RNA–Protein interactions for RNA: ENST00000318266.9

PTPRA-202, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRA, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-202ENST00000318266 PCF11O94913 1555 aaKnown RBP13.19□□□□□ -0.3
PTPRA-202ENST00000318266 C11orf95C9JLR9 678 aaPredicted RBP13.18□□□□□ -0.3
PTPRA-202ENST00000318266 EIF4G2P78344 907 aaKnown RBP eCLIP13.18□□□□□ -0.3
PTPRA-202ENST00000318266 ERICH6BQ5W0A0 696 aa13.18□□□□□ -0.3
PTPRA-202ENST00000318266 MAP3K1Q13233 1512 aa13.18□□□□□ -0.3
PTPRA-202ENST00000318266 PTPRKQ15262 1439 aa13.17□□□□□ -0.3
PTPRA-202ENST00000318266 PRKRIP1Q9H875 184 aaPredicted RBP13.17□□□□□ -0.3
PTPRA-202ENST00000318266 RTN4Q9NQC3 1192 aaKnown RBP13.17□□□□□ -0.3
PTPRA-202ENST00000318266 GLI2P10070 1586 aa13.17□□□□□ -0.3
PTPRA-202ENST00000318266 FOXD1Q16676 465 aa13.17□□□□□ -0.3
PTPRA-202ENST00000318266 RTL5Q5HYW3 569 aaPredicted RBP13.17□□□□□ -0.3
PTPRA-202ENST00000318266 POLR3GLQ9BT43 218 aa13.17□□□□□ -0.3
PTPRA-202ENST00000318266 CCDC136Q96JN2 1154 aa13.16□□□□□ -0.3
PTPRA-202ENST00000318266 ANP32AP39687 249 aaKnown RBP13.15□□□□□ -0.3
PTPRA-202ENST00000318266 UACAQ9BZF9 1416 aa13.15□□□□□ -0.3
PTPRA-202ENST00000318266 KDM6BO15054 1643 aa13.15□□□□□ -0.3
PTPRA-202ENST00000318266 ERCC6L2Q5T890 1561 aa13.15□□□□□ -0.3
PTPRA-202ENST00000318266 MTUS2Q5JR59 1369 aa13.15□□□□□ -0.3
PTPRA-202ENST00000318266 NPM2Q86SE8 214 aaKnown RBP13.15□□□□□ -0.31
PTPRA-202ENST00000318266 FGD6Q6ZV73 1430 aa13.14□□□□□ -0.31
PTPRA-202ENST00000318266 AKNAQ7Z591 1439 aa13.14□□□□□ -0.31
PTPRA-202ENST00000318266 ZBED9Q6R2W3 1325 aa13.14□□□□□ -0.31
PTPRA-202ENST00000318266 ZBTB47Q9UFB7 747 aaPredicted RBP13.13□□□□□ -0.31
PTPRA-202ENST00000318266 IL27Q8NEV9 243 aa13.12□□□□□ -0.31
PTPRA-202ENST00000318266 CNTLNQ9NXG0 1405 aa13.12□□□□□ -0.31
PTPRA-202ENST00000318266 SALL2Q9Y467 1007 aaPredicted RBP13.11□□□□□ -0.31
PTPRA-202ENST00000318266 L3MBTL2Q969R5 705 aa13.11□□□□□ -0.31
PTPRA-202ENST00000318266 HFM1A2PYH4 1435 aa13.11□□□□□ -0.31
PTPRA-202ENST00000318266 IPO9Q96P70 1041 aaKnown RBP13.11□□□□□ -0.31
PTPRA-202ENST00000318266 CUL7Q14999 1698 aa13.1□□□□□ -0.31
PTPRA-202ENST00000318266 NAIPQ13075 1403 aa13.1□□□□□ -0.31
PTPRA-202ENST00000318266 CFAP43Q8NDM7 1665 aa13.09□□□□□ -0.31
PTPRA-202ENST00000318266 KDM5BQ9UGL1 1544 aa13.08□□□□□ -0.32
PTPRA-202ENST00000318266 LAS1LQ9Y4W2 734 aaKnown RBP13.08□□□□□ -0.32
PTPRA-202ENST00000318266 CCDC7Q96M83 1385 aa13.08□□□□□ -0.32
PTPRA-202ENST00000318266 PTPN23Q9H3S7 1636 aa13.07□□□□□ -0.32
PTPRA-202ENST00000318266 ARID3CA6NKF2 412 aa13.07□□□□□ -0.32
PTPRA-202ENST00000318266 FMN1Q68DA7 1419 aa13.06□□□□□ -0.32
PTPRA-202ENST00000318266 PRG4Q92954 1404 aaPredicted RBP13.06□□□□□ -0.32
PTPRA-202ENST00000318266 ADCY10Q96PN6 1610 aa13.06□□□□□ -0.32
PTPRA-202ENST00000318266 UHRF1BP1LA0JNW5 1464 aa13.05□□□□□ -0.32
PTPRA-202ENST00000318266 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.05□□□□□ -0.32
PTPRA-202ENST00000318266 NPM1P06748 294 aaKnown RBP eCLIP13.05□□□□□ -0.32
PTPRA-202ENST00000318266 CASKIN1Q8WXD9 1431 aa13.05□□□□□ -0.32
PTPRA-202ENST00000318266 FYCO1Q9BQS8 1478 aa13.05□□□□□ -0.32
PTPRA-202ENST00000318266 NBPF8Q3BBV2 869 aa13.04□□□□□ -0.32
PTPRA-202ENST00000318266 KIF7Q2M1P5 1343 aa13.04□□□□□ -0.32
PTPRA-202ENST00000318266 ZNF326Q5BKZ1 582 aaKnown RBP13.04□□□□□ -0.32
PTPRA-202ENST00000318266 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.04□□□□□ -0.32
PTPRA-202ENST00000318266 KIAA0586Q9BVV6 1533 aa13.04□□□□□ -0.32
PTPRA-202ENST00000318266 PLB1Q6P1J6 1458 aa13.03□□□□□ -0.32
PTPRA-202ENST00000318266 NCOA2Q15596 1464 aa13.03□□□□□ -0.32
PTPRA-202ENST00000318266 MPHOSPH9Q99550 1183 aa13.03□□□□□ -0.32
PTPRA-202ENST00000318266 NUDCQ9Y266 331 aa13.03□□□□□ -0.32
PTPRA-202ENST00000318266 NCOA1Q15788 1441 aa13.01□□□□□ -0.33
PTPRA-202ENST00000318266 TEX14Q8IWB6 1497 aa13.01□□□□□ -0.33
PTPRA-202ENST00000318266 NEFMP07197 916 aa13□□□□□ -0.33
PTPRA-202ENST00000318266 MYOM3Q5VTT5 1437 aa12.99□□□□□ -0.33
PTPRA-202ENST00000318266 SMG6Q86US8 1419 aaKnown RBP12.98□□□□□ -0.33
PTPRA-202ENST00000318266 DENND4BO75064 1496 aaPredicted RBP12.97□□□□□ -0.33
PTPRA-202ENST00000318266 PPRC1Q5VV67 1664 aaKnown RBP12.96□□□□□ -0.33
PTPRA-202ENST00000318266 MAP3K4Q9Y6R4 1608 aa12.96□□□□□ -0.34
PTPRA-202ENST00000318266 TMC1Q8TDI8 760 aa12.96□□□□□ -0.34
PTPRA-202ENST00000318266 JPH4Q96JJ6 628 aa12.96□□□□□ -0.34
PTPRA-202ENST00000318266 ABCC2Q92887 1545 aa12.95□□□□□ -0.34
PTPRA-202ENST00000318266 EXOC6Q8TAG9 804 aa12.95□□□□□ -0.34
PTPRA-202ENST00000318266 SKAP1Q86WV1 359 aa12.95□□□□□ -0.34
PTPRA-202ENST00000318266 SLC4A1APQ9BWU0 796 aaKnown RBP12.93□□□□□ -0.34
PTPRA-202ENST00000318266 CARMIL2Q6F5E8 1435 aa12.93□□□□□ -0.34
PTPRA-202ENST00000318266 FAM69CQ0P6D2 419 aa12.92□□□□□ -0.34
PTPRA-202ENST00000318266 PDE4AP27815 886 aa12.91□□□□□ -0.34
PTPRA-202ENST00000318266 EFCAB5A4FU69 1503 aa12.91□□□□□ -0.34
PTPRA-202ENST00000318266 RNF123Q5XPI4 1314 aa12.91□□□□□ -0.34
PTPRA-202ENST00000318266 BRPF3Q9ULD4 1205 aa12.89□□□□□ -0.35
PTPRA-202ENST00000318266 ADGRL1O94910 1474 aa12.89□□□□□ -0.35
PTPRA-202ENST00000318266 KDM4FA0A1W2PPD8 638 aa12.89□□□□□ -0.35
PTPRA-202ENST00000318266 PNISRQ8TF01 805 aaKnown RBP12.89□□□□□ -0.35
PTPRA-202ENST00000318266 SLC4A3P48751 1232 aa12.88□□□□□ -0.35
PTPRA-202ENST00000318266 DHX29Q7Z478 1369 aaKnown RBP12.88□□□□□ -0.35
PTPRA-202ENST00000318266 RRP1P56182 461 aaKnown RBP12.88□□□□□ -0.35
PTPRA-202ENST00000318266 PLIN1O60240 522 aa12.86□□□□□ -0.35
PTPRA-202ENST00000318266 SPATA31E1Q6ZUB1 1445 aa12.86□□□□□ -0.35
PTPRA-202ENST00000318266 ANKRD30BQ9BXX2 1392 aa12.86□□□□□ -0.35
PTPRA-202ENST00000318266 TCERG1O14776 1098 aaKnown RBP12.85□□□□□ -0.35
PTPRA-202ENST00000318266 RCAN3Q9UKA8 241 aa12.85□□□□□ -0.35
PTPRA-202ENST00000318266 HECW2Q9P2P5 1572 aa12.85□□□□□ -0.35
PTPRA-202ENST00000318266 EIF5BO60841 1220 aaKnown RBP12.85□□□□□ -0.35
PTPRA-202ENST00000318266 TSPOAP1O95153 1857 aa12.85□□□□□ -0.35
PTPRA-202ENST00000318266 SUPT6HQ7KZ85 1726 aaKnown RBP12.85□□□□□ -0.35
PTPRA-202ENST00000318266 USP47Q96K76 1375 aa12.85□□□□□ -0.35
PTPRA-202ENST00000318266 BACH2Q9BYV9 841 aa12.84□□□□□ -0.35
PTPRA-202ENST00000318266 MAGI3Q5TCQ9 1506 aa12.84□□□□□ -0.35
PTPRA-202ENST00000318266 ZNF644Q9H582 1327 aaPredicted RBP12.84□□□□□ -0.35
PTPRA-202ENST00000318266 PTPRGP23470 1445 aa12.84□□□□□ -0.35
PTPRA-202ENST00000318266 IQGAP2Q13576 1575 aa12.84□□□□□ -0.35
PTPRA-202ENST00000318266 HECW1Q76N89 1606 aa12.84□□□□□ -0.35
PTPRA-202ENST00000318266 RPRD2Q5VT52 1461 aaKnown RBP12.83□□□□□ -0.36
PTPRA-202ENST00000318266 LRRIQ1Q96JM4 1722 aa12.83□□□□□ -0.36
PTPRA-202ENST00000318266 UGGT2Q9NYU1 1516 aa12.83□□□□□ -0.36
PTPRA-202ENST00000318266 ILDR1Q86SU0 546 aaPredicted RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms