RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 RRBP1Q9P2E9 1410 aaKnown RBP15.24■□□□□ 0.03
LSM3-201ENST00000306024 SUPT6HQ7KZ85 1726 aaKnown RBP15.23■□□□□ 0.03
LSM3-201ENST00000306024 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.21■□□□□ 0.031e-8■■■□□ 17.2
LSM3-201ENST00000306024 TRHP20396 242 aaPredicted RBP15.2■□□□□ 0.02
LSM3-201ENST00000306024 SETD5Q9C0A6 1442 aa15.2■□□□□ 0.02
LSM3-201ENST00000306024 CFAP43Q8NDM7 1665 aa15.18■□□□□ 0.02
LSM3-201ENST00000306024 CLASP1Q7Z460 1538 aa15.18■□□□□ 0.02
LSM3-201ENST00000306024 RAB3GAP2Q9H2M9 1393 aa15.18■□□□□ 0.02
LSM3-201ENST00000306024 ARHGEF11O15085 1522 aa15.18■□□□□ 0.02
LSM3-201ENST00000306024 FAM69CQ0P6D2 419 aa15.17■□□□□ 0.02
LSM3-201ENST00000306024 ABCC2Q92887 1545 aa15.17■□□□□ 0.02
LSM3-201ENST00000306024 MIA2Q96PC5 1412 aa15.15■□□□□ 0.02
LSM3-201ENST00000306024 RSPH4AQ5TD94 716 aa15.15■□□□□ 0.02
LSM3-201ENST00000306024 SLC4A1APQ9BWU0 796 aaKnown RBP15.15■□□□□ 0.02
LSM3-201ENST00000306024 ABCA8O94911 1581 aa15.14■□□□□ 0.01
LSM3-201ENST00000306024 RTL5Q5HYW3 569 aaPredicted RBP15.14■□□□□ 0.01
LSM3-201ENST00000306024 ARHGAP5Q13017 1502 aa15.14■□□□□ 0.01
LSM3-201ENST00000306024 ANKRD30AQ9BXX3 1397 aa15.13■□□□□ 0.01
LSM3-201ENST00000306024 KIF14Q15058 1648 aa15.12■□□□□ 0.01
LSM3-201ENST00000306024 MAGI3Q5TCQ9 1506 aa15.12■□□□□ 0.01
LSM3-201ENST00000306024 SPAG9O60271 1321 aaKnown RBP15.11■□□□□ 0.01
LSM3-201ENST00000306024 DEKP35659 375 aaKnown RBP15.11■□□□□ 0.01
LSM3-201ENST00000306024 ASXL2Q76L83 1435 aa15.1■□□□□ 0.01
LSM3-201ENST00000306024 NBR1Q14596 966 aa15.1■□□□□ 0.01
LSM3-201ENST00000306024 GPATCH8Q9UKJ3 1502 aaKnown RBP15.09■□□□□ 0.01
LSM3-201ENST00000306024 SHROOM2Q13796 1616 aa15.08■□□□□ 0
LSM3-201ENST00000306024 AFAP1Q8N556 730 aa15.08■□□□□ 0
LSM3-201ENST00000306024 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.08■□□□□ 0
LSM3-201ENST00000306024 PTPN23Q9H3S7 1636 aa15.07■□□□□ 0
LSM3-201ENST00000306024 WDR7Q9Y4E6 1490 aa15.05■□□□□ 0
LSM3-201ENST00000306024 UHRF1BP1LA0JNW5 1464 aa15.04■□□□□ -0
LSM3-201ENST00000306024 SIN3AQ96ST3 1273 aa15.04■□□□□ -0
LSM3-201ENST00000306024 CAMSAP2Q08AD1 1489 aa15.04■□□□□ -0
LSM3-201ENST00000306024 CD109Q6YHK3 1445 aa15.03■□□□□ -0
LSM3-201ENST00000306024 ZNF326Q5BKZ1 582 aaKnown RBP15.03■□□□□ -0
LSM3-201ENST00000306024 DAPK1P53355 1430 aa15.03■□□□□ -0
LSM3-201ENST00000306024 TONSLQ96HA7 1378 aa15.03■□□□□ -0
LSM3-201ENST00000306024 KDM5BQ9UGL1 1544 aa15.03■□□□□ -0
LSM3-201ENST00000306024 FOXD1Q16676 465 aa15.02□□□□□ -0.01
LSM3-201ENST00000306024 NUP155O75694 1391 aa15.01□□□□□ -0.01
LSM3-201ENST00000306024 KIF15Q9NS87 1388 aa15.01□□□□□ -0.01
LSM3-201ENST00000306024 MPHOSPH9Q99550 1183 aa15□□□□□ -0.01
LSM3-201ENST00000306024 ESF1Q9H501 851 aaKnown RBP15□□□□□ -0.01
LSM3-201ENST00000306024 DHX57Q6P158 1386 aaKnown RBP15□□□□□ -0.01
LSM3-201ENST00000306024 ANO8Q9HCE9 1232 aaPredicted RBP15□□□□□ -0.01
LSM3-201ENST00000306024 ABCC5O15440 1437 aa15□□□□□ -0.01
LSM3-201ENST00000306024 KIF3BO15066 747 aa15□□□□□ -0.01
LSM3-201ENST00000306024 DDX10Q13206 875 aaKnown RBP14.99□□□□□ -0.01
LSM3-201ENST00000306024 C9orf84Q5VXU9 1444 aa14.99□□□□□ -0.01
LSM3-201ENST00000306024 PLEKHH2Q8IVE3 1493 aa14.99□□□□□ -0.01
LSM3-201ENST00000306024 SCAPERQ9BY12 1400 aa14.99□□□□□ -0.01
LSM3-201ENST00000306024 GGT6Q6P531 493 aa14.99□□□□□ -0.01
LSM3-201ENST00000306024 IRX6P78412 446 aaPredicted RBP14.98□□□□□ -0.01
LSM3-201ENST00000306024 PLCH2O75038 1416 aa14.98□□□□□ -0.01
LSM3-201ENST00000306024 PKD2Q13563 968 aa14.98□□□□□ -0.01
LSM3-201ENST00000306024 PTPRKQ15262 1439 aa14.97□□□□□ -0.01
LSM3-201ENST00000306024 LRRIQ1Q96JM4 1722 aa14.97□□□□□ -0.01
LSM3-201ENST00000306024 RAPGEF3O95398 923 aa14.97□□□□□ -0.01
LSM3-201ENST00000306024 HFM1A2PYH4 1435 aa14.97□□□□□ -0.01
LSM3-201ENST00000306024 ARID4BQ4LE39 1312 aaPredicted RBP14.97□□□□□ -0.01
LSM3-201ENST00000306024 ZCCHC11Q5TAX3 1644 aaKnown RBP14.96□□□□□ -0.01
LSM3-201ENST00000306024 FANCAO15360 1455 aa14.96□□□□□ -0.01
LSM3-201ENST00000306024 ANKRD50Q9ULJ7 1429 aa14.96□□□□□ -0.01
LSM3-201ENST00000306024 ITSN2Q9NZM3 1697 aa14.96□□□□□ -0.01
LSM3-201ENST00000306024 ANP32CO43423 234 aa14.96□□□□□ -0.02
LSM3-201ENST00000306024 RTN4Q9NQC3 1192 aaKnown RBP14.96□□□□□ -0.02
LSM3-201ENST00000306024 NAIPQ13075 1403 aa14.95□□□□□ -0.02
LSM3-201ENST00000306024 EIF5BO60841 1220 aaKnown RBP14.95□□□□□ -0.02
LSM3-201ENST00000306024 CCDC141Q6ZP82 1450 aa14.95□□□□□ -0.02
LSM3-201ENST00000306024 CHGAP10645 457 aaKnown RBP14.94□□□□□ -0.02
LSM3-201ENST00000306024 MLECQ14165 292 aa14.94□□□□□ -0.02
LSM3-201ENST00000306024 PLPPR3Q6T4P5 718 aa14.94□□□□□ -0.02
LSM3-201ENST00000306024 ABCC10Q5T3U5 1492 aa14.93□□□□□ -0.02
LSM3-201ENST00000306024 ADGRL1O94910 1474 aa14.93□□□□□ -0.02
LSM3-201ENST00000306024 TCOF1Q13428 1488 aaKnown RBP14.93□□□□□ -0.02
LSM3-201ENST00000306024 CCDC136Q96JN2 1154 aa14.93□□□□□ -0.02
LSM3-201ENST00000306024 ADCY10Q96PN6 1610 aa14.93□□□□□ -0.02
LSM3-201ENST00000306024 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.92□□□□□ -0.02
LSM3-201ENST00000306024 KANK1Q14678 1352 aa14.92□□□□□ -0.02
LSM3-201ENST00000306024 MSH5O43196 834 aa14.92□□□□□ -0.02
LSM3-201ENST00000306024 AKNAQ7Z591 1439 aa14.91□□□□□ -0.02
LSM3-201ENST00000306024 ROCK1Q13464 1354 aa14.91□□□□□ -0.02
LSM3-201ENST00000306024 NCOA1Q15788 1441 aa14.9□□□□□ -0.02
LSM3-201ENST00000306024 RGL3Q3MIN7 710 aa14.9□□□□□ -0.02
LSM3-201ENST00000306024 KDM2AQ9Y2K7 1162 aa14.9□□□□□ -0.02
LSM3-201ENST00000306024 RIMBP3CA6NJZ7 1639 aa14.89□□□□□ -0.03
LSM3-201ENST00000306024 RIMBP3BA6NNM3 1639 aa14.89□□□□□ -0.03
LSM3-201ENST00000306024 RIMBP3Q9UFD9 1639 aa14.89□□□□□ -0.03
LSM3-201ENST00000306024 SYCP2Q9BX26 1530 aa14.89□□□□□ -0.03
LSM3-201ENST00000306024 TTC37Q6PGP7 1564 aa14.87□□□□□ -0.03
LSM3-201ENST00000306024 POLR3GLQ9BT43 218 aa14.87□□□□□ -0.03
LSM3-201ENST00000306024 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.87□□□□□ -0.03
LSM3-201ENST00000306024 TRAPPC8Q9Y2L5 1435 aa14.86□□□□□ -0.03
LSM3-201ENST00000306024 FANCIQ9NVI1 1328 aa14.86□□□□□ -0.03
LSM3-201ENST00000306024 KIAA1107Q9UPP5 1409 aa14.86□□□□□ -0.03
LSM3-201ENST00000306024 ANP32AP39687 249 aaKnown RBP14.85□□□□□ -0.03
LSM3-201ENST00000306024 STAG3Q9UJ98 1225 aa14.85□□□□□ -0.03
LSM3-201ENST00000306024 HNRNPUQ00839 825 aaKnown RBP eCLIP14.84□□□□□ -0.03
LSM3-201ENST00000306024 WASHC2CQ9Y4E1 1318 aa14.84□□□□□ -0.03
LSM3-201ENST00000306024 NOP58Q9Y2X3 529 aaKnown RBP14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms