RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 NCOA1Q15788 1441 aa37.79■■■■□ 3.64
CBX4-201ENST00000269397 CNGB1Q14028 1251 aaPredicted RBP37.78■■■■□ 3.64
CBX4-201ENST00000269397 ERICH6Q7L0X2 663 aa37.75■■■■□ 3.63
CBX4-201ENST00000269397 EPRSP07814 1512 aaKnown RBP37.75■■■■□ 3.63
CBX4-201ENST00000269397 AKNAQ7Z591 1439 aa37.72■■■■□ 3.63
CBX4-201ENST00000269397 ERICH6BQ5W0A0 696 aa37.71■■■■□ 3.63
CBX4-201ENST00000269397 KIF7Q2M1P5 1343 aa37.69■■■■□ 3.62
CBX4-201ENST00000269397 ZBED9Q6R2W3 1325 aa37.68■■■■□ 3.62
CBX4-201ENST00000269397 KIF21AQ7Z4S6 1674 aa37.67■■■■□ 3.62
CBX4-201ENST00000269397 ANKRD30BQ9BXX2 1392 aa37.66■■■■□ 3.62
CBX4-201ENST00000269397 MIA2Q96PC5 1412 aa37.65■■■■□ 3.62
CBX4-201ENST00000269397 ZNF644Q9H582 1327 aaPredicted RBP37.65■■■■□ 3.62
CBX4-201ENST00000269397 SLC4A1APQ9BWU0 796 aaKnown RBP37.64■■■■□ 3.62
CBX4-201ENST00000269397 RPRD2Q5VT52 1461 aaKnown RBP37.61■■■■□ 3.61
CBX4-201ENST00000269397 POLR3GLQ9BT43 218 aa37.59■■■■□ 3.61
CBX4-201ENST00000269397 TEX14Q8IWB6 1497 aa37.58■■■■□ 3.61
CBX4-201ENST00000269397 SENP3-EIF4A1A0A087X0R7 540 aa37.57■■■■□ 3.61
CBX4-201ENST00000269397 DAPK1P53355 1430 aa37.56■■■■□ 3.6
CBX4-201ENST00000269397 IQGAP2Q13576 1575 aa37.55■■■■□ 3.6
CBX4-201ENST00000269397 PDS5BQ9NTI5 1447 aa37.55■■■■□ 3.6
CBX4-201ENST00000269397 SPATA31E1Q6ZUB1 1445 aa37.54■■■■□ 3.6
CBX4-201ENST00000269397 WDR62O43379 1518 aa37.51■■■■□ 3.6
CBX4-201ENST00000269397 ABCC5O15440 1437 aa37.51■■■■□ 3.59
CBX4-201ENST00000269397 TARBP1Q13395 1621 aaKnown RBP37.5■■■■□ 3.59
CBX4-201ENST00000269397 ZNF326Q5BKZ1 582 aaKnown RBP37.5■■■■□ 3.59
CBX4-201ENST00000269397 ROCK1Q13464 1354 aa37.45■■■■□ 3.59
CBX4-201ENST00000269397 PBRM1Q86U86 1689 aa37.4■■■■□ 3.58
CBX4-201ENST00000269397 DNMT1P26358 1616 aaKnown RBP37.37■■■■□ 3.57
CBX4-201ENST00000269397 DHX29Q7Z478 1369 aaKnown RBP37.35■■■■□ 3.57
CBX4-201ENST00000269397 POLR1AO95602 1720 aaPredicted RBP37.33■■■■□ 3.57
CBX4-201ENST00000269397 ADAMTS12P58397 1594 aa37.32■■■■□ 3.56
CBX4-201ENST00000269397 USP47Q96K76 1375 aa37.3■■■■□ 3.56
CBX4-201ENST00000269397 SMG6Q86US8 1419 aaKnown RBP37.29■■■■□ 3.56
CBX4-201ENST00000269397 PZPP20742 1482 aa37.29■■■■□ 3.56
CBX4-201ENST00000269397 ZNF777Q9ULD5 760 aaPredicted RBP37.29■■■■□ 3.56
CBX4-201ENST00000269397 NUDCQ9Y266 331 aa37.28■■■■□ 3.56
CBX4-201ENST00000269397 BCORL1Q5H9F3 1711 aa37.26■■■■□ 3.55
CBX4-201ENST00000269397 NUP153P49790 1475 aaKnown RBP37.25■■■■□ 3.55
CBX4-201ENST00000269397 CCDC136Q96JN2 1154 aa37.24■■■■□ 3.55
CBX4-201ENST00000269397 PKD2Q13563 968 aa37.23■■■■□ 3.55
CBX4-201ENST00000269397 CFDP1Q9UEE9 299 aaPredicted RBP37.22■■■■□ 3.55
CBX4-201ENST00000269397 PAK3O75914 559 aaPredicted RBP37.21■■■■□ 3.55
CBX4-201ENST00000269397 NOP58Q9Y2X3 529 aaKnown RBP37.19■■■■□ 3.54
CBX4-201ENST00000269397 PRG4Q92954 1404 aaPredicted RBP37.19■■■■□ 3.54
CBX4-201ENST00000269397 NBR1Q14596 966 aa37.17■■■■□ 3.54
CBX4-201ENST00000269397 DISP1Q96F81 1524 aa37.17■■■■□ 3.54
CBX4-201ENST00000269397 MBD5Q9P267 1494 aa37.15■■■■□ 3.54
CBX4-201ENST00000269397 TMC1Q8TDI8 760 aa37.15■■■■□ 3.54
CBX4-201ENST00000269397 KIAA1107Q9UPP5 1409 aa37.14■■■■□ 3.54
CBX4-201ENST00000269397 CAMSAP2Q08AD1 1489 aa37.14■■■■□ 3.54
CBX4-201ENST00000269397 PNISRQ8TF01 805 aaKnown RBP37.13■■■■□ 3.54
CBX4-201ENST00000269397 KIAA0556O60303 1618 aa37.13■■■■□ 3.53
CBX4-201ENST00000269397 RNF123Q5XPI4 1314 aa37.12■■■■□ 3.53
CBX4-201ENST00000269397 DEKP35659 375 aaKnown RBP37.12■■■■□ 3.53
CBX4-201ENST00000269397 ZNF608Q9ULD9 1512 aaPredicted RBP37.1■■■■□ 3.53
CBX4-201ENST00000269397 RAPGEF6Q8TEU7 1601 aa37.09■■■■□ 3.53
CBX4-201ENST00000269397 CARD11Q9BXL7 1154 aa37.06■■■■□ 3.52
CBX4-201ENST00000269397 KDM2AQ9Y2K7 1162 aa37.05■■■■□ 3.52
CBX4-201ENST00000269397 KDM5CP41229 1560 aa37.05■■■■□ 3.52
CBX4-201ENST00000269397 KIAA0586Q9BVV6 1533 aa37.04■■■■□ 3.52
CBX4-201ENST00000269397 TROQ12816 1431 aaPredicted RBP37.02■■■■□ 3.52
CBX4-201ENST00000269397 KIF14Q15058 1648 aa37.01■■■■□ 3.52
CBX4-201ENST00000269397 GPATCH8Q9UKJ3 1502 aaKnown RBP37■■■■□ 3.51
CBX4-201ENST00000269397 SALL2Q9Y467 1007 aaPredicted RBP36.98■■■■□ 3.51
CBX4-201ENST00000269397 ST20-MTHFSA0A0A6YYL1 179 aa36.98■■■■□ 3.51
CBX4-201ENST00000269397 MYT1LQ9UL68 1186 aa36.98■■■■□ 3.51
CBX4-201ENST00000269397 ANP32AP39687 249 aaKnown RBP36.96■■■■□ 3.51
CBX4-201ENST00000269397 ARID4BQ4LE39 1312 aaPredicted RBP36.96■■■■□ 3.51
CBX4-201ENST00000269397 ANKRD30AQ9BXX3 1397 aa36.96■■■■□ 3.51
CBX4-201ENST00000269397 PLB1Q6P1J6 1458 aa36.96■■■■□ 3.51
CBX4-201ENST00000269397 ANKRD50Q9ULJ7 1429 aa36.95■■■■□ 3.51
CBX4-201ENST00000269397 ADGBQ8N7X0 1667 aa36.95■■■■□ 3.5
CBX4-201ENST00000269397 NUP155O75694 1391 aa36.94■■■■□ 3.5
CBX4-201ENST00000269397 MRC2Q9UBG0 1479 aa36.92■■■■□ 3.5
CBX4-201ENST00000269397 IPO9Q96P70 1041 aaKnown RBP36.92■■■■□ 3.5
CBX4-201ENST00000269397 KIF15Q9NS87 1388 aa36.9■■■■□ 3.5
CBX4-201ENST00000269397 ROCK2O75116 1388 aaKnown RBP36.9■■■■□ 3.5
CBX4-201ENST00000269397 ADGRL2O95490 1459 aa36.89■■■■□ 3.5
CBX4-201ENST00000269397 DCAF11Q8TEB1 546 aa36.88■■■■□ 3.49
CBX4-201ENST00000269397 RALGAPBQ86X10 1494 aa36.88■■■■□ 3.49
CBX4-201ENST00000269397 ITSN2Q9NZM3 1697 aa36.87■■■■□ 3.49
CBX4-201ENST00000269397 UHRF1BP1Q6BDS2 1440 aa36.85■■■■□ 3.49
CBX4-201ENST00000269397 GRIN2AQ12879 1464 aa36.85■■■■□ 3.49
CBX4-201ENST00000269397 EXOC6Q8TAG9 804 aa36.84■■■■□ 3.49
CBX4-201ENST00000269397 MYBBP1AQ9BQG0 1328 aaKnown RBP36.84■■■■□ 3.49
CBX4-201ENST00000269397 LRPPRCP42704 1394 aaKnown RBP36.83■■■■□ 3.49
CBX4-201ENST00000269397 ZBTB47Q9UFB7 747 aaPredicted RBP36.83■■■■□ 3.49
CBX4-201ENST00000269397 CROCC2H7BZ55 1655 aa36.82■■■■□ 3.49
CBX4-201ENST00000269397 RRP1P56182 461 aaKnown RBP36.81■■■■□ 3.48
CBX4-201ENST00000269397 FBLN2P98095 1184 aa36.79■■■■□ 3.48
CBX4-201ENST00000269397 NPM2Q86SE8 214 aaKnown RBP36.79■■■■□ 3.48
CBX4-201ENST00000269397 BRD4O60885 1362 aaPredicted RBP36.79■■■■□ 3.48
CBX4-201ENST00000269397 IFT140Q96RY7 1462 aa36.78■■■■□ 3.48
CBX4-201ENST00000269397 RALBP1Q15311 655 aa36.76■■■■□ 3.48
CBX4-201ENST00000269397 RCAN3Q9UKA8 241 aa36.74■■■■□ 3.47
CBX4-201ENST00000269397 C9orf84Q5VXU9 1444 aa36.74■■■■□ 3.47
CBX4-201ENST00000269397 CHMP7Q8WUX9 453 aaPredicted RBP36.72■■■■□ 3.47
CBX4-201ENST00000269397 TSPY4P0CV99 314 aa36.7■■■■□ 3.46
CBX4-201ENST00000269397 TSPY10P0CW01 314 aa36.7■■■■□ 3.46
CBX4-201ENST00000269397 HNRNPMP52272 730 aaKnown RBP eCLIP36.69■■■■□ 3.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms