RNA–Protein interactions for RNA: ENST00000261584.8

PALB2-201, Transcript of partner and localizer of BRCA2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PALB2, Length 4,003 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-201ENST00000261584 BRPF3Q9ULD4 1205 aa13.29□□□□□ -0.28
PALB2-201ENST00000261584 ZBED9Q6R2W3 1325 aa13.28□□□□□ -0.28
PALB2-201ENST00000261584 TPRNQ4KMQ1 711 aa13.26□□□□□ -0.29
PALB2-201ENST00000261584 CRBNQ96SW2 442 aa13.26□□□□□ -0.29
PALB2-201ENST00000261584 LRRC9Q6ZRR7 1453 aa13.25□□□□□ -0.29
PALB2-201ENST00000261584 FMN1Q68DA7 1419 aa13.25□□□□□ -0.29
PALB2-201ENST00000261584 CCDC7Q96M83 1385 aa13.24□□□□□ -0.29
PALB2-201ENST00000261584 RAD54L2Q9Y4B4 1467 aa13.24□□□□□ -0.29
PALB2-201ENST00000261584 PPM1GO15355 546 aaPredicted RBP13.23□□□□□ -0.29
PALB2-201ENST00000261584 HSP90AA1P07900 732 aaKnown RBP13.23□□□□□ -0.29
PALB2-201ENST00000261584 CHMP7Q8WUX9 453 aaPredicted RBP13.23□□□□□ -0.29
PALB2-201ENST00000261584 CLUAP1Q96AJ1 413 aa13.23□□□□□ -0.29
PALB2-201ENST00000261584 RRP1P56182 461 aaKnown RBP13.22□□□□□ -0.29
PALB2-201ENST00000261584 BCL2L13Q9BXK5 485 aa13.22□□□□□ -0.29
PALB2-201ENST00000261584 KNSTRNQ9Y448 316 aa13.22□□□□□ -0.29
PALB2-201ENST00000261584 SLC24A1O60721 1099 aa13.22□□□□□ -0.29
PALB2-201ENST00000261584 ZBTB7CA1YPR0 619 aa13.21□□□□□ -0.29
PALB2-201ENST00000261584 PRXQ9BXM0 1461 aa13.21□□□□□ -0.29
PALB2-201ENST00000261584 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.21□□□□□ -0.3
PALB2-201ENST00000261584 HNRNPMP52272 730 aaKnown RBP eCLIP13.19□□□□□ -0.3
PALB2-201ENST00000261584 DDRGK1Q96HY6 314 aa13.19□□□□□ -0.3
PALB2-201ENST00000261584 FGD6Q6ZV73 1430 aa13.19□□□□□ -0.3
PALB2-201ENST00000261584 RRP7AQ9Y3A4 280 aaKnown RBP13.19□□□□□ -0.3
PALB2-201ENST00000261584 MAPKBP1O60336 1514 aa13.19□□□□□ -0.3
PALB2-201ENST00000261584 NUP155O75694 1391 aa13.19□□□□□ -0.3
PALB2-201ENST00000261584 ERICH6BQ5W0A0 696 aa13.18□□□□□ -0.3
PALB2-201ENST00000261584 UPF2Q9HAU5 1272 aaKnown RBP13.18□□□□□ -0.3
PALB2-201ENST00000261584 ARID3AQ99856 593 aa13.18□□□□□ -0.3
PALB2-201ENST00000261584 PLEKHD1A6NEE1 506 aa13.17□□□□□ -0.3
PALB2-201ENST00000261584 TCERG1O14776 1098 aaKnown RBP13.17□□□□□ -0.3
PALB2-201ENST00000261584 NAP1L5Q96NT1 182 aaPredicted RBP13.17□□□□□ -0.3
PALB2-201ENST00000261584 USP47Q96K76 1375 aa13.17□□□□□ -0.3
PALB2-201ENST00000261584 SAFB2Q14151 953 aaKnown RBP eCLIP13.17□□□□□ -0.3
PALB2-201ENST00000261584 PANK3Q9H999 370 aa13.16□□□□□ -0.3
PALB2-201ENST00000261584 PRKCSHP14314 528 aaPredicted RBP13.16□□□□□ -0.3
PALB2-201ENST00000261584 HMGXB3Q12766 1538 aa13.15□□□□□ -0.3
PALB2-201ENST00000261584 CNTLNQ9NXG0 1405 aa13.15□□□□□ -0.3
PALB2-201ENST00000261584 CFTRP13569 1480 aa13.15□□□□□ -0.3
PALB2-201ENST00000261584 ROCK2O75116 1388 aaKnown RBP13.14□□□□□ -0.31
PALB2-201ENST00000261584 C20orf194Q5TEA3 1177 aa13.14□□□□□ -0.31
PALB2-201ENST00000261584 FOXD4L1Q9NU39 408 aa13.14□□□□□ -0.31
PALB2-201ENST00000261584 UACAQ9BZF9 1416 aa13.13□□□□□ -0.31
PALB2-201ENST00000261584 FRAT2O75474 233 aaPredicted RBP13.13□□□□□ -0.31
PALB2-201ENST00000261584 FGD5Q6ZNL6 1462 aa13.12□□□□□ -0.31
PALB2-201ENST00000261584 NFKBIBQ15653 356 aa13.12□□□□□ -0.31
PALB2-201ENST00000261584 NBPF1Q3BBV0 1214 aa13.12□□□□□ -0.31
PALB2-201ENST00000261584 PNISRQ8TF01 805 aaKnown RBP13.11□□□□□ -0.31
PALB2-201ENST00000261584 AQRO60306 1485 aaKnown RBP eCLIP13.11□□□□□ -0.312e-7■□□□□ 8.7
PALB2-201ENST00000261584 CUX1P39880 1505 aa13.11□□□□□ -0.31
PALB2-201ENST00000261584 GSE1Q14687 1217 aa13.11□□□□□ -0.31
PALB2-201ENST00000261584 NLRP13Q86W25 1043 aa13.1□□□□□ -0.31
PALB2-201ENST00000261584 KTN1Q86UP2 1357 aaKnown RBP13.1□□□□□ -0.31
PALB2-201ENST00000261584 PTPRKQ15262 1439 aa13.1□□□□□ -0.31
PALB2-201ENST00000261584 NCLP19338 710 aaKnown RBP13.1□□□□□ -0.31
PALB2-201ENST00000261584 NUTM2DQ5VT03 806 aaPredicted RBP13.1□□□□□ -0.31
PALB2-201ENST00000261584 COG6Q9Y2V7 657 aa13.1□□□□□ -0.31
PALB2-201ENST00000261584 PLEKHG5O94827 1062 aa13.1□□□□□ -0.31
PALB2-201ENST00000261584 NCAPD3P42695 1498 aa13.09□□□□□ -0.31
PALB2-201ENST00000261584 DNAJC5BQ9UF47 199 aa13.09□□□□□ -0.31
PALB2-201ENST00000261584 CADPSQ9ULU8 1353 aa13.09□□□□□ -0.31
PALB2-201ENST00000261584 PLPPR3Q6T4P5 718 aa13.09□□□□□ -0.31
PALB2-201ENST00000261584 APAF1O14727 1248 aa13.08□□□□□ -0.32
PALB2-201ENST00000261584 MYBBP1AQ9BQG0 1328 aaKnown RBP13.07□□□□□ -0.32
PALB2-201ENST00000261584 ADAMTS8Q9UP79 889 aa13.07□□□□□ -0.32
PALB2-201ENST00000261584 U2SURPO15042 1029 aaKnown RBP13.07□□□□□ -0.32
PALB2-201ENST00000261584 NCOA2Q15596 1464 aa13.06□□□□□ -0.32
PALB2-201ENST00000261584 PRDM2Q13029 1718 aa13.06□□□□□ -0.32
PALB2-201ENST00000261584 TMF1P82094 1093 aa13.06□□□□□ -0.32
PALB2-201ENST00000261584 BECN1Q14457 450 aa13.06□□□□□ -0.32
PALB2-201ENST00000261584 NAIPQ13075 1403 aa13.05□□□□□ -0.32
PALB2-201ENST00000261584 PDS5BQ9NTI5 1447 aa13.05□□□□□ -0.32
PALB2-201ENST00000261584 MFAP1P55081 439 aaKnown RBP13.05□□□□□ -0.32
PALB2-201ENST00000261584 RALBP1Q15311 655 aa13.05□□□□□ -0.32
PALB2-201ENST00000261584 FTSJ3Q8IY81 847 aaKnown RBP13.05□□□□□ -0.32
PALB2-201ENST00000261584 TIAM1Q13009 1591 aa13.05□□□□□ -0.32
PALB2-201ENST00000261584 APBB1O00213 710 aa13.05□□□□□ -0.32
PALB2-201ENST00000261584 BACH2Q9BYV9 841 aa13.04□□□□□ -0.32
PALB2-201ENST00000261584 PANK1Q8TE04 598 aa13.04□□□□□ -0.32
PALB2-201ENST00000261584 MYOM3Q5VTT5 1437 aa13.04□□□□□ -0.32
PALB2-201ENST00000261584 GOLGA2Q08379 1002 aa13.03□□□□□ -0.32
PALB2-201ENST00000261584 BCAR3O75815 825 aa13.03□□□□□ -0.32
PALB2-201ENST00000261584 KIF15Q9NS87 1388 aa13.01□□□□□ -0.33
PALB2-201ENST00000261584 TOP2BQ02880 1626 aa13.01□□□□□ -0.33
PALB2-201ENST00000261584 BIVM-ERCC5R4GMW8 1640 aa13□□□□□ -0.33
PALB2-201ENST00000261584 TRIM44Q96DX7 344 aaPredicted RBP13□□□□□ -0.33
PALB2-201ENST00000261584 ERICH3Q5RHP9 1530 aa13□□□□□ -0.33
PALB2-201ENST00000261584 FAM161AQ3B820 660 aa12.99□□□□□ -0.33
PALB2-201ENST00000261584 HFM1A2PYH4 1435 aa12.98□□□□□ -0.33
PALB2-201ENST00000261584 NESP48681 1621 aa12.98□□□□□ -0.33
PALB2-201ENST00000261584 FANCD2Q9BXW9 1451 aa12.98□□□□□ -0.33
PALB2-201ENST00000261584 ELL2O00472 640 aaPredicted RBP12.97□□□□□ -0.33
PALB2-201ENST00000261584 STK26Q9P289 416 aa12.97□□□□□ -0.33
PALB2-201ENST00000261584 SOX12O15370 315 aa12.96□□□□□ -0.33
PALB2-201ENST00000261584 U2AF1L5P0DN76 240 aaPredicted RBP12.96□□□□□ -0.33
PALB2-201ENST00000261584 U2AF1Q01081 240 aaKnown RBP eCLIP12.96□□□□□ -0.33
PALB2-201ENST00000261584 POGKQ9P215 609 aa12.96□□□□□ -0.33
PALB2-201ENST00000261584 PCF11O94913 1555 aaKnown RBP12.96□□□□□ -0.34
PALB2-201ENST00000261584 CASKIN1Q8WXD9 1431 aa12.96□□□□□ -0.34
PALB2-201ENST00000261584 FOXD4L5Q5VV16 416 aaPredicted RBP12.95□□□□□ -0.34
PALB2-201ENST00000261584 MORC1Q86VD1 984 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms