RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 RSPH4AQ5TD94 716 aa16.71■□□□□ 0.27
SYNGAP1-201ENST00000293748 GTF3C3Q9Y5Q9 886 aa16.71■□□□□ 0.27
SYNGAP1-201ENST00000293748 GLI2P10070 1586 aa16.7■□□□□ 0.26
SYNGAP1-201ENST00000293748 DIP2BQ9P265 1576 aa16.7■□□□□ 0.26
SYNGAP1-201ENST00000293748 PLEKHH2Q8IVE3 1493 aa16.69■□□□□ 0.26
SYNGAP1-201ENST00000293748 POLR3GLQ9BT43 218 aa16.68■□□□□ 0.26
SYNGAP1-201ENST00000293748 FANCAO15360 1455 aa16.68■□□□□ 0.26
SYNGAP1-201ENST00000293748 PLCH2O75038 1416 aa16.67■□□□□ 0.26
SYNGAP1-201ENST00000293748 NEO1Q92859 1461 aa16.67■□□□□ 0.26
SYNGAP1-201ENST00000293748 MAGI3Q5TCQ9 1506 aa16.66■□□□□ 0.26
SYNGAP1-201ENST00000293748 DENND4BO75064 1496 aaPredicted RBP16.66■□□□□ 0.26
SYNGAP1-201ENST00000293748 MAP3K1Q13233 1512 aa16.66■□□□□ 0.26
SYNGAP1-201ENST00000293748 LRRC9Q6ZRR7 1453 aa16.65■□□□□ 0.26
SYNGAP1-201ENST00000293748 TIAM1Q13009 1591 aa16.65■□□□□ 0.26
SYNGAP1-201ENST00000293748 AKNAQ7Z591 1439 aa16.65■□□□□ 0.26
SYNGAP1-201ENST00000293748 SCAPERQ9BY12 1400 aa16.64■□□□□ 0.25
SYNGAP1-201ENST00000293748 CFAP43Q8NDM7 1665 aa16.64■□□□□ 0.25
SYNGAP1-201ENST00000293748 ZNF316A6NFI3 1004 aaPredicted RBP16.64■□□□□ 0.25
SYNGAP1-201ENST00000293748 SPAG9O60271 1321 aaKnown RBP16.63■□□□□ 0.25
SYNGAP1-201ENST00000293748 ADGRL1O94910 1474 aa16.63■□□□□ 0.25
SYNGAP1-201ENST00000293748 CFAP74Q9C0B2 1584 aa16.63■□□□□ 0.25
SYNGAP1-201ENST00000293748 KANK4Q5T7N3 995 aaPredicted RBP16.62■□□□□ 0.25
SYNGAP1-201ENST00000293748 NCOA2Q15596 1464 aa16.62■□□□□ 0.25
SYNGAP1-201ENST00000293748 AEBP2Q6ZN18 517 aaPredicted RBP16.62■□□□□ 0.25
SYNGAP1-201ENST00000293748 KDM6BO15054 1643 aa16.61■□□□□ 0.25
SYNGAP1-201ENST00000293748 TSPOAP1O95153 1857 aa16.6■□□□□ 0.25
SYNGAP1-201ENST00000293748 SUPT6HQ7KZ85 1726 aaKnown RBP16.6■□□□□ 0.25
SYNGAP1-201ENST00000293748 RAPGEF3O95398 923 aa16.59■□□□□ 0.25
SYNGAP1-201ENST00000293748 HNRNPMP52272 730 aaKnown RBP eCLIP16.59■□□□□ 0.25
SYNGAP1-201ENST00000293748 ABCA9Q8IUA7 1624 aa16.57■□□□□ 0.24
SYNGAP1-201ENST00000293748 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.57■□□□□ 0.247e-8■□□□□ 9
SYNGAP1-201ENST00000293748 POGZQ7Z3K3 1410 aa16.57■□□□□ 0.24
SYNGAP1-201ENST00000293748 MYOM3Q5VTT5 1437 aa16.56■□□□□ 0.24
SYNGAP1-201ENST00000293748 MIA2Q96PC5 1412 aa16.54■□□□□ 0.24
SYNGAP1-201ENST00000293748 ARAP3Q8WWN8 1544 aa16.53■□□□□ 0.24
SYNGAP1-201ENST00000293748 CLSPNQ9HAW4 1339 aa16.53■□□□□ 0.24
SYNGAP1-201ENST00000293748 ACIN1Q9UKV3 1341 aaKnown RBP16.53■□□□□ 0.24
SYNGAP1-201ENST00000293748 ZNF518AQ6AHZ1 1483 aa16.52■□□□□ 0.24
SYNGAP1-201ENST00000293748 AFAP1Q8N556 730 aa16.52■□□□□ 0.24
SYNGAP1-201ENST00000293748 GPATCH8Q9UKJ3 1502 aaKnown RBP16.52■□□□□ 0.24
SYNGAP1-201ENST00000293748 MLECQ14165 292 aa16.52■□□□□ 0.23
SYNGAP1-201ENST00000293748 ITSN2Q9NZM3 1697 aa16.51■□□□□ 0.23
SYNGAP1-201ENST00000293748 MYO5CQ9NQX4 1742 aa16.51■□□□□ 0.23
SYNGAP1-201ENST00000293748 MAP3K4Q9Y6R4 1608 aa16.5■□□□□ 0.23
SYNGAP1-201ENST00000293748 TTC37Q6PGP7 1564 aa16.49■□□□□ 0.23
SYNGAP1-201ENST00000293748 CNGB1Q14028 1251 aaPredicted RBP16.49■□□□□ 0.23
SYNGAP1-201ENST00000293748 KIAA1107Q9UPP5 1409 aa16.49■□□□□ 0.23
SYNGAP1-201ENST00000293748 CHIC2Q9UKJ5 165 aa16.48■□□□□ 0.23
SYNGAP1-201ENST00000293748 KIF13AQ9H1H9 1805 aa16.47■□□□□ 0.23
SYNGAP1-201ENST00000293748 PLPPR3Q6T4P5 718 aa16.46■□□□□ 0.23
SYNGAP1-201ENST00000293748 BCANQ96GW7 911 aa16.46■□□□□ 0.23
SYNGAP1-201ENST00000293748 FGD6Q6ZV73 1430 aa16.46■□□□□ 0.23
SYNGAP1-201ENST00000293748 ANKRD30AQ9BXX3 1397 aa16.46■□□□□ 0.23
SYNGAP1-201ENST00000293748 MAGI2Q86UL8 1455 aa16.45■□□□□ 0.22
SYNGAP1-201ENST00000293748 ZNF644Q9H582 1327 aaPredicted RBP16.45■□□□□ 0.22
SYNGAP1-201ENST00000293748 CCDC141Q6ZP82 1450 aa16.44■□□□□ 0.22
SYNGAP1-201ENST00000293748 KANK1Q14678 1352 aa16.42■□□□□ 0.22
SYNGAP1-201ENST00000293748 CAMSAP2Q08AD1 1489 aa16.42■□□□□ 0.22
SYNGAP1-201ENST00000293748 ANP32CO43423 234 aa16.42■□□□□ 0.22
SYNGAP1-201ENST00000293748 GGT6Q6P531 493 aa16.42■□□□□ 0.22
SYNGAP1-201ENST00000293748 PREX2Q70Z35 1606 aa16.41■□□□□ 0.22
SYNGAP1-201ENST00000293748 ZFYVE16Q7Z3T8 1539 aa16.4■□□□□ 0.22
SYNGAP1-201ENST00000293748 KIF3BO15066 747 aa16.4■□□□□ 0.22
SYNGAP1-201ENST00000293748 RRP7BPQ9NSQ0 103 aa16.4■□□□□ 0.22
SYNGAP1-201ENST00000293748 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.39■□□□□ 0.211e-6■■■■□ 21.3
SYNGAP1-201ENST00000293748 SYCP2Q9BX26 1530 aa16.38■□□□□ 0.21
SYNGAP1-201ENST00000293748 TRIM52Q96A61 297 aa16.38■□□□□ 0.21
SYNGAP1-201ENST00000293748 ATP10AO60312 1499 aa16.37■□□□□ 0.21
SYNGAP1-201ENST00000293748 C9orf84Q5VXU9 1444 aa16.37■□□□□ 0.21
SYNGAP1-201ENST00000293748 TRAPPC8Q9Y2L5 1435 aa16.37■□□□□ 0.21
SYNGAP1-201ENST00000293748 ABCC1P33527 1531 aa16.35■□□□□ 0.21
SYNGAP1-201ENST00000293748 RTEL1-TNFRSF6BF6WH68 1400 aa16.34■□□□□ 0.21
SYNGAP1-201ENST00000293748 PPP6R1Q9UPN7 881 aa16.33■□□□□ 0.21
SYNGAP1-201ENST00000293748 MLH3Q9UHC1 1453 aa16.33■□□□□ 0.2
SYNGAP1-201ENST00000293748 WASHC2CQ9Y4E1 1318 aa16.32■□□□□ 0.2
SYNGAP1-201ENST00000293748 KIF15Q9NS87 1388 aa16.32■□□□□ 0.2
SYNGAP1-201ENST00000293748 PTPN23Q9H3S7 1636 aa16.31■□□□□ 0.2
SYNGAP1-201ENST00000293748 LRRIQ1Q96JM4 1722 aa16.31■□□□□ 0.2
SYNGAP1-201ENST00000293748 STAG3Q9UJ98 1225 aa16.3■□□□□ 0.2
SYNGAP1-201ENST00000293748 CDC42BPAQ5VT25 1732 aa16.3■□□□□ 0.2
SYNGAP1-201ENST00000293748 DAPK1P53355 1430 aa16.3■□□□□ 0.2
SYNGAP1-201ENST00000293748 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.29■□□□□ 0.24e-6■■■■□ 23.1
SYNGAP1-201ENST00000293748 HECW2Q9P2P5 1572 aa16.29■□□□□ 0.2
SYNGAP1-201ENST00000293748 A2MP01023 1474 aa16.29■□□□□ 0.2
SYNGAP1-201ENST00000293748 COL17A1Q9UMD9 1497 aaPredicted RBP16.29■□□□□ 0.2
SYNGAP1-201ENST00000293748 SAMD9LQ8IVG5 1584 aa16.29■□□□□ 0.2
SYNGAP1-201ENST00000293748 NEUROD1Q13562 356 aa16.29■□□□□ 0.2
SYNGAP1-201ENST00000293748 DHX29Q7Z478 1369 aaKnown RBP16.28■□□□□ 0.2
SYNGAP1-201ENST00000293748 ATP7AQ04656 1500 aa16.28■□□□□ 0.2
SYNGAP1-201ENST00000293748 YEATS2Q9ULM3 1422 aa16.27■□□□□ 0.2
SYNGAP1-201ENST00000293748 ARHGEF5Q12774 1597 aa16.26■□□□□ 0.19
SYNGAP1-201ENST00000293748 CDC42BPBQ9Y5S2 1711 aa16.26■□□□□ 0.19
SYNGAP1-201ENST00000293748 ANP32AP39687 249 aaKnown RBP16.26■□□□□ 0.19
SYNGAP1-201ENST00000293748 PPRC1Q5VV67 1664 aaKnown RBP16.25■□□□□ 0.19
SYNGAP1-201ENST00000293748 TCOF1Q13428 1488 aaKnown RBP16.25■□□□□ 0.19
SYNGAP1-201ENST00000293748 ZMYM4Q5VZL5 1548 aa16.25■□□□□ 0.19
SYNGAP1-201ENST00000293748 CNTLNQ9NXG0 1405 aa16.25■□□□□ 0.19
SYNGAP1-201ENST00000293748 ABCC5O15440 1437 aa16.24■□□□□ 0.19
SYNGAP1-201ENST00000293748 ARHGEF40Q8TER5 1519 aa16.24■□□□□ 0.19
SYNGAP1-201ENST00000293748 SHANK2Q9UPX8 1470 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms