RNA–Protein interactions for RNA: ENST00000233027.9

NEK4-201, Transcript of NIMA related kinase 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK4, Length 6,057 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK4-201ENST00000233027 PNNQ9H307 717 aaKnown RBP17.07■□□□□ 0.32
NEK4-201ENST00000233027 RCAN3Q9UKA8 241 aa17.07■□□□□ 0.32
NEK4-201ENST00000233027 ABCC8Q09428 1581 aa17.06■□□□□ 0.32
NEK4-201ENST00000233027 KTN1Q86UP2 1357 aaKnown RBP17.06■□□□□ 0.32
NEK4-201ENST00000233027 SLKQ9H2G2 1235 aaPredicted RBP17.06■□□□□ 0.32
NEK4-201ENST00000233027 CECR2Q9BXF3 1484 aa17.06■□□□□ 0.32
NEK4-201ENST00000233027 CARMIL1Q5VZK9 1371 aa17.05■□□□□ 0.32
NEK4-201ENST00000233027 GOLGA6L4A6NEF3 574 aa17.05■□□□□ 0.32
NEK4-201ENST00000233027 TIMELESSQ9UNS1 1208 aa17.05■□□□□ 0.32
NEK4-201ENST00000233027 CUX2O14529 1486 aa17.05■□□□□ 0.32
NEK4-201ENST00000233027 RAB3GAP2Q9H2M9 1393 aa17.04■□□□□ 0.32
NEK4-201ENST00000233027 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.04■□□□□ 0.32
NEK4-201ENST00000233027 PKD2Q13563 968 aa17.04■□□□□ 0.32
NEK4-201ENST00000233027 VPS8Q8N3P4 1428 aa17.04■□□□□ 0.32
NEK4-201ENST00000233027 DRC7Q8IY82 874 aa17.03■□□□□ 0.32
NEK4-201ENST00000233027 ARID3AQ99856 593 aa17.02■□□□□ 0.32
NEK4-201ENST00000233027 MCCP23508 829 aa17.01■□□□□ 0.31
NEK4-201ENST00000233027 CHAF1AQ13111 956 aaPredicted RBP17.01■□□□□ 0.31
NEK4-201ENST00000233027 AMER1Q5JTC6 1135 aaPredicted RBP17■□□□□ 0.31
NEK4-201ENST00000233027 NACADO15069 1562 aa17■□□□□ 0.31
NEK4-201ENST00000233027 BAZ1AQ9NRL2 1556 aaPredicted RBP17■□□□□ 0.31
NEK4-201ENST00000233027 ITPRIPQ8IWB1 547 aa16.99■□□□□ 0.31
NEK4-201ENST00000233027 ROCK2O75116 1388 aaKnown RBP16.99■□□□□ 0.31
NEK4-201ENST00000233027 STK26Q9P289 416 aa16.99■□□□□ 0.31
NEK4-201ENST00000233027 KANK1Q14678 1352 aa16.99■□□□□ 0.31
NEK4-201ENST00000233027 TCERG1O14776 1098 aaKnown RBP16.97■□□□□ 0.31
NEK4-201ENST00000233027 NPHP1O15259 732 aa16.97■□□□□ 0.31
NEK4-201ENST00000233027 MPHOSPH9Q99550 1183 aa16.96■□□□□ 0.31
NEK4-201ENST00000233027 NRDCO43847 1150 aa16.96■□□□□ 0.31
NEK4-201ENST00000233027 MFAP1P55081 439 aaKnown RBP16.95■□□□□ 0.3
NEK4-201ENST00000233027 MLECQ14165 292 aa16.95■□□□□ 0.3
NEK4-201ENST00000233027 IPO9Q96P70 1041 aaKnown RBP16.94■□□□□ 0.3
NEK4-201ENST00000233027 CCDC88BA6NC98 1476 aa16.94■□□□□ 0.3
NEK4-201ENST00000233027 U2AF1L5P0DN76 240 aaPredicted RBP16.93■□□□□ 0.3
NEK4-201ENST00000233027 U2AF1Q01081 240 aaKnown RBP eCLIP16.93■□□□□ 0.3
NEK4-201ENST00000233027 CCDC146Q8IYE0 955 aa16.93■□□□□ 0.3
NEK4-201ENST00000233027 GBP4Q96PP9 640 aa16.93■□□□□ 0.3
NEK4-201ENST00000233027 ERCC6Q03468 1493 aa16.93■□□□□ 0.3
NEK4-201ENST00000233027 GOLGA2Q08379 1002 aa16.93■□□□□ 0.3
NEK4-201ENST00000233027 RALBP1Q15311 655 aa16.93■□□□□ 0.3
NEK4-201ENST00000233027 RWDD1Q9H446 243 aaPredicted RBP16.93■□□□□ 0.3
NEK4-201ENST00000233027 RTF1Q92541 710 aaKnown RBP16.92■□□□□ 0.3
NEK4-201ENST00000233027 FOXD4L1Q9NU39 408 aa16.92■□□□□ 0.3
NEK4-201ENST00000233027 IPO8O15397 1037 aaKnown RBP16.91■□□□□ 0.3
NEK4-201ENST00000233027 GGT6Q6P531 493 aa16.89■□□□□ 0.29
NEK4-201ENST00000233027 CLUAP1Q96AJ1 413 aa16.88■□□□□ 0.29
NEK4-201ENST00000233027 KIAA1211Q6ZU35 1233 aa16.87■□□□□ 0.29
NEK4-201ENST00000233027 HDGFL2Q7Z4V5 671 aaPredicted RBP16.87■□□□□ 0.29
NEK4-201ENST00000233027 GOLGA6L3A6NEY3 463 aa16.87■□□□□ 0.29
NEK4-201ENST00000233027 NUP155O75694 1391 aa16.87■□□□□ 0.29
NEK4-201ENST00000233027 CFAP44Q96MT7 982 aa16.86■□□□□ 0.29
NEK4-201ENST00000233027 PMFBP1Q8TBY8 1022 aa16.86■□□□□ 0.29
NEK4-201ENST00000233027 GNL2Q13823 731 aaKnown RBP16.86■□□□□ 0.29
NEK4-201ENST00000233027 L3MBTL2Q969R5 705 aa16.85■□□□□ 0.29
NEK4-201ENST00000233027 SMC4Q9NTJ3 1288 aa16.85■□□□□ 0.29
NEK4-201ENST00000233027 NOL8Q76FK4 1167 aaKnown RBP16.84■□□□□ 0.29
NEK4-201ENST00000233027 MROH2BQ7Z745 1585 aa16.84■□□□□ 0.29
NEK4-201ENST00000233027 PTMSP20962 102 aa16.84■□□□□ 0.29
NEK4-201ENST00000233027 KIAA2012Q0VF49 1180 aa16.83■□□□□ 0.28
NEK4-201ENST00000233027 SLC4A3P48751 1232 aa16.81■□□□□ 0.28
NEK4-201ENST00000233027 PAK3O75914 559 aaPredicted RBP16.8■□□□□ 0.28
NEK4-201ENST00000233027 TRIM6-TRIM34B2RNG4 842 aa16.8■□□□□ 0.28
NEK4-201ENST00000233027 FMN1Q68DA7 1419 aa16.8■□□□□ 0.28
NEK4-201ENST00000233027 CLSTN1O94985 981 aa16.79■□□□□ 0.28
NEK4-201ENST00000233027 ISY1Q9ULR0 285 aaKnown RBP16.79■□□□□ 0.28
NEK4-201ENST00000233027 PLIN1O60240 522 aa16.79■□□□□ 0.28
NEK4-201ENST00000233027 FOXD4L5Q5VV16 416 aaPredicted RBP16.79■□□□□ 0.28
NEK4-201ENST00000233027 FOXD4L4Q8WXT5 416 aaPredicted RBP16.79■□□□□ 0.28
NEK4-201ENST00000233027 CENPJQ9HC77 1338 aaPredicted RBP16.79■□□□□ 0.28
NEK4-201ENST00000233027 NUTM2DQ5VT03 806 aaPredicted RBP16.79■□□□□ 0.28
NEK4-201ENST00000233027 CALD1Q05682 793 aaKnown RBP16.78■□□□□ 0.28
NEK4-201ENST00000233027 ZNF330Q9Y3S2 320 aaPredicted RBP16.77■□□□□ 0.28
NEK4-201ENST00000233027 ANKRD30AQ9BXX3 1397 aa16.77■□□□□ 0.27
NEK4-201ENST00000233027 RRP7AQ9Y3A4 280 aaKnown RBP16.77■□□□□ 0.27
NEK4-201ENST00000233027 SYAP1Q96A49 352 aaPredicted RBP16.76■□□□□ 0.27
NEK4-201ENST00000233027 SLC4A10Q6U841 1118 aa16.76■□□□□ 0.27
NEK4-201ENST00000233027 HSP90B1P14625 803 aaKnown RBP16.76■□□□□ 0.27
NEK4-201ENST00000233027 HDGFP51858 240 aaKnown RBP16.76■□□□□ 0.27
NEK4-201ENST00000233027 HNRNPMP52272 730 aaKnown RBP eCLIP16.75■□□□□ 0.27
NEK4-201ENST00000233027 NLRP13Q86W25 1043 aa16.75■□□□□ 0.27
NEK4-201ENST00000233027 EIF3AQ14152 1382 aaKnown RBP16.74■□□□□ 0.27
NEK4-201ENST00000233027 FHOD3Q2V2M9 1422 aa16.74■□□□□ 0.27
NEK4-201ENST00000233027 EXOC6Q8TAG9 804 aa16.73■□□□□ 0.27
NEK4-201ENST00000233027 DHX57Q6P158 1386 aaKnown RBP16.73■□□□□ 0.27
NEK4-201ENST00000233027 PDE4AP27815 886 aa16.72■□□□□ 0.27
NEK4-201ENST00000233027 KIF15Q9NS87 1388 aa16.72■□□□□ 0.27
NEK4-201ENST00000233027 BCL2L13Q9BXK5 485 aa16.71■□□□□ 0.27
NEK4-201ENST00000233027 STK31Q9BXU1 1019 aa16.71■□□□□ 0.27
NEK4-201ENST00000233027 WIZO95785 1651 aa16.71■□□□□ 0.27
NEK4-201ENST00000233027 CHMP3Q9Y3E7 222 aa16.71■□□□□ 0.27
NEK4-201ENST00000233027 PDE3BQ13370 1112 aa16.71■□□□□ 0.27
NEK4-201ENST00000233027 TDRD9Q8NDG6 1382 aaKnown RBP16.71■□□□□ 0.26
NEK4-201ENST00000233027 MYBBP1AQ9BQG0 1328 aaKnown RBP16.7■□□□□ 0.26
NEK4-201ENST00000233027 CRBNQ96SW2 442 aa16.7■□□□□ 0.26
NEK4-201ENST00000233027 SPAG9O60271 1321 aaKnown RBP16.69■□□□□ 0.26
NEK4-201ENST00000233027 NCBP3Q53F19 620 aaKnown RBP16.69■□□□□ 0.26
NEK4-201ENST00000233027 HTATSF1O43719 755 aaKnown RBP16.69■□□□□ 0.26
NEK4-201ENST00000233027 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.69■□□□□ 0.26
NEK4-201ENST00000233027 PANK3Q9H999 370 aa16.69■□□□□ 0.26
NEK4-201ENST00000233027 CSB-PGBD3P0DP91 1061 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms