RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 CDC42BPBQ9Y5S2 1711 aa25.71■■□□□ 1.71
HDDC2-201ENST00000318787 PREX2Q70Z35 1606 aa25.68■■□□□ 1.7
HDDC2-201ENST00000318787 EFCAB2Q5VUJ9 269 aa25.68■■□□□ 1.7
HDDC2-201ENST00000318787 CDC42BPAQ5VT25 1732 aa25.67■■□□□ 1.7
HDDC2-201ENST00000318787 SCAPERQ9BY12 1400 aa25.66■■□□□ 1.7
HDDC2-201ENST00000318787 ARHGEF40Q8TER5 1519 aa25.63■■□□□ 1.69
HDDC2-201ENST00000318787 MTUS2Q5JR59 1369 aa25.62■■□□□ 1.69
HDDC2-201ENST00000318787 POGZQ7Z3K3 1410 aa25.6■■□□□ 1.69
HDDC2-201ENST00000318787 ARID4BQ4LE39 1312 aaPredicted RBP25.6■■□□□ 1.69
HDDC2-201ENST00000318787 ZMYM4Q5VZL5 1548 aa25.59■■□□□ 1.69
HDDC2-201ENST00000318787 ZFYVE16Q7Z3T8 1539 aa25.59■■□□□ 1.69
HDDC2-201ENST00000318787 FOXD1Q16676 465 aa25.58■■□□□ 1.69
HDDC2-201ENST00000318787 MYT1LQ9UL68 1186 aa25.57■■□□□ 1.68
HDDC2-201ENST00000318787 ZNF777Q9ULD5 760 aaPredicted RBP25.56■■□□□ 1.68
HDDC2-201ENST00000318787 EHBP1L1Q8N3D4 1523 aa25.55■■□□□ 1.68
HDDC2-201ENST00000318787 YEATS2Q9ULM3 1422 aa25.55■■□□□ 1.68
HDDC2-201ENST00000318787 ITSN2Q9NZM3 1697 aa25.54■■□□□ 1.68
HDDC2-201ENST00000318787 VPS8Q8N3P4 1428 aa25.53■■□□□ 1.68
HDDC2-201ENST00000318787 ABCC1P33527 1531 aa25.52■■□□□ 1.68
HDDC2-201ENST00000318787 ZNF518AQ6AHZ1 1483 aa25.52■■□□□ 1.68
HDDC2-201ENST00000318787 CCNB3Q8WWL7 1395 aa25.51■■□□□ 1.67
HDDC2-201ENST00000318787 BCORL1Q5H9F3 1711 aa25.51■■□□□ 1.67
HDDC2-201ENST00000318787 TIAM1Q13009 1591 aa25.49■■□□□ 1.67
HDDC2-201ENST00000318787 AFAP1Q8N556 730 aa25.49■■□□□ 1.67
HDDC2-201ENST00000318787 MAGI2Q86UL8 1455 aa25.49■■□□□ 1.67
HDDC2-201ENST00000318787 SAMD9LQ8IVG5 1584 aa25.48■■□□□ 1.67
HDDC2-201ENST00000318787 GPATCH8Q9UKJ3 1502 aaKnown RBP25.48■■□□□ 1.67
HDDC2-201ENST00000318787 SIGLEC1Q9BZZ2 1709 aa25.48■■□□□ 1.67
HDDC2-201ENST00000318787 HECW2Q9P2P5 1572 aa25.48■■□□□ 1.67
HDDC2-201ENST00000318787 SUPT6HQ7KZ85 1726 aaKnown RBP25.48■■□□□ 1.67
HDDC2-201ENST00000318787 ADAMTSL3P82987 1691 aa25.46■■□□□ 1.67
HDDC2-201ENST00000318787 KDM5CP41229 1560 aa25.45■■□□□ 1.67
HDDC2-201ENST00000318787 ARHGEF12Q9NZN5 1544 aa25.45■■□□□ 1.66
HDDC2-201ENST00000318787 MADDQ8WXG6 1647 aa25.45■■□□□ 1.66
HDDC2-201ENST00000318787 CFDP1Q9UEE9 299 aaPredicted RBP25.44■■□□□ 1.66
HDDC2-201ENST00000318787 SYCP2Q9BX26 1530 aa25.44■■□□□ 1.66
HDDC2-201ENST00000318787 TRAPPC8Q9Y2L5 1435 aa25.43■■□□□ 1.66
HDDC2-201ENST00000318787 RIMS1Q86UR5 1692 aaKnown RBP25.42■■□□□ 1.66
HDDC2-201ENST00000318787 MLECQ14165 292 aa25.42■■□□□ 1.66
HDDC2-201ENST00000318787 ATP10AO60312 1499 aa25.39■■□□□ 1.66
HDDC2-201ENST00000318787 ABCA6Q8N139 1617 aa25.39■■□□□ 1.66
HDDC2-201ENST00000318787 C9orf84Q5VXU9 1444 aa25.39■■□□□ 1.65
HDDC2-201ENST00000318787 HNRNPMP52272 730 aaKnown RBP eCLIP25.38■■□□□ 1.65
HDDC2-201ENST00000318787 DIP2CQ9Y2E4 1556 aa25.38■■□□□ 1.65
HDDC2-201ENST00000318787 NCOA2Q15596 1464 aa25.38■■□□□ 1.65
HDDC2-201ENST00000318787 FER1L4A9Z1Z3 1794 aa25.37■■□□□ 1.65
HDDC2-201ENST00000318787 PLPPR3Q6T4P5 718 aa25.37■■□□□ 1.65
HDDC2-201ENST00000318787 KIDINS220Q9ULH0 1771 aa25.35■■□□□ 1.65
HDDC2-201ENST00000318787 PTPRMP28827 1452 aa25.34■■□□□ 1.65
HDDC2-201ENST00000318787 LRRC9Q6ZRR7 1453 aa25.34■■□□□ 1.65
HDDC2-201ENST00000318787 PLEKHH2Q8IVE3 1493 aa25.34■■□□□ 1.65
HDDC2-201ENST00000318787 MLH3Q9UHC1 1453 aa25.33■■□□□ 1.65
HDDC2-201ENST00000318787 APLP2Q06481 763 aa25.32■■□□□ 1.64
HDDC2-201ENST00000318787 ZNF644Q9H582 1327 aaPredicted RBP25.31■■□□□ 1.64
HDDC2-201ENST00000318787 SPAG9O60271 1321 aaKnown RBP25.29■■□□□ 1.64
HDDC2-201ENST00000318787 KANK4Q5T7N3 995 aaPredicted RBP25.28■■□□□ 1.64
HDDC2-201ENST00000318787 KIAA1107Q9UPP5 1409 aa25.27■■□□□ 1.64
HDDC2-201ENST00000318787 ATP7AQ04656 1500 aa25.27■■□□□ 1.64
HDDC2-201ENST00000318787 MAP3K1Q13233 1512 aa25.27■■□□□ 1.64
HDDC2-201ENST00000318787 CAMSAP2Q08AD1 1489 aa25.25■■□□□ 1.63
HDDC2-201ENST00000318787 INO80Q9ULG1 1556 aaPredicted RBP25.24■■□□□ 1.63
HDDC2-201ENST00000318787 REREQ9P2R6 1566 aa25.24■■□□□ 1.63
HDDC2-201ENST00000318787 ADGBQ8N7X0 1667 aa25.17■■□□□ 1.62
HDDC2-201ENST00000318787 MBD5Q9P267 1494 aa25.17■■□□□ 1.62
HDDC2-201ENST00000318787 CCDC141Q6ZP82 1450 aa25.15■■□□□ 1.62
HDDC2-201ENST00000318787 AGLP35573 1532 aa25.15■■□□□ 1.62
HDDC2-201ENST00000318787 ESF1Q9H501 851 aaKnown RBP25.15■■□□□ 1.62
HDDC2-201ENST00000318787 MYOM3Q5VTT5 1437 aa25.13■■□□□ 1.61
HDDC2-201ENST00000318787 A2MP01023 1474 aa25.12■■□□□ 1.61
HDDC2-201ENST00000318787 ARHGEF5Q12774 1597 aa25.09■■□□□ 1.61
HDDC2-201ENST00000318787 CEBPAP49715 358 aaPredicted RBP25.09■■□□□ 1.61
HDDC2-201ENST00000318787 PLXNC1O60486 1568 aa25.09■■□□□ 1.61
HDDC2-201ENST00000318787 C3P01024 1663 aa25.08■■□□□ 1.61
HDDC2-201ENST00000318787 PTPN23Q9H3S7 1636 aa25.05■■□□□ 1.6
HDDC2-201ENST00000318787 RTEL1-TNFRSF6BF6WH68 1400 aa25.05■■□□□ 1.6
HDDC2-201ENST00000318787 MIA2Q96PC5 1412 aa25.05■■□□□ 1.6
HDDC2-201ENST00000318787 TSPY4P0CV99 314 aa25.05■■□□□ 1.6
HDDC2-201ENST00000318787 TSPY10P0CW01 314 aa25.05■■□□□ 1.6
HDDC2-201ENST00000318787 CLTCQ00610 1675 aaKnown RBP25.04■■□□□ 1.6
HDDC2-201ENST00000318787 RSPH4AQ5TD94 716 aa25.04■■□□□ 1.6
HDDC2-201ENST00000318787 GGT6Q6P531 493 aa25.04■■□□□ 1.6
HDDC2-201ENST00000318787 LMTK3Q96Q04 1460 aa25.03■■□□□ 1.6
HDDC2-201ENST00000318787 PREX1Q8TCU6 1659 aa25.03■■□□□ 1.6
HDDC2-201ENST00000318787 HSPA2P54652 639 aa24.98■■□□□ 1.59
HDDC2-201ENST00000318787 MROH2AA6NES4 1674 aa24.98■■□□□ 1.59
HDDC2-201ENST00000318787 CROCC2H7BZ55 1655 aa24.98■■□□□ 1.59
HDDC2-201ENST00000318787 CNTLNQ9NXG0 1405 aa24.97■■□□□ 1.59
HDDC2-201ENST00000318787 DHX29Q7Z478 1369 aaKnown RBP24.96■■□□□ 1.59
HDDC2-201ENST00000318787 MAST1Q9Y2H9 1570 aa24.96■■□□□ 1.59
HDDC2-201ENST00000318787 FGD6Q6ZV73 1430 aa24.96■■□□□ 1.59
HDDC2-201ENST00000318787 KIF3BO15066 747 aa24.94■■□□□ 1.58
HDDC2-201ENST00000318787 SETD1BQ9UPS6 1966 aaKnown RBP24.92■■□□□ 1.58
HDDC2-201ENST00000318787 ILDR1Q86SU0 546 aaPredicted RBP24.92■■□□□ 1.58
HDDC2-201ENST00000318787 UHRF1BP1Q6BDS2 1440 aa24.91■■□□□ 1.58
HDDC2-201ENST00000318787 PPARGC1BQ86YN6 1023 aaKnown RBP24.91■■□□□ 1.58
HDDC2-201ENST00000318787 DNMT1P26358 1616 aaKnown RBP24.9■■□□□ 1.58
HDDC2-201ENST00000318787 ZMYM3Q14202 1370 aa24.88■■□□□ 1.57
HDDC2-201ENST00000318787 FAM50AQ14320 339 aaKnown RBP24.88■■□□□ 1.57
HDDC2-201ENST00000318787 TCOF1Q13428 1488 aaKnown RBP24.87■■□□□ 1.57
HDDC2-201ENST00000318787 DAPK1P53355 1430 aa24.87■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms