RNA–Protein interactions for RNA: ENST00000257290.9

PDGFRA-201, Transcript of platelet derived growth factor receptor alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFRA, Length 6,576 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-201ENST00000257290 AEBP1Q8IUX7 1158 aa8.68□□□□□ -1.02
PDGFRA-201ENST00000257290 FAM13BQ9NYF5 915 aa8.68□□□□□ -1.02
PDGFRA-201ENST00000257290 CHAF1AQ13111 956 aaPredicted RBP8.68□□□□□ -1.02
PDGFRA-201ENST00000257290 GOLGA6L1Q8N7Z2 621 aa8.67□□□□□ -1.02
PDGFRA-201ENST00000257290 ABCC8Q09428 1581 aa8.67□□□□□ -1.02
PDGFRA-201ENST00000257290 CALD1Q05682 793 aaKnown RBP8.67□□□□□ -1.02
PDGFRA-201ENST00000257290 ERCC6Q03468 1493 aa8.67□□□□□ -1.02
PDGFRA-201ENST00000257290 PDS5BQ9NTI5 1447 aa8.66□□□□□ -1.02
PDGFRA-201ENST00000257290 TRIM52Q96A61 297 aa8.66□□□□□ -1.02
PDGFRA-201ENST00000257290 SSR1P43307 286 aaKnown RBP8.66□□□□□ -1.02
PDGFRA-201ENST00000257290 CFAP44Q96MT7 982 aa8.66□□□□□ -1.02
PDGFRA-201ENST00000257290 MAPK8IP2Q13387 824 aaPredicted RBP8.65□□□□□ -1.02
PDGFRA-201ENST00000257290 TSPYL1Q9H0U9 437 aa8.65□□□□□ -1.02
PDGFRA-201ENST00000257290 CNPY4Q8N129 248 aa8.65□□□□□ -1.03
PDGFRA-201ENST00000257290 RGS3P49796 1198 aa8.64□□□□□ -1.03
PDGFRA-201ENST00000257290 HNRNPUQ00839 825 aaKnown RBP eCLIP8.64□□□□□ -1.03
PDGFRA-201ENST00000257290 CADPSQ9ULU8 1353 aa8.64□□□□□ -1.03
PDGFRA-201ENST00000257290 AEBP2Q6ZN18 517 aaPredicted RBP8.64□□□□□ -1.03
PDGFRA-201ENST00000257290 CHMP7Q8WUX9 453 aaPredicted RBP8.64□□□□□ -1.03
PDGFRA-201ENST00000257290 SOGA1O94964 1423 aa8.63□□□□□ -1.03
PDGFRA-201ENST00000257290 CUX2O14529 1486 aa8.63□□□□□ -1.03
PDGFRA-201ENST00000257290 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.63□□□□□ -1.03
PDGFRA-201ENST00000257290 ZNF622Q969S3 477 aaKnown RBP eCLIP8.63□□□□□ -1.03
PDGFRA-201ENST00000257290 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.62□□□□□ -1.03
PDGFRA-201ENST00000257290 NCAPD3P42695 1498 aa8.62□□□□□ -1.03
PDGFRA-201ENST00000257290 RSPH4AQ5TD94 716 aa8.62□□□□□ -1.03
PDGFRA-201ENST00000257290 ZFP91Q96JP5 570 aaPredicted RBP8.62□□□□□ -1.03
PDGFRA-201ENST00000257290 MYH16Q9H6N6 1097 aa8.61□□□□□ -1.03
PDGFRA-201ENST00000257290 EIF4G1Q04637 1599 aaKnown RBP8.61□□□□□ -1.03
PDGFRA-201ENST00000257290 PRDM10Q9NQV6 1147 aa8.61□□□□□ -1.03
PDGFRA-201ENST00000257290 E9PSI1 815 aa8.6□□□□□ -1.03
PDGFRA-201ENST00000257290 SETQ01105 290 aaPredicted RBP8.59□□□□□ -1.03
PDGFRA-201ENST00000257290 DNAJC2Q99543 621 aaKnown RBP8.59□□□□□ -1.03
PDGFRA-201ENST00000257290 ZHX1Q9UKY1 873 aaPredicted RBP8.59□□□□□ -1.03
PDGFRA-201ENST00000257290 HDAC5Q9UQL6 1122 aa8.59□□□□□ -1.03
PDGFRA-201ENST00000257290 CARMIL1Q5VZK9 1371 aa8.59□□□□□ -1.03
PDGFRA-201ENST00000257290 TEX2Q8IWB9 1127 aa8.59□□□□□ -1.03
PDGFRA-201ENST00000257290 ARID3CA6NKF2 412 aa8.59□□□□□ -1.03
PDGFRA-201ENST00000257290 MTUS2Q5JR59 1369 aa8.58□□□□□ -1.04
PDGFRA-201ENST00000257290 TCERG1O14776 1098 aaKnown RBP8.58□□□□□ -1.04
PDGFRA-201ENST00000257290 CNKSR2Q8WXI2 1034 aa8.57□□□□□ -1.04
PDGFRA-201ENST00000257290 NOM1Q5C9Z4 860 aaKnown RBP8.57□□□□□ -1.04
PDGFRA-201ENST00000257290 ZNF592Q92610 1267 aa8.56□□□□□ -1.04
PDGFRA-201ENST00000257290 HMGXB3Q12766 1538 aa8.56□□□□□ -1.04
PDGFRA-201ENST00000257290 FHAD1B1AJZ9 1412 aa8.55□□□□□ -1.04
PDGFRA-201ENST00000257290 ZNF777Q9ULD5 760 aaPredicted RBP8.55□□□□□ -1.04
PDGFRA-201ENST00000257290 PAIP2Q9BPZ3 127 aaKnown RBP8.55□□□□□ -1.04
PDGFRA-201ENST00000257290 MSH5O43196 834 aa8.54□□□□□ -1.04
PDGFRA-201ENST00000257290 CSPP1Q1MSJ5 1256 aa8.54□□□□□ -1.04
PDGFRA-201ENST00000257290 TICAM2Q86XR7 235 aa8.54□□□□□ -1.04
PDGFRA-201ENST00000257290 FANCD2Q9BXW9 1451 aa8.54□□□□□ -1.04
PDGFRA-201ENST00000257290 NEFHP12036 1026 aa8.54□□□□□ -1.04
PDGFRA-201ENST00000257290 BICRAQ9NZM4 1560 aa8.54□□□□□ -1.04
PDGFRA-201ENST00000257290 C11orf95C9JLR9 678 aaPredicted RBP8.53□□□□□ -1.04
PDGFRA-201ENST00000257290 RBM28Q9NW13 759 aaKnown RBP8.53□□□□□ -1.04
PDGFRA-201ENST00000257290 LMOD3Q0VAK6 560 aa8.53□□□□□ -1.04
PDGFRA-201ENST00000257290 SMAP1Q8IYB5 467 aaPredicted RBP8.53□□□□□ -1.04
PDGFRA-201ENST00000257290 SAMD1Q6SPF0 538 aaPredicted RBP8.52□□□□□ -1.04
PDGFRA-201ENST00000257290 KIAA2012Q0VF49 1180 aa8.52□□□□□ -1.05
PDGFRA-201ENST00000257290 FRAT1Q92837 279 aaPredicted RBP8.52□□□□□ -1.05
PDGFRA-201ENST00000257290 ZBTB7CA1YPR0 619 aa8.52□□□□□ -1.05
PDGFRA-201ENST00000257290 NPM1P06748 294 aaKnown RBP eCLIP8.52□□□□□ -1.05
PDGFRA-201ENST00000257290 CGNQ9P2M7 1197 aaKnown RBP8.52□□□□□ -1.05
PDGFRA-201ENST00000257290 LETM1O95202 739 aaPredicted RBP8.51□□□□□ -1.05
PDGFRA-201ENST00000257290 B4GALNT3Q6L9W6 998 aa8.51□□□□□ -1.05
PDGFRA-201ENST00000257290 STK11IPQ8N1F8 1099 aa8.51□□□□□ -1.05
PDGFRA-201ENST00000257290 GPATCH11Q8N954 259 aa8.51□□□□□ -1.05
PDGFRA-201ENST00000257290 VGLL3A8MV65 326 aa8.51□□□□□ -1.05
PDGFRA-201ENST00000257290 MCCP23508 829 aa8.51□□□□□ -1.05
PDGFRA-201ENST00000257290 VPS8Q8N3P4 1428 aa8.51□□□□□ -1.05
PDGFRA-201ENST00000257290 RAPGEF2Q9Y4G8 1499 aa8.51□□□□□ -1.05
PDGFRA-201ENST00000257290 DEF6Q9H4E7 631 aa8.49□□□□□ -1.05
PDGFRA-201ENST00000257290 SECISBP2LQ93073 1101 aaKnown RBP8.49□□□□□ -1.05
PDGFRA-201ENST00000257290 ARID4AP29374 1257 aaPredicted RBP8.48□□□□□ -1.05
PDGFRA-201ENST00000257290 CWC15Q9P013 229 aaKnown RBP8.48□□□□□ -1.05
PDGFRA-201ENST00000257290 GTPBP4Q9BZE4 634 aaKnown RBP8.48□□□□□ -1.05
PDGFRA-201ENST00000257290 BANK1Q8NDB2 785 aa8.47□□□□□ -1.05
PDGFRA-201ENST00000257290 KIF3AQ9Y496 699 aa8.47□□□□□ -1.05
PDGFRA-201ENST00000257290 TEX35Q5T0J7 233 aa8.47□□□□□ -1.05
PDGFRA-201ENST00000257290 CC2D2AQ9P2K1 1620 aa8.47□□□□□ -1.05
PDGFRA-201ENST00000257290 KIF20AO95235 890 aa8.47□□□□□ -1.05
PDGFRA-201ENST00000257290 MRVI1Q9Y6F6 885 aa8.47□□□□□ -1.05
PDGFRA-201ENST00000257290 CFTRP13569 1480 aa8.46□□□□□ -1.05
PDGFRA-201ENST00000257290 PLEKHD1A6NEE1 506 aa8.46□□□□□ -1.05
PDGFRA-201ENST00000257290 PHF14O94880 888 aa8.46□□□□□ -1.05
PDGFRA-201ENST00000257290 PPP4R3BQ5MIZ7 849 aa8.46□□□□□ -1.05
PDGFRA-201ENST00000257290 KIAA1211Q6ZU35 1233 aa8.46□□□□□ -1.05
PDGFRA-201ENST00000257290 CALCOCO1Q9P1Z2 691 aa8.46□□□□□ -1.05
PDGFRA-201ENST00000257290 TDO2P48775 406 aa8.46□□□□□ -1.05
PDGFRA-201ENST00000257290 R3HCC1Q9Y3T6 440 aaKnown RBP8.46□□□□□ -1.05
PDGFRA-201ENST00000257290 TONSLQ96HA7 1378 aa8.46□□□□□ -1.06
PDGFRA-201ENST00000257290 GTF2A1P52655 376 aaPredicted RBP8.46□□□□□ -1.06
PDGFRA-201ENST00000257290 GOLIM4O00461 696 aa8.45□□□□□ -1.06
PDGFRA-201ENST00000257290 GPS2Q13227 327 aa8.45□□□□□ -1.06
PDGFRA-201ENST00000257290 PEG3Q9GZU2 1588 aa8.45□□□□□ -1.06
PDGFRA-201ENST00000257290 RALBP1Q15311 655 aa8.45□□□□□ -1.06
PDGFRA-201ENST00000257290 GZF1Q9H116 711 aaPredicted RBP8.45□□□□□ -1.06
PDGFRA-201ENST00000257290 TDRD9Q8NDG6 1382 aaKnown RBP8.45□□□□□ -1.06
PDGFRA-201ENST00000257290 KCNJ4P48050 445 aa8.45□□□□□ -1.06
PDGFRA-201ENST00000257290 CASC1Q6TDU7 716 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms