RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 ABCA9Q8IUA7 1624 aa24.96■■□□□ 1.59
CPSF4-201ENST00000292476 TEX14Q8IWB6 1497 aa24.94■■□□□ 1.58
CPSF4-201ENST00000292476 KIF14Q15058 1648 aa24.88■■□□□ 1.57
CPSF4-201ENST00000292476 TCOF1Q13428 1488 aaKnown RBP24.88■■□□□ 1.57
CPSF4-201ENST00000292476 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.88■■□□□ 1.577e-9■■■□□ 17.9
CPSF4-201ENST00000292476 PTPN23Q9H3S7 1636 aa24.88■■□□□ 1.57
CPSF4-201ENST00000292476 TTC37Q6PGP7 1564 aa24.86■■□□□ 1.57
CPSF4-201ENST00000292476 ITGAEP38570 1179 aa24.85■■□□□ 1.57
CPSF4-201ENST00000292476 ITSN2Q9NZM3 1697 aa24.84■■□□□ 1.57
CPSF4-201ENST00000292476 COL17A1Q9UMD9 1497 aaPredicted RBP24.84■■□□□ 1.57
CPSF4-201ENST00000292476 CFDP1Q9UEE9 299 aaPredicted RBP24.78■■□□□ 1.56
CPSF4-201ENST00000292476 GPATCH8Q9UKJ3 1502 aaKnown RBP24.78■■□□□ 1.56
CPSF4-201ENST00000292476 SETD5Q9C0A6 1442 aa24.74■■□□□ 1.55
CPSF4-201ENST00000292476 NEO1Q92859 1461 aa24.73■■□□□ 1.55
CPSF4-201ENST00000292476 MYO5CQ9NQX4 1742 aa24.73■■□□□ 1.55
CPSF4-201ENST00000292476 FANCAO15360 1455 aa24.72■■□□□ 1.55
CPSF4-201ENST00000292476 PLCH2O75038 1416 aa24.7■■□□□ 1.54
CPSF4-201ENST00000292476 ARAP3Q8WWN8 1544 aa24.7■■□□□ 1.54
CPSF4-201ENST00000292476 CLSPNQ9HAW4 1339 aa24.7■■□□□ 1.54
CPSF4-201ENST00000292476 CFAP74Q9C0B2 1584 aa24.68■■□□□ 1.54
CPSF4-201ENST00000292476 AKNAQ7Z591 1439 aa24.67■■□□□ 1.54
CPSF4-201ENST00000292476 CDC42BPAQ5VT25 1732 aa24.67■■□□□ 1.54
CPSF4-201ENST00000292476 CAMSAP2Q08AD1 1489 aa24.66■■□□□ 1.54
CPSF4-201ENST00000292476 RAB3GAP2Q9H2M9 1393 aa24.65■■□□□ 1.54
CPSF4-201ENST00000292476 HFM1A2PYH4 1435 aa24.65■■□□□ 1.54
CPSF4-201ENST00000292476 ACIN1Q9UKV3 1341 aaKnown RBP24.65■■□□□ 1.54
CPSF4-201ENST00000292476 RAPGEF3O95398 923 aa24.64■■□□□ 1.53
CPSF4-201ENST00000292476 ARHGAP5Q13017 1502 aa24.64■■□□□ 1.53
CPSF4-201ENST00000292476 DNMT1P26358 1616 aaKnown RBP24.63■■□□□ 1.53
CPSF4-201ENST00000292476 DAPK1P53355 1430 aa24.63■■□□□ 1.53
CPSF4-201ENST00000292476 PTPRKQ15262 1439 aa24.63■■□□□ 1.53
CPSF4-201ENST00000292476 CDC42BPBQ9Y5S2 1711 aa24.63■■□□□ 1.53
CPSF4-201ENST00000292476 DIEXFQ68CQ4 756 aaKnown RBP24.62■■□□□ 1.53
CPSF4-201ENST00000292476 PREX2Q70Z35 1606 aa24.61■■□□□ 1.53
CPSF4-201ENST00000292476 EFCAB2Q5VUJ9 269 aa24.61■■□□□ 1.53
CPSF4-201ENST00000292476 ZNF777Q9ULD5 760 aaPredicted RBP24.61■■□□□ 1.53
CPSF4-201ENST00000292476 ROCK1Q13464 1354 aa24.61■■□□□ 1.53
CPSF4-201ENST00000292476 RSPH4AQ5TD94 716 aa24.6■■□□□ 1.53
CPSF4-201ENST00000292476 ZNF644Q9H582 1327 aaPredicted RBP24.6■■□□□ 1.53
CPSF4-201ENST00000292476 FRMPD1Q5SYB0 1578 aa24.59■■□□□ 1.53
CPSF4-201ENST00000292476 ADGRL1O94910 1474 aa24.59■■□□□ 1.53
CPSF4-201ENST00000292476 ZNF316A6NFI3 1004 aaPredicted RBP24.59■■□□□ 1.53
CPSF4-201ENST00000292476 DENND4BO75064 1496 aaPredicted RBP24.58■■□□□ 1.53
CPSF4-201ENST00000292476 ABCC5O15440 1437 aa24.58■■□□□ 1.53
CPSF4-201ENST00000292476 DHX57Q6P158 1386 aaKnown RBP24.56■■□□□ 1.52
CPSF4-201ENST00000292476 SCAPERQ9BY12 1400 aa24.56■■□□□ 1.52
CPSF4-201ENST00000292476 RICTORQ6R327 1708 aa24.56■■□□□ 1.52
CPSF4-201ENST00000292476 PLEKHH2Q8IVE3 1493 aa24.56■■□□□ 1.52
CPSF4-201ENST00000292476 NAIPQ13075 1403 aa24.55■■□□□ 1.52
CPSF4-201ENST00000292476 CHIC2Q9UKJ5 165 aa24.52■■□□□ 1.52
CPSF4-201ENST00000292476 ARHGEF5Q12774 1597 aa24.51■■□□□ 1.51
CPSF4-201ENST00000292476 SHANK2Q9UPX8 1470 aa24.5■■□□□ 1.51
CPSF4-201ENST00000292476 TSPY4P0CV99 314 aa24.5■■□□□ 1.51
CPSF4-201ENST00000292476 TSPY10P0CW01 314 aa24.5■■□□□ 1.51
CPSF4-201ENST00000292476 GCC2Q8IWJ2 1684 aa24.5■■□□□ 1.51
CPSF4-201ENST00000292476 POGZQ7Z3K3 1410 aa24.49■■□□□ 1.51
CPSF4-201ENST00000292476 KIAA1107Q9UPP5 1409 aa24.49■■□□□ 1.51
CPSF4-201ENST00000292476 RRP7BPQ9NSQ0 103 aa24.47■■□□□ 1.51
CPSF4-201ENST00000292476 ADGRL2O95490 1459 aa24.47■■□□□ 1.51
CPSF4-201ENST00000292476 SAMD9LQ8IVG5 1584 aa24.47■■□□□ 1.51
CPSF4-201ENST00000292476 CROCC2H7BZ55 1655 aa24.47■■□□□ 1.51
CPSF4-201ENST00000292476 ANKRD30AQ9BXX3 1397 aa24.46■■□□□ 1.51
CPSF4-201ENST00000292476 ABCC1P33527 1531 aa24.46■■□□□ 1.51
CPSF4-201ENST00000292476 ADGBQ8N7X0 1667 aa24.45■■□□□ 1.5
CPSF4-201ENST00000292476 ZMYM4Q5VZL5 1548 aa24.44■■□□□ 1.5
CPSF4-201ENST00000292476 CCDC141Q6ZP82 1450 aa24.44■■□□□ 1.5
CPSF4-201ENST00000292476 MBD5Q9P267 1494 aa24.44■■□□□ 1.5
CPSF4-201ENST00000292476 ARHGEF12Q9NZN5 1544 aa24.44■■□□□ 1.5
CPSF4-201ENST00000292476 AFAP1Q8N556 730 aa24.43■■□□□ 1.5
CPSF4-201ENST00000292476 NCOA1Q15788 1441 aa24.42■■□□□ 1.5
CPSF4-201ENST00000292476 ZNF518AQ6AHZ1 1483 aa24.42■■□□□ 1.5
CPSF4-201ENST00000292476 HNRNPMP52272 730 aaKnown RBP eCLIP24.41■■□□□ 1.5
CPSF4-201ENST00000292476 C9orf84Q5VXU9 1444 aa24.41■■□□□ 1.5
CPSF4-201ENST00000292476 ARHGEF40Q8TER5 1519 aa24.41■■□□□ 1.5
CPSF4-201ENST00000292476 TRAPPC8Q9Y2L5 1435 aa24.4■■□□□ 1.5
CPSF4-201ENST00000292476 SYCP2Q9BX26 1530 aa24.4■■□□□ 1.5
CPSF4-201ENST00000292476 YEATS2Q9ULM3 1422 aa24.4■■□□□ 1.5
CPSF4-201ENST00000292476 ZFYVE16Q7Z3T8 1539 aa24.39■■□□□ 1.5
CPSF4-201ENST00000292476 KDM4FA0A1W2PPD8 638 aa24.38■■□□□ 1.49
CPSF4-201ENST00000292476 KDM5CP41229 1560 aa24.37■■□□□ 1.49
CPSF4-201ENST00000292476 MAGI2Q86UL8 1455 aa24.36■■□□□ 1.49
CPSF4-201ENST00000292476 MYT1LQ9UL68 1186 aa24.36■■□□□ 1.49
CPSF4-201ENST00000292476 AEBP2Q6ZN18 517 aaPredicted RBP24.34■■□□□ 1.49
CPSF4-201ENST00000292476 MAST1Q9Y2H9 1570 aa24.34■■□□□ 1.49
CPSF4-201ENST00000292476 HECW2Q9P2P5 1572 aa24.33■■□□□ 1.49
CPSF4-201ENST00000292476 CENPBP07199 599 aaPredicted RBP24.33■■□□□ 1.49
CPSF4-201ENST00000292476 SCAF1Q9H7N4 1312 aaKnown RBP24.31■■□□□ 1.48
CPSF4-201ENST00000292476 ARID4BQ4LE39 1312 aaPredicted RBP24.3■■□□□ 1.48
CPSF4-201ENST00000292476 TRIM52Q96A61 297 aa24.3■■□□□ 1.48
CPSF4-201ENST00000292476 ANKRD50Q9ULJ7 1429 aa24.29■■□□□ 1.48
CPSF4-201ENST00000292476 SIGLEC1Q9BZZ2 1709 aa24.28■■□□□ 1.48
CPSF4-201ENST00000292476 MLH3Q9UHC1 1453 aa24.28■■□□□ 1.48
CPSF4-201ENST00000292476 KIF15Q9NS87 1388 aa24.27■■□□□ 1.48
CPSF4-201ENST00000292476 KIDINS220Q9ULH0 1771 aa24.26■■□□□ 1.47
CPSF4-201ENST00000292476 ABCA6Q8N139 1617 aa24.26■■□□□ 1.47
CPSF4-201ENST00000292476 ATP10AO60312 1499 aa24.26■■□□□ 1.47
CPSF4-201ENST00000292476 DIP2CQ9Y2E4 1556 aa24.25■■□□□ 1.47
CPSF4-201ENST00000292476 TIMELESSQ9UNS1 1208 aa24.24■■□□□ 1.47
CPSF4-201ENST00000292476 RTEL1-TNFRSF6BF6WH68 1400 aa24.24■■□□□ 1.47
CPSF4-201ENST00000292476 SPAG9O60271 1321 aaKnown RBP24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms