RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 UGGT2Q9NYU1 1516 aa23.15■■□□□ 1.3
VPS54-201ENST00000272322 TSHZ2Q9NRE2 1034 aa23.13■■□□□ 1.29
VPS54-201ENST00000272322 PLB1Q6P1J6 1458 aa23.12■■□□□ 1.29
VPS54-201ENST00000272322 CCER2I3L3R5 266 aa23.1■■□□□ 1.29
VPS54-201ENST00000272322 PKD2Q13563 968 aa23.1■■□□□ 1.29
VPS54-201ENST00000272322 PLEKHD1A6NEE1 506 aa23.08■■□□□ 1.29
VPS54-201ENST00000272322 HNRNPMP52272 730 aaKnown RBP eCLIP23.08■■□□□ 1.292e-6■■■■□ 21.4
VPS54-201ENST00000272322 MRS2Q9HD23 443 aa23.07■■□□□ 1.28
VPS54-201ENST00000272322 DENND4BO75064 1496 aaPredicted RBP23.06■■□□□ 1.28
VPS54-201ENST00000272322 HECW1Q76N89 1606 aa23.05■■□□□ 1.28
VPS54-201ENST00000272322 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.05■■□□□ 1.286e-8■■□□□ 11.6
VPS54-201ENST00000272322 ADAMTS12P58397 1594 aa23.05■■□□□ 1.28
VPS54-201ENST00000272322 ABCC5O15440 1437 aa23.04■■□□□ 1.28
VPS54-201ENST00000272322 PBRM1Q86U86 1689 aa23.04■■□□□ 1.28
VPS54-201ENST00000272322 NUP153P49790 1475 aaKnown RBP23.03■■□□□ 1.28
VPS54-201ENST00000272322 DAPK1P53355 1430 aa23.03■■□□□ 1.28
VPS54-201ENST00000272322 IFT140Q96RY7 1462 aa23.02■■□□□ 1.28
VPS54-201ENST00000272322 DISP1Q96F81 1524 aa23.02■■□□□ 1.28
VPS54-201ENST00000272322 KIAA0586Q9BVV6 1533 aa23.01■■□□□ 1.27
VPS54-201ENST00000272322 RGL3Q3MIN7 710 aa23.01■■□□□ 1.27
VPS54-201ENST00000272322 GRIN2AQ12879 1464 aa23■■□□□ 1.27
VPS54-201ENST00000272322 WDR62O43379 1518 aa22.99■■□□□ 1.27
VPS54-201ENST00000272322 TSPY4P0CV99 314 aa22.97■■□□□ 1.27
VPS54-201ENST00000272322 TSPY10P0CW01 314 aa22.97■■□□□ 1.27
VPS54-201ENST00000272322 MIA2Q96PC5 1412 aa22.96■■□□□ 1.27
VPS54-201ENST00000272322 ANKRD30BQ9BXX2 1392 aa22.95■■□□□ 1.27
VPS54-201ENST00000272322 ARHGEF11O15085 1522 aa22.94■■□□□ 1.26
VPS54-201ENST00000272322 PRKRIP1Q9H875 184 aaPredicted RBP22.94■■□□□ 1.26
VPS54-201ENST00000272322 KIF7Q2M1P5 1343 aa22.93■■□□□ 1.26
VPS54-201ENST00000272322 SALL2Q9Y467 1007 aaPredicted RBP22.93■■□□□ 1.26
VPS54-201ENST00000272322 NUP155O75694 1391 aa22.93■■□□□ 1.26
VPS54-201ENST00000272322 TCOF1Q13428 1488 aaKnown RBP22.92■■□□□ 1.26
VPS54-201ENST00000272322 KDM5BQ9UGL1 1544 aa22.91■■□□□ 1.26
VPS54-201ENST00000272322 DCAF11Q8TEB1 546 aa22.91■■□□□ 1.26
VPS54-201ENST00000272322 CCDC7Q96M83 1385 aa22.89■■□□□ 1.25
VPS54-201ENST00000272322 KIAA0556O60303 1618 aa22.88■■□□□ 1.25
VPS54-201ENST00000272322 EIF4G3O43432 1585 aaKnown RBP22.87■■□□□ 1.25
VPS54-201ENST00000272322 TROQ12816 1431 aaPredicted RBP22.87■■□□□ 1.25
VPS54-201ENST00000272322 CARD11Q9BXL7 1154 aa22.87■■□□□ 1.25
VPS54-201ENST00000272322 CARMIL2Q6F5E8 1435 aa22.86■■□□□ 1.25
VPS54-201ENST00000272322 NCOA1Q15788 1441 aa22.84■■□□□ 1.25
VPS54-201ENST00000272322 CAMSAP2Q08AD1 1489 aa22.84■■□□□ 1.25
VPS54-201ENST00000272322 GPATCH8Q9UKJ3 1502 aaKnown RBP22.83■■□□□ 1.25
VPS54-201ENST00000272322 ANKRD30AQ9BXX3 1397 aa22.81■■□□□ 1.24
VPS54-201ENST00000272322 RAPGEF6Q8TEU7 1601 aa22.8■■□□□ 1.24
VPS54-201ENST00000272322 AKNAQ7Z591 1439 aa22.8■■□□□ 1.24
VPS54-201ENST00000272322 ST20-MTHFSA0A0A6YYL1 179 aa22.8■■□□□ 1.24
VPS54-201ENST00000272322 ANKRD50Q9ULJ7 1429 aa22.79■■□□□ 1.24
VPS54-201ENST00000272322 B4GALNT3Q6L9W6 998 aa22.79■■□□□ 1.24
VPS54-201ENST00000272322 KIF14Q15058 1648 aa22.79■■□□□ 1.24
VPS54-201ENST00000272322 MYT1LQ9UL68 1186 aa22.78■■□□□ 1.24
VPS54-201ENST00000272322 CNTLNQ9NXG0 1405 aa22.78■■□□□ 1.24
VPS54-201ENST00000272322 CEP170Q5SW79 1584 aa22.78■■□□□ 1.24
VPS54-201ENST00000272322 RPRD2Q5VT52 1461 aaKnown RBP22.78■■□□□ 1.24
VPS54-201ENST00000272322 SYNJ2O15056 1496 aa22.78■■□□□ 1.24
VPS54-201ENST00000272322 ROCK1Q13464 1354 aa22.77■■□□□ 1.24
VPS54-201ENST00000272322 RBM19Q9Y4C8 960 aaKnown RBP22.77■■□□□ 1.24
VPS54-201ENST00000272322 USP47Q96K76 1375 aa22.76■■□□□ 1.23
VPS54-201ENST00000272322 PTPRGP23470 1445 aa22.75■■□□□ 1.23
VPS54-201ENST00000272322 PZPP20742 1482 aa22.72■■□□□ 1.23
VPS54-201ENST00000272322 TMC1Q8TDI8 760 aa22.72■■□□□ 1.23
VPS54-201ENST00000272322 ATP10BO94823 1461 aa22.71■■□□□ 1.23
VPS54-201ENST00000272322 GCC2Q8IWJ2 1684 aa22.71■■□□□ 1.23
VPS54-201ENST00000272322 KIF15Q9NS87 1388 aa22.7■■□□□ 1.22
VPS54-201ENST00000272322 NBPF1Q3BBV0 1214 aa22.7■■□□□ 1.22
VPS54-201ENST00000272322 TEX14Q8IWB6 1497 aa22.69■■□□□ 1.22
VPS54-201ENST00000272322 MAGI1Q96QZ7 1491 aaPredicted RBP22.69■■□□□ 1.22
VPS54-201ENST00000272322 KIAA1107Q9UPP5 1409 aa22.68■■□□□ 1.22
VPS54-201ENST00000272322 C9orf84Q5VXU9 1444 aa22.68■■□□□ 1.22
VPS54-201ENST00000272322 DNMT1P26358 1616 aaKnown RBP22.68■■□□□ 1.22
VPS54-201ENST00000272322 SENP3Q9H4L4 574 aaPredicted RBP22.62■■□□□ 1.21
VPS54-201ENST00000272322 CC2D1BQ5T0F9 858 aaKnown RBP22.62■■□□□ 1.21
VPS54-201ENST00000272322 ROCK2O75116 1388 aaKnown RBP22.59■■□□□ 1.21
VPS54-201ENST00000272322 SPATA31E1Q6ZUB1 1445 aa22.59■■□□□ 1.21
VPS54-201ENST00000272322 NUP160Q12769 1436 aa22.58■■□□□ 1.21
VPS54-201ENST00000272322 AFAP1Q8N556 730 aa22.54■■□□□ 1.2
VPS54-201ENST00000272322 ZBED9Q6R2W3 1325 aa22.53■■□□□ 1.2
VPS54-201ENST00000272322 PPP4R2Q9NY27 417 aa22.5■■□□□ 1.19
VPS54-201ENST00000272322 DHX29Q7Z478 1369 aaKnown RBP22.49■■□□□ 1.19
VPS54-201ENST00000272322 ANP32EQ9BTT0 268 aa22.47■■□□□ 1.19
VPS54-201ENST00000272322 PNISRQ8TF01 805 aaKnown RBP22.46■■□□□ 1.19
VPS54-201ENST00000272322 CCDC144AA2RUR9 1427 aa22.46■■□□□ 1.19
VPS54-201ENST00000272322 ABCC10Q5T3U5 1492 aa22.46■■□□□ 1.19
VPS54-201ENST00000272322 ARHGAP5Q13017 1502 aa22.44■■□□□ 1.18
VPS54-201ENST00000272322 CCDC136Q96JN2 1154 aa22.43■■□□□ 1.18
VPS54-201ENST00000272322 PLEKHH2Q8IVE3 1493 aa22.42■■□□□ 1.18
VPS54-201ENST00000272322 MSH5O43196 834 aa22.41■■□□□ 1.18
VPS54-201ENST00000272322 BCORL1Q5H9F3 1711 aa22.41■■□□□ 1.18
VPS54-201ENST00000272322 PANK3Q9H999 370 aa22.41■■□□□ 1.18
VPS54-201ENST00000272322 ERCC6L2Q5T890 1561 aa22.41■■□□□ 1.18
VPS54-201ENST00000272322 ITSN2Q9NZM3 1697 aa22.4■■□□□ 1.18
VPS54-201ENST00000272322 ADGRL2O95490 1459 aa22.4■■□□□ 1.18
VPS54-201ENST00000272322 MBD5Q9P267 1494 aa22.4■■□□□ 1.18
VPS54-201ENST00000272322 ABCA8O94911 1581 aa22.39■■□□□ 1.18
VPS54-201ENST00000272322 CHGAP10645 457 aaKnown RBP22.39■■□□□ 1.18
VPS54-201ENST00000272322 ERICH6Q7L0X2 663 aa22.39■■□□□ 1.18
VPS54-201ENST00000272322 CDCA7LQ96GN5 454 aa22.39■■□□□ 1.17
VPS54-201ENST00000272322 NUDCQ9Y266 331 aa22.39■■□□□ 1.17
VPS54-201ENST00000272322 CDC42BPAQ5VT25 1732 aa22.38■■□□□ 1.17
VPS54-201ENST00000272322 SYCP2Q9BX26 1530 aa22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms