RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 RRP7BPQ9NSQ0 103 aa19.37■□□□□ 0.69
HIF3A-201ENST00000244302 CAMSAP2Q08AD1 1489 aa19.34■□□□□ 0.69
HIF3A-201ENST00000244302 CCER1Q8TC90 406 aaPredicted RBP19.34■□□□□ 0.69
HIF3A-201ENST00000244302 ABCC5O15440 1437 aa19.33■□□□□ 0.68
HIF3A-201ENST00000244302 CDC42BPBQ9Y5S2 1711 aa19.32■□□□□ 0.68
HIF3A-201ENST00000244302 RAB3GAP2Q9H2M9 1393 aa19.31■□□□□ 0.68
HIF3A-201ENST00000244302 DAPK1P53355 1430 aa19.29■□□□□ 0.68
HIF3A-201ENST00000244302 PLCH2O75038 1416 aa19.28■□□□□ 0.68
HIF3A-201ENST00000244302 ARHGAP5Q13017 1502 aa19.28■□□□□ 0.68
HIF3A-201ENST00000244302 ITSN2Q9NZM3 1697 aa19.28■□□□□ 0.68
HIF3A-201ENST00000244302 SETD5Q9C0A6 1442 aa19.27■□□□□ 0.67
HIF3A-201ENST00000244302 SAMD9LQ8IVG5 1584 aa19.26■□□□□ 0.67
HIF3A-201ENST00000244302 PREX2Q70Z35 1606 aa19.25■□□□□ 0.67
HIF3A-201ENST00000244302 EFCAB2Q5VUJ9 269 aa19.24■□□□□ 0.67
HIF3A-201ENST00000244302 ARHGEF12Q9NZN5 1544 aa19.24■□□□□ 0.67
HIF3A-201ENST00000244302 MBD5Q9P267 1494 aa19.24■□□□□ 0.67
HIF3A-201ENST00000244302 NAIPQ13075 1403 aa19.23■□□□□ 0.67
HIF3A-201ENST00000244302 MYO5CQ9NQX4 1742 aa19.22■□□□□ 0.67
HIF3A-201ENST00000244302 DNMT1P26358 1616 aaKnown RBP19.21■□□□□ 0.67
HIF3A-201ENST00000244302 FAM69CQ0P6D2 419 aa19.21■□□□□ 0.67
HIF3A-201ENST00000244302 AFAP1Q8N556 730 aa19.21■□□□□ 0.67
HIF3A-201ENST00000244302 SYCP2Q9BX26 1530 aa19.2■□□□□ 0.66
HIF3A-201ENST00000244302 ABCA9Q8IUA7 1624 aa19.19■□□□□ 0.66
HIF3A-201ENST00000244302 HFM1A2PYH4 1435 aa19.19■□□□□ 0.66
HIF3A-201ENST00000244302 CD109Q6YHK3 1445 aa19.19■□□□□ 0.66
HIF3A-201ENST00000244302 KDM6BO15054 1643 aa19.18■□□□□ 0.66
HIF3A-201ENST00000244302 DHX57Q6P158 1386 aaKnown RBP19.18■□□□□ 0.66
HIF3A-201ENST00000244302 ZEB1P37275 1124 aaPredicted RBP19.18■□□□□ 0.66
HIF3A-201ENST00000244302 AKNAQ7Z591 1439 aa19.18■□□□□ 0.66
HIF3A-201ENST00000244302 MAPKBP1O60336 1514 aa19.17■□□□□ 0.66
HIF3A-201ENST00000244302 TRAPPC8Q9Y2L5 1435 aa19.17■□□□□ 0.66
HIF3A-201ENST00000244302 TSPY4P0CV99 314 aa19.17■□□□□ 0.66
HIF3A-201ENST00000244302 TSPY10P0CW01 314 aa19.17■□□□□ 0.66
HIF3A-201ENST00000244302 FANCAO15360 1455 aa19.16■□□□□ 0.66
HIF3A-201ENST00000244302 DNAJC5Q9H3Z4 198 aa19.16■□□□□ 0.66
HIF3A-201ENST00000244302 NCOA1Q15788 1441 aa19.15■□□□□ 0.66
HIF3A-201ENST00000244302 C9orf84Q5VXU9 1444 aa19.14■□□□□ 0.65
HIF3A-201ENST00000244302 CCDC141Q6ZP82 1450 aa19.11■□□□□ 0.65
HIF3A-201ENST00000244302 SCAPERQ9BY12 1400 aa19.11■□□□□ 0.65
HIF3A-201ENST00000244302 KIAA1107Q9UPP5 1409 aa19.11■□□□□ 0.65
HIF3A-201ENST00000244302 ROCK1Q13464 1354 aa19.11■□□□□ 0.65
HIF3A-201ENST00000244302 TRIM52Q96A61 297 aa19.1■□□□□ 0.65
HIF3A-201ENST00000244302 ABCC1P33527 1531 aa19.09■□□□□ 0.65
HIF3A-201ENST00000244302 RAPGEF3O95398 923 aa19.08■□□□□ 0.64
HIF3A-201ENST00000244302 ARHGEF5Q12774 1597 aa19.08■□□□□ 0.64
HIF3A-201ENST00000244302 ANKRD30AQ9BXX3 1397 aa19.08■□□□□ 0.64
HIF3A-201ENST00000244302 ADGRL1O94910 1474 aa19.08■□□□□ 0.64
HIF3A-201ENST00000244302 RSPH4AQ5TD94 716 aa19.07■□□□□ 0.64
HIF3A-201ENST00000244302 CROCC2H7BZ55 1655 aa19.07■□□□□ 0.64
HIF3A-201ENST00000244302 ARAP3Q8WWN8 1544 aa19.06■□□□□ 0.64
HIF3A-201ENST00000244302 DIP2BQ9P265 1576 aa19.06■□□□□ 0.64
HIF3A-201ENST00000244302 FOXD1Q16676 465 aa19.05■□□□□ 0.64
HIF3A-201ENST00000244302 KIF15Q9NS87 1388 aa19.05■□□□□ 0.64
HIF3A-201ENST00000244302 ADGRL2O95490 1459 aa19.05■□□□□ 0.64
HIF3A-201ENST00000244302 PLEKHH2Q8IVE3 1493 aa19.04■□□□□ 0.64
HIF3A-201ENST00000244302 MYT1LQ9UL68 1186 aa19.04■□□□□ 0.64
HIF3A-201ENST00000244302 SPAG9O60271 1321 aaKnown RBP19.04■□□□□ 0.64
HIF3A-201ENST00000244302 SIN3AQ96ST3 1273 aa19.03■□□□□ 0.64
HIF3A-201ENST00000244302 SHANK2Q9UPX8 1470 aa19.03■□□□□ 0.64
HIF3A-201ENST00000244302 TSPOAP1O95153 1857 aa19.03■□□□□ 0.64
HIF3A-201ENST00000244302 GCC2Q8IWJ2 1684 aa19.02■□□□□ 0.64
HIF3A-201ENST00000244302 ANKRD50Q9ULJ7 1429 aa19.01■□□□□ 0.63
HIF3A-201ENST00000244302 MAP3K4Q9Y6R4 1608 aa19.01■□□□□ 0.63
HIF3A-201ENST00000244302 GLI2P10070 1586 aa19■□□□□ 0.63
HIF3A-201ENST00000244302 ADGBQ8N7X0 1667 aa18.99■□□□□ 0.63
HIF3A-201ENST00000244302 DENND4BO75064 1496 aaPredicted RBP18.99■□□□□ 0.63
HIF3A-201ENST00000244302 MPHOSPH9Q99550 1183 aa18.98■□□□□ 0.63
HIF3A-201ENST00000244302 NEUROD1Q13562 356 aa18.97■□□□□ 0.63
HIF3A-201ENST00000244302 KIF13AQ9H1H9 1805 aa18.96■□□□□ 0.62
HIF3A-201ENST00000244302 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.95■□□□□ 0.62
HIF3A-201ENST00000244302 TRHP20396 242 aaPredicted RBP18.95■□□□□ 0.62
HIF3A-201ENST00000244302 PPRC1Q5VV67 1664 aaKnown RBP18.94■□□□□ 0.62
HIF3A-201ENST00000244302 MAST1Q9Y2H9 1570 aa18.93■□□□□ 0.62
HIF3A-201ENST00000244302 SLC4A1APQ9BWU0 796 aaKnown RBP18.93■□□□□ 0.62
HIF3A-201ENST00000244302 NEO1Q92859 1461 aa18.93■□□□□ 0.62
HIF3A-201ENST00000244302 POGZQ7Z3K3 1410 aa18.92■□□□□ 0.62
HIF3A-201ENST00000244302 ZFYVE16Q7Z3T8 1539 aa18.92■□□□□ 0.62
HIF3A-201ENST00000244302 NUP155O75694 1391 aa18.92■□□□□ 0.62
HIF3A-201ENST00000244302 COL17A1Q9UMD9 1497 aaPredicted RBP18.91■□□□□ 0.62
HIF3A-201ENST00000244302 ZNF518AQ6AHZ1 1483 aa18.89■□□□□ 0.62
HIF3A-201ENST00000244302 ATP7AQ04656 1500 aa18.89■□□□□ 0.61
HIF3A-201ENST00000244302 PZPP20742 1482 aa18.89■□□□□ 0.61
HIF3A-201ENST00000244302 RTEL1-TNFRSF6BF6WH68 1400 aa18.89■□□□□ 0.61
HIF3A-201ENST00000244302 KIDINS220Q9ULH0 1771 aa18.87■□□□□ 0.61
HIF3A-201ENST00000244302 PLXNC1O60486 1568 aa18.87■□□□□ 0.61
HIF3A-201ENST00000244302 PKD2Q13563 968 aa18.86■□□□□ 0.61
HIF3A-201ENST00000244302 CLSPNQ9HAW4 1339 aa18.86■□□□□ 0.61
HIF3A-201ENST00000244302 INO80Q9ULG1 1556 aaPredicted RBP18.86■□□□□ 0.61
HIF3A-201ENST00000244302 KIF3BO15066 747 aa18.86■□□□□ 0.61
HIF3A-201ENST00000244302 CFAP74Q9C0B2 1584 aa18.86■□□□□ 0.61
HIF3A-201ENST00000244302 YEATS2Q9ULM3 1422 aa18.85■□□□□ 0.61
HIF3A-201ENST00000244302 DUOX2Q9NRD8 1548 aa18.85■□□□□ 0.61
HIF3A-201ENST00000244302 KDM5CP41229 1560 aa18.84■□□□□ 0.61
HIF3A-201ENST00000244302 DHX29Q7Z478 1369 aaKnown RBP18.82■□□□□ 0.6
HIF3A-201ENST00000244302 FRMPD1Q5SYB0 1578 aa18.82■□□□□ 0.6
HIF3A-201ENST00000244302 MLH3Q9UHC1 1453 aa18.81■□□□□ 0.6
HIF3A-201ENST00000244302 RICTORQ6R327 1708 aa18.81■□□□□ 0.6
HIF3A-201ENST00000244302 TEX14Q8IWB6 1497 aa18.8■□□□□ 0.6
HIF3A-201ENST00000244302 ERBINQ96RT1 1412 aa18.79■□□□□ 0.6
HIF3A-201ENST00000244302 ANKRD30BQ9BXX2 1392 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms