RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 KCNJ4P48050 445 aa24.44■■□□□ 1.5
UPF1-201ENST00000262803 ERICH6BQ5W0A0 696 aa24.44■■□□□ 1.5
UPF1-201ENST00000262803 RBM19Q9Y4C8 960 aaKnown RBP24.44■■□□□ 1.5
UPF1-201ENST00000262803 FOXD1Q16676 465 aa24.44■■□□□ 1.5
UPF1-201ENST00000262803 PKD2Q13563 968 aa24.43■■□□□ 1.5
UPF1-201ENST00000262803 SRPK2P78362 688 aaKnown RBP24.42■■□□□ 1.5
UPF1-201ENST00000262803 RTF1Q92541 710 aaKnown RBP24.42■■□□□ 1.5
UPF1-201ENST00000262803 MORC1Q86VD1 984 aa24.41■■□□□ 1.5
UPF1-201ENST00000262803 SMARCA2P51531 1590 aa24.4■■□□□ 1.5
UPF1-201ENST00000262803 TRHP20396 242 aaPredicted RBP24.4■■□□□ 1.5
UPF1-201ENST00000262803 EIF3AQ14152 1382 aaKnown RBP24.38■■□□□ 1.49
UPF1-201ENST00000262803 HSP90AB1P08238 724 aaKnown RBP24.38■■□□□ 1.49
UPF1-201ENST00000262803 IPO8O15397 1037 aaKnown RBP24.38■■□□□ 1.49
UPF1-201ENST00000262803 HDAC5Q9UQL6 1122 aa24.38■■□□□ 1.49
UPF1-201ENST00000262803 FMN1Q68DA7 1419 aa24.36■■□□□ 1.49
UPF1-201ENST00000262803 L1TD1Q5T7N2 865 aaKnown RBP24.36■■□□□ 1.49
UPF1-201ENST00000262803 EFCAB2Q5VUJ9 269 aa24.36■■□□□ 1.49
UPF1-201ENST00000262803 TPRNQ4KMQ1 711 aa24.36■■□□□ 1.49
UPF1-201ENST00000262803 MPHOSPH9Q99550 1183 aa24.36■■□□□ 1.49
UPF1-201ENST00000262803 RTN4Q9NQC3 1192 aaKnown RBP24.35■■□□□ 1.49
UPF1-201ENST00000262803 KTN1Q86UP2 1357 aaKnown RBP24.34■■□□□ 1.49
UPF1-201ENST00000262803 GOLGA6L4A6NEF3 574 aa24.33■■□□□ 1.48
UPF1-201ENST00000262803 DNTTIP2Q5QJE6 756 aaKnown RBP24.32■■□□□ 1.48
UPF1-201ENST00000262803 RSPH4AQ5TD94 716 aa24.32■■□□□ 1.48
UPF1-201ENST00000262803 HSCBQ8IWL3 235 aa24.31■■□□□ 1.48
UPF1-201ENST00000262803 PTMSP20962 102 aa24.31■■□□□ 1.48
UPF1-201ENST00000262803 ANKRD30AQ9BXX3 1397 aa24.3■■□□□ 1.48
UPF1-201ENST00000262803 RCAN3Q9UKA8 241 aa24.27■■□□□ 1.48
UPF1-201ENST00000262803 TMX4Q9H1E5 349 aaPredicted RBP24.26■■□□□ 1.47
UPF1-201ENST00000262803 RALBP1Q15311 655 aa24.25■■□□□ 1.47
UPF1-201ENST00000262803 SAFB2Q14151 953 aaKnown RBP eCLIP24.24■■□□□ 1.47
UPF1-201ENST00000262803 NAP1L5Q96NT1 182 aaPredicted RBP24.24■■□□□ 1.47
UPF1-201ENST00000262803 NUP155O75694 1391 aa24.24■■□□□ 1.47
UPF1-201ENST00000262803 MLECQ14165 292 aa24.24■■□□□ 1.47
UPF1-201ENST00000262803 ROCK2O75116 1388 aaKnown RBP24.23■■□□□ 1.47
UPF1-201ENST00000262803 DEKP35659 375 aaKnown RBP24.23■■□□□ 1.47
UPF1-201ENST00000262803 TDRD9Q8NDG6 1382 aaKnown RBP24.22■■□□□ 1.47
UPF1-201ENST00000262803 NAP1L2Q9ULW6 460 aaPredicted RBP24.21■■□□□ 1.47
UPF1-201ENST00000262803 GGT6Q6P531 493 aa24.21■■□□□ 1.47
UPF1-201ENST00000262803 L3MBTL2Q969R5 705 aa24.21■■□□□ 1.47
UPF1-201ENST00000262803 HTATSF1O43719 755 aaKnown RBP24.21■■□□□ 1.47
UPF1-201ENST00000262803 PLCB2Q00722 1185 aa24.2■■□□□ 1.46
UPF1-201ENST00000262803 KIAA1211Q6ZU35 1233 aa24.19■■□□□ 1.46
UPF1-201ENST00000262803 EID1Q9Y6B2 187 aa24.19■■□□□ 1.46
UPF1-201ENST00000262803 SPAG9O60271 1321 aaKnown RBP24.18■■□□□ 1.46
UPF1-201ENST00000262803 CHAF1AQ13111 956 aaPredicted RBP24.18■■□□□ 1.46
UPF1-201ENST00000262803 TSHZ2Q9NRE2 1034 aa24.18■■□□□ 1.46
UPF1-201ENST00000262803 TOP2AP11388 1531 aaKnown RBP24.17■■□□□ 1.46
UPF1-201ENST00000262803 WIZO95785 1651 aa24.17■■□□□ 1.46
UPF1-201ENST00000262803 TERF2IPQ9NYB0 399 aa24.16■■□□□ 1.46
UPF1-201ENST00000262803 TCERG1O14776 1098 aaKnown RBP24.15■■□□□ 1.46
UPF1-201ENST00000262803 SOX12O15370 315 aa24.15■■□□□ 1.46
UPF1-201ENST00000262803 SPRYD3Q8NCJ5 442 aa24.15■■□□□ 1.46
UPF1-201ENST00000262803 CSB-PGBD3P0DP91 1061 aa24.15■■□□□ 1.46
UPF1-201ENST00000262803 TULP1O00294 542 aaPredicted RBP24.14■■□□□ 1.46
UPF1-201ENST00000262803 LMOD3Q0VAK6 560 aa24.14■■□□□ 1.46
UPF1-201ENST00000262803 STK26Q9P289 416 aa24.13■■□□□ 1.45
UPF1-201ENST00000262803 GNL2Q13823 731 aaKnown RBP24.12■■□□□ 1.45
UPF1-201ENST00000262803 RAPGEF2Q9Y4G8 1499 aa24.12■■□□□ 1.45
UPF1-201ENST00000262803 GPATCH3Q96I76 525 aa24.12■■□□□ 1.45
UPF1-201ENST00000262803 FHOD3Q2V2M9 1422 aa24.12■■□□□ 1.45
UPF1-201ENST00000262803 U2AF1L5P0DN76 240 aaPredicted RBP24.12■■□□□ 1.45
UPF1-201ENST00000262803 U2AF1Q01081 240 aaKnown RBP eCLIP24.12■■□□□ 1.454e-10■■■■■ 35.3
UPF1-201ENST00000262803 CCDC34Q96HJ3 373 aa24.12■■□□□ 1.45
UPF1-201ENST00000262803 RWDD1Q9H446 243 aaPredicted RBP24.12■■□□□ 1.45
UPF1-201ENST00000262803 STK31Q9BXU1 1019 aa24.1■■□□□ 1.45
UPF1-201ENST00000262803 CCDC18Q5T9S5 1454 aa24.1■■□□□ 1.45
UPF1-201ENST00000262803 DHX57Q6P158 1386 aaKnown RBP24.09■■□□□ 1.45
UPF1-201ENST00000262803 HMMRO75330 724 aa24.07■■□□□ 1.44
UPF1-201ENST00000262803 NLRP13Q86W25 1043 aa24.06■■□□□ 1.44
UPF1-201ENST00000262803 UACAQ9BZF9 1416 aa24.06■■□□□ 1.44
UPF1-201ENST00000262803 TAOK2Q9UL54 1235 aa24.06■■□□□ 1.44
UPF1-201ENST00000262803 KIAA2012Q0VF49 1180 aa24.05■■□□□ 1.44
UPF1-201ENST00000262803 PAK3O75914 559 aaPredicted RBP24.05■■□□□ 1.44
UPF1-201ENST00000262803 PMFBP1Q8TBY8 1022 aa24.04■■□□□ 1.44
UPF1-201ENST00000262803 PHLDB1Q86UU1 1377 aa24.04■■□□□ 1.44
UPF1-201ENST00000262803 ITPRIPQ8IWB1 547 aa24.02■■□□□ 1.44
UPF1-201ENST00000262803 ISY1Q9ULR0 285 aaKnown RBP24.02■■□□□ 1.44
UPF1-201ENST00000262803 GBP4Q96PP9 640 aa24.02■■□□□ 1.44
UPF1-201ENST00000262803 APBB1O00213 710 aa24.02■■□□□ 1.44
UPF1-201ENST00000262803 PDE3BQ13370 1112 aa24■■□□□ 1.43
UPF1-201ENST00000262803 SLKQ9H2G2 1235 aaPredicted RBP24■■□□□ 1.43
UPF1-201ENST00000262803 HNRNPMP52272 730 aaKnown RBP eCLIP24■■□□□ 1.438e-16■■■■■ 52.8
UPF1-201ENST00000262803 SYAP1Q96A49 352 aaPredicted RBP24■■□□□ 1.43
UPF1-201ENST00000262803 CLSTN1O94985 981 aa23.98■■□□□ 1.43
UPF1-201ENST00000262803 CHMP4CQ96CF2 233 aa23.98■■□□□ 1.43
UPF1-201ENST00000262803 TPM4P67936 248 aa23.98■■□□□ 1.43
UPF1-201ENST00000262803 IPO9Q96P70 1041 aaKnown RBP23.97■■□□□ 1.43
UPF1-201ENST00000262803 CSPP1Q1MSJ5 1256 aa23.97■■□□□ 1.43
UPF1-201ENST00000262803 RUSC2Q8N2Y8 1516 aa23.97■■□□□ 1.43
UPF1-201ENST00000262803 GORABQ5T7V8 394 aa23.97■■□□□ 1.43
UPF1-201ENST00000262803 CADPSQ9ULU8 1353 aa23.96■■□□□ 1.43
UPF1-201ENST00000262803 MSNP26038 577 aaKnown RBP23.96■■□□□ 1.43
UPF1-201ENST00000262803 KIF3BO15066 747 aa23.96■■□□□ 1.43
UPF1-201ENST00000262803 TAF7LQ5H9L4 462 aa23.95■■□□□ 1.42
UPF1-201ENST00000262803 DRC7Q8IY82 874 aa23.94■■□□□ 1.42
UPF1-201ENST00000262803 CCDC146Q8IYE0 955 aa23.93■■□□□ 1.42
UPF1-201ENST00000262803 WASHC2CQ9Y4E1 1318 aa23.93■■□□□ 1.42
UPF1-201ENST00000262803 SMC4Q9NTJ3 1288 aa23.92■■□□□ 1.42
UPF1-201ENST00000262803 NGDNQ8NEJ9 315 aaKnown RBP23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 142.5 ms