RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 SRPK2P78362 688 aaKnown RBP12.5□□□□□ -0.41
PTPRE-202ENST00000306042 PRXQ9BXM0 1461 aa12.5□□□□□ -0.41
PTPRE-202ENST00000306042 NPM2Q86SE8 214 aaKnown RBP12.5□□□□□ -0.41
PTPRE-202ENST00000306042 UACAQ9BZF9 1416 aa12.5□□□□□ -0.41
PTPRE-202ENST00000306042 KNSTRNQ9Y448 316 aa12.49□□□□□ -0.41
PTPRE-202ENST00000306042 PPM1GO15355 546 aaPredicted RBP12.49□□□□□ -0.41
PTPRE-202ENST00000306042 CASKIN1Q8WXD9 1431 aa12.49□□□□□ -0.41
PTPRE-202ENST00000306042 MYT1Q01538 1121 aa12.48□□□□□ -0.41
PTPRE-202ENST00000306042 ARHGAP5Q13017 1502 aa12.48□□□□□ -0.41
PTPRE-202ENST00000306042 AFAP1Q8N556 730 aa12.48□□□□□ -0.41
PTPRE-202ENST00000306042 NUTM2DQ5VT03 806 aaPredicted RBP12.48□□□□□ -0.41
PTPRE-202ENST00000306042 KIF21BO75037 1637 aa12.48□□□□□ -0.41
PTPRE-202ENST00000306042 MYOM3Q5VTT5 1437 aa12.47□□□□□ -0.41
PTPRE-202ENST00000306042 EFCAB5A4FU69 1503 aa12.47□□□□□ -0.41
PTPRE-202ENST00000306042 ZNF644Q9H582 1327 aaPredicted RBP12.46□□□□□ -0.41
PTPRE-202ENST00000306042 IQGAP2Q13576 1575 aa12.46□□□□□ -0.42
PTPRE-202ENST00000306042 FAM9BQ8IZU0 186 aa12.46□□□□□ -0.42
PTPRE-202ENST00000306042 CFAP53Q96M91 514 aa12.45□□□□□ -0.42
PTPRE-202ENST00000306042 RAB3GAP2Q9H2M9 1393 aa12.45□□□□□ -0.42
PTPRE-202ENST00000306042 BCL11AQ9H165 835 aa12.45□□□□□ -0.42
PTPRE-202ENST00000306042 TMF1P82094 1093 aa12.44□□□□□ -0.42
PTPRE-202ENST00000306042 CUL7Q14999 1698 aa12.44□□□□□ -0.42
PTPRE-202ENST00000306042 SALL2Q9Y467 1007 aaPredicted RBP12.43□□□□□ -0.42
PTPRE-202ENST00000306042 DAXXQ9UER7 740 aaPredicted RBP12.43□□□□□ -0.42
PTPRE-202ENST00000306042 RAPGEF3O95398 923 aa12.42□□□□□ -0.42
PTPRE-202ENST00000306042 FYCO1Q9BQS8 1478 aa12.42□□□□□ -0.42
PTPRE-202ENST00000306042 MRS2Q9HD23 443 aa12.41□□□□□ -0.42
PTPRE-202ENST00000306042 KIF15Q9NS87 1388 aa12.41□□□□□ -0.42
PTPRE-202ENST00000306042 TIMELESSQ9UNS1 1208 aa12.41□□□□□ -0.42
PTPRE-202ENST00000306042 PAK3O75914 559 aaPredicted RBP12.4□□□□□ -0.42
PTPRE-202ENST00000306042 SOX12O15370 315 aa12.4□□□□□ -0.42
PTPRE-202ENST00000306042 TROQ12816 1431 aaPredicted RBP12.4□□□□□ -0.42
PTPRE-202ENST00000306042 VGFO15240 615 aaPredicted RBP12.39□□□□□ -0.43
PTPRE-202ENST00000306042 ARAP1Q96P48 1450 aa12.39□□□□□ -0.43
PTPRE-202ENST00000306042 NCOA2Q15596 1464 aa12.38□□□□□ -0.43
PTPRE-202ENST00000306042 CCDC144AA2RUR9 1427 aa12.38□□□□□ -0.43
PTPRE-202ENST00000306042 FGD6Q6ZV73 1430 aa12.38□□□□□ -0.43
PTPRE-202ENST00000306042 CD109Q6YHK3 1445 aa12.38□□□□□ -0.43
PTPRE-202ENST00000306042 HDGFL2Q7Z4V5 671 aaPredicted RBP12.38□□□□□ -0.43
PTPRE-202ENST00000306042 LRRC9Q6ZRR7 1453 aa12.37□□□□□ -0.43
PTPRE-202ENST00000306042 TNNT2P45379 298 aaPredicted RBP12.37□□□□□ -0.43
PTPRE-202ENST00000306042 KIF21AQ7Z4S6 1674 aa12.37□□□□□ -0.43
PTPRE-202ENST00000306042 SCAPERQ9BY12 1400 aa12.37□□□□□ -0.43
PTPRE-202ENST00000306042 HECW1Q76N89 1606 aa12.37□□□□□ -0.43
PTPRE-202ENST00000306042 ROCK2O75116 1388 aaKnown RBP12.36□□□□□ -0.43
PTPRE-202ENST00000306042 POGZQ7Z3K3 1410 aa12.36□□□□□ -0.43
PTPRE-202ENST00000306042 PLEKHH2Q8IVE3 1493 aa12.36□□□□□ -0.43
PTPRE-202ENST00000306042 HNRNPUQ00839 825 aaKnown RBP eCLIP12.36□□□□□ -0.43
PTPRE-202ENST00000306042 NUDCQ9Y266 331 aa12.36□□□□□ -0.43
PTPRE-202ENST00000306042 PLB1Q6P1J6 1458 aa12.35□□□□□ -0.43
PTPRE-202ENST00000306042 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.35□□□□□ -0.43
PTPRE-202ENST00000306042 BIVM-ERCC5R4GMW8 1640 aa12.34□□□□□ -0.43
PTPRE-202ENST00000306042 DCAF8L1A6NGE4 600 aa12.34□□□□□ -0.43
PTPRE-202ENST00000306042 EIF3AQ14152 1382 aaKnown RBP12.34□□□□□ -0.43
PTPRE-202ENST00000306042 NGDNQ8NEJ9 315 aaKnown RBP12.34□□□□□ -0.43
PTPRE-202ENST00000306042 WDR62O43379 1518 aa12.33□□□□□ -0.44
PTPRE-202ENST00000306042 PHLDB1Q86UU1 1377 aa12.33□□□□□ -0.44
PTPRE-202ENST00000306042 NUTM2FA1L443 756 aa12.32□□□□□ -0.44
PTPRE-202ENST00000306042 ANKRD50Q9ULJ7 1429 aa12.32□□□□□ -0.44
PTPRE-202ENST00000306042 ARXQ96QS3 562 aa12.31□□□□□ -0.44
PTPRE-202ENST00000306042 TRAK1Q9UPV9 953 aa12.31□□□□□ -0.44
PTPRE-202ENST00000306042 CCDC9Q9Y3X0 531 aaKnown RBP12.31□□□□□ -0.44
PTPRE-202ENST00000306042 MAPK8IP3Q9UPT6 1336 aa12.31□□□□□ -0.44
PTPRE-202ENST00000306042 L3MBTL2Q969R5 705 aa12.3□□□□□ -0.44
PTPRE-202ENST00000306042 CSB-PGBD3P0DP91 1061 aa12.3□□□□□ -0.44
PTPRE-202ENST00000306042 EHBP1L1Q8N3D4 1523 aa12.3□□□□□ -0.44
PTPRE-202ENST00000306042 EPRSP07814 1512 aaKnown RBP12.3□□□□□ -0.44
PTPRE-202ENST00000306042 CC2D1BQ5T0F9 858 aaKnown RBP12.3□□□□□ -0.44
PTPRE-202ENST00000306042 CDK13Q14004 1512 aaKnown RBP12.29□□□□□ -0.44
PTPRE-202ENST00000306042 U2SURPO15042 1029 aaKnown RBP12.29□□□□□ -0.44
PTPRE-202ENST00000306042 MORC1Q86VD1 984 aa12.29□□□□□ -0.44
PTPRE-202ENST00000306042 THEMISQ8N1K5 641 aaPredicted RBP12.28□□□□□ -0.44
PTPRE-202ENST00000306042 TERF2IPQ9NYB0 399 aa12.28□□□□□ -0.44
PTPRE-202ENST00000306042 EIF4G3O43432 1585 aaKnown RBP12.26□□□□□ -0.45
PTPRE-202ENST00000306042 TXNDC2Q86VQ3 553 aa12.26□□□□□ -0.45
PTPRE-202ENST00000306042 HSPA5P11021 654 aaKnown RBP12.26□□□□□ -0.45
PTPRE-202ENST00000306042 C9orf84Q5VXU9 1444 aa12.25□□□□□ -0.45
PTPRE-202ENST00000306042 MIA2Q96PC5 1412 aa12.25□□□□□ -0.45
PTPRE-202ENST00000306042 ARHGEF11O15085 1522 aa12.25□□□□□ -0.45
PTPRE-202ENST00000306042 NEUROD2Q15784 382 aa12.24□□□□□ -0.45
PTPRE-202ENST00000306042 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.24□□□□□ -0.45
PTPRE-202ENST00000306042 PNNQ9H307 717 aaKnown RBP12.24□□□□□ -0.45
PTPRE-202ENST00000306042 ATF3P18847 181 aa12.24□□□□□ -0.45
PTPRE-202ENST00000306042 ADGRL1O94910 1474 aa12.24□□□□□ -0.45
PTPRE-202ENST00000306042 NPHP1O15259 732 aa12.21□□□□□ -0.45
PTPRE-202ENST00000306042 LAS1LQ9Y4W2 734 aaKnown RBP12.21□□□□□ -0.45
PTPRE-202ENST00000306042 DMRT2Q9Y5R5 561 aa12.21□□□□□ -0.45
PTPRE-202ENST00000306042 ASXL2Q76L83 1435 aa12.21□□□□□ -0.46
PTPRE-202ENST00000306042 MINK1Q8N4C8 1332 aaPredicted RBP12.21□□□□□ -0.46
PTPRE-202ENST00000306042 ANKLE2Q86XL3 938 aa12.2□□□□□ -0.46
PTPRE-202ENST00000306042 ADAMTS12P58397 1594 aa12.2□□□□□ -0.46
PTPRE-202ENST00000306042 DENND4BO75064 1496 aaPredicted RBP12.2□□□□□ -0.46
PTPRE-202ENST00000306042 SLC52A1Q9NWF4 448 aa12.2□□□□□ -0.46
PTPRE-202ENST00000306042 KIF14Q15058 1648 aa12.19□□□□□ -0.46
PTPRE-202ENST00000306042 STAC3Q96MF2 364 aa12.19□□□□□ -0.46
PTPRE-202ENST00000306042 PROSER2Q86WR7 435 aaPredicted RBP12.19□□□□□ -0.46
PTPRE-202ENST00000306042 TEX14Q8IWB6 1497 aa12.19□□□□□ -0.46
PTPRE-202ENST00000306042 EVC2Q86UK5 1308 aa12.19□□□□□ -0.46
PTPRE-202ENST00000306042 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.18□□□□□ -0.46
PTPRE-202ENST00000306042 TIAM1Q13009 1591 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms