13075 1403 aa24.92■■□□□ 1.58
SHOX-201ENST00000334060 RSPH4AQ5TD94 716 aa24.92■■□□□ 1.58
SHOX-201ENST00000334060 SIGLEC1Q9BZZ2 1709 aa24.92■■□□□ 1.58
SHOX-201ENST00000334060 ZMYM4Q5VZL5 1548 aa24.91■■□□□ 1.58
SHOX-201ENST00000334060 MLH3Q9UHC1 1453 aa24.91■■□□□ 1.58
SHOX-201ENST00000334060 KIF15Q9NS87 1388 aa24.91■■□□□ 1.58
SHOX-201ENST00000334060 DIP2CQ9Y2E4 1556 aa24.9■■□□□ 1.58
SHOX-201ENST00000334060 ANKRD30AQ9BXX3 1397 aa24.88■■□□□ 1.57
SHOX-201ENST00000334060 HFM1A2PYH4 1435 aa24.87■■□□□ 1.57
SHOX-201ENST00000334060 PLXNC1O60486 1568 aa24.87■■□□□ 1.57
SHOX-201ENST00000334060 ROCK1Q13464 1354 aa24.87■■□□□ 1.57
SHOX-201ENST00000334060 RTEL1-TNFRSF6BF6WH68 1400 aa24.87■■□□□ 1.57
SHOX-201ENST00000334060 RAB3GAP2Q9H2M9 1393 aa24.84■■□□□ 1.57
SHOX-201ENST00000334060 GCC2Q8IWJ2 1684 aa24.84■■□□□ 1.57
SHOX-201ENST00000334060 ARHGEF40Q8TER5 1519 aa24.81■■□□□ 1.56
SHOX-201ENST00000334060 SETD5Q9C0A6 1442 aa24.8■■□□□ 1.56
SHOX-201ENST00000334060 ANKRD50Q9ULJ7 1429 aa24.79■■□□□ 1.56
SHOX-201ENST00000334060 A2MP01023 1474 aa24.78■■□□□ 1.56
SHOX-201ENST00000334060 DUOX2Q9NRD8 1548 aa24.76■■□□□ 1.55
SHOX-201ENST00000334060 MAGI2Q86UL8 1455 aa24.76■■□□□ 1.55
SHOX-201ENST00000334060 DHX29Q7Z478 1369 aaKnown RBP24.75■■□□□ 1.55
SHOX-201ENST00000334060 ATP10AO60312 1499 aa24.74■■□□□ 1.55
SHOX-201ENST00000334060 KIF3BO15066 747 aa24.71■■□□□ 1.55
SHOX-201ENST00000334060 ERBINQ96RT1 1412 aa24.69■■□□□ 1.54
SHOX-201ENST00000334060 MLECQ14165 292 aa24.69■■□□□ 1.54
SHOX-201ENST00000334060 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.69■■□□□ 1.54
SHOX-201ENST00000334060 MROH1Q8NDA8 1641 aa24.68■■□□□ 1.54
SHOX-201ENST00000334060 GGT6Q6P531 493 aa24.65■■□□□ 1.54
SHOX-201ENST00000334060 TRIM52Q96A61 297 aa24.63■■□□□ 1.53
SHOX-201ENST00000334060 REREQ9P2R6 1566 aa24.62■■□□□ 1.53
SHOX-201ENST00000334060 ARID4BQ4LE39 1312 aaPredicted RBP24.62■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms