RNA–Protein interactions for RNA: ENST00000230085.12

SNX3-201, Transcript of sorting nexin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-201ENST00000230085 TSPOAP1O95153 1857 aa30.06■■■□□ 2.4
SNX3-201ENST00000230085 CD109Q6YHK3 1445 aa30.06■■■□□ 2.4
SNX3-201ENST00000230085 TTC37Q6PGP7 1564 aa30.06■■■□□ 2.4
SNX3-201ENST00000230085 SUPT6HQ7KZ85 1726 aaKnown RBP29.97■■■□□ 2.39
SNX3-201ENST00000230085 NCOA2Q15596 1464 aa29.96■■■□□ 2.39
SNX3-201ENST00000230085 PPRC1Q5VV67 1664 aaKnown RBP29.96■■■□□ 2.39
SNX3-201ENST00000230085 RRBP1Q9P2E9 1410 aaKnown RBP29.96■■■□□ 2.39
SNX3-201ENST00000230085 DHX57Q6P158 1386 aaKnown RBP29.95■■■□□ 2.38
SNX3-201ENST00000230085 PLCH2O75038 1416 aa29.92■■■□□ 2.38
SNX3-201ENST00000230085 CCNB3Q8WWL7 1395 aa29.91■■■□□ 2.38
SNX3-201ENST00000230085 MYO5CQ9NQX4 1742 aa29.91■■■□□ 2.38
SNX3-201ENST00000230085 GPATCH8Q9UKJ3 1502 aaKnown RBP29.9■■■□□ 2.38
SNX3-201ENST00000230085 CDC42BPAQ5VT25 1732 aa29.89■■■□□ 2.37
SNX3-201ENST00000230085 CDC42BPBQ9Y5S2 1711 aa29.86■■■□□ 2.37
SNX3-201ENST00000230085 TEX14Q8IWB6 1497 aa29.86■■■□□ 2.37
SNX3-201ENST00000230085 PREX2Q70Z35 1606 aa29.84■■■□□ 2.37
SNX3-201ENST00000230085 FANCAO15360 1455 aa29.84■■■□□ 2.37
SNX3-201ENST00000230085 ARHGAP5Q13017 1502 aa29.84■■■□□ 2.37
SNX3-201ENST00000230085 CFDP1Q9UEE9 299 aaPredicted RBP29.82■■■□□ 2.36
SNX3-201ENST00000230085 PHLDB1Q86UU1 1377 aa29.82■■■□□ 2.36
SNX3-201ENST00000230085 EFCAB2Q5VUJ9 269 aa29.82■■■□□ 2.36
SNX3-201ENST00000230085 ARAP3Q8WWN8 1544 aa29.81■■■□□ 2.36
SNX3-201ENST00000230085 ZNF777Q9ULD5 760 aaPredicted RBP29.79■■■□□ 2.36
SNX3-201ENST00000230085 NEO1Q92859 1461 aa29.77■■■□□ 2.36
SNX3-201ENST00000230085 ITSN2Q9NZM3 1697 aa29.77■■■□□ 2.36
SNX3-201ENST00000230085 AKNAQ7Z591 1439 aa29.76■■■□□ 2.36
SNX3-201ENST00000230085 YTHDC1Q96MU7 727 aaKnown RBP29.76■■■□□ 2.35
SNX3-201ENST00000230085 MYOM3Q5VTT5 1437 aa29.76■■■□□ 2.35
SNX3-201ENST00000230085 ZNF644Q9H582 1327 aaPredicted RBP29.73■■■□□ 2.35
SNX3-201ENST00000230085 CFAP74Q9C0B2 1584 aa29.73■■■□□ 2.35
SNX3-201ENST00000230085 COL17A1Q9UMD9 1497 aaPredicted RBP29.71■■■□□ 2.35
SNX3-201ENST00000230085 ADGRL1O94910 1474 aa29.69■■■□□ 2.34
SNX3-201ENST00000230085 SAMD9LQ8IVG5 1584 aa29.69■■■□□ 2.34
SNX3-201ENST00000230085 MIA2Q96PC5 1412 aa29.67■■■□□ 2.34
SNX3-201ENST00000230085 SCAPERQ9BY12 1400 aa29.67■■■□□ 2.34
SNX3-201ENST00000230085 FGD6Q6ZV73 1430 aa29.65■■■□□ 2.34
SNX3-201ENST00000230085 KDM6BO15054 1643 aa29.65■■■□□ 2.34
SNX3-201ENST00000230085 RAPGEF3O95398 923 aa29.64■■■□□ 2.34
SNX3-201ENST00000230085 HNRNPMP52272 730 aaKnown RBP eCLIP29.63■■■□□ 2.33
SNX3-201ENST00000230085 ARHGEF12Q9NZN5 1544 aa29.63■■■□□ 2.33
SNX3-201ENST00000230085 ABCC1P33527 1531 aa29.62■■■□□ 2.33
SNX3-201ENST00000230085 CAMSAP2Q08AD1 1489 aa29.61■■■□□ 2.33
SNX3-201ENST00000230085 DENND4BO75064 1496 aaPredicted RBP29.6■■■□□ 2.33
SNX3-201ENST00000230085 SYCP2Q9BX26 1530 aa29.59■■■□□ 2.33
SNX3-201ENST00000230085 PTPN23Q9H3S7 1636 aa29.58■■■□□ 2.33
SNX3-201ENST00000230085 KIAA1107Q9UPP5 1409 aa29.58■■■□□ 2.33
SNX3-201ENST00000230085 AFAP1Q8N556 730 aa29.57■■■□□ 2.32
SNX3-201ENST00000230085 PLEKHH2Q8IVE3 1493 aa29.57■■■□□ 2.32
SNX3-201ENST00000230085 TRAPPC8Q9Y2L5 1435 aa29.56■■■□□ 2.32
SNX3-201ENST00000230085 POGZQ7Z3K3 1410 aa29.54■■■□□ 2.32
SNX3-201ENST00000230085 FAM50AQ14320 339 aaKnown RBP29.54■■■□□ 2.32
SNX3-201ENST00000230085 MBD5Q9P267 1494 aa29.54■■■□□ 2.32
SNX3-201ENST00000230085 RICTORQ6R327 1708 aa29.54■■■□□ 2.32
SNX3-201ENST00000230085 FRMPD1Q5SYB0 1578 aa29.52■■■□□ 2.32
SNX3-201ENST00000230085 TCOF1Q13428 1488 aaKnown RBP29.52■■■□□ 2.32
SNX3-201ENST00000230085 ZNF518AQ6AHZ1 1483 aa29.5■■■□□ 2.31
SNX3-201ENST00000230085 RSPH4AQ5TD94 716 aa29.44■■■□□ 2.3
SNX3-201ENST00000230085 SUPT16HQ9Y5B9 1047 aaKnown RBP29.44■■■□□ 2.3
SNX3-201ENST00000230085 KDM5CP41229 1560 aa29.43■■■□□ 2.3
SNX3-201ENST00000230085 CCDC141Q6ZP82 1450 aa29.43■■■□□ 2.3
SNX3-201ENST00000230085 ARHGEF5Q12774 1597 aa29.42■■■□□ 2.3
SNX3-201ENST00000230085 MYT1LQ9UL68 1186 aa29.41■■■□□ 2.3
SNX3-201ENST00000230085 SPAG9O60271 1321 aaKnown RBP29.4■■■□□ 2.3
SNX3-201ENST00000230085 ZMYM4Q5VZL5 1548 aa29.39■■■□□ 2.3
SNX3-201ENST00000230085 ABCC5O15440 1437 aa29.38■■■□□ 2.29
SNX3-201ENST00000230085 TSPY4P0CV99 314 aa29.38■■■□□ 2.29
SNX3-201ENST00000230085 TSPY10P0CW01 314 aa29.38■■■□□ 2.29
SNX3-201ENST00000230085 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.37■■■□□ 2.29
SNX3-201ENST00000230085 DAPK1P53355 1430 aa29.37■■■□□ 2.29
SNX3-201ENST00000230085 DNMT1P26358 1616 aaKnown RBP29.36■■■□□ 2.29
SNX3-201ENST00000230085 MLH3Q9UHC1 1453 aa29.36■■■□□ 2.29
SNX3-201ENST00000230085 YEATS2Q9ULM3 1422 aa29.35■■■□□ 2.29
SNX3-201ENST00000230085 ITGAEP38570 1179 aa29.35■■■□□ 2.29
SNX3-201ENST00000230085 HECW2Q9P2P5 1572 aa29.35■■■□□ 2.29
SNX3-201ENST00000230085 MAGI2Q86UL8 1455 aa29.33■■■□□ 2.29
SNX3-201ENST00000230085 KIDINS220Q9ULH0 1771 aa29.33■■■□□ 2.29
SNX3-201ENST00000230085 TIMELESSQ9UNS1 1208 aa29.32■■■□□ 2.28
SNX3-201ENST00000230085 CHIC2Q9UKJ5 165 aa29.31■■■□□ 2.28
SNX3-201ENST00000230085 RAB3GAP2Q9H2M9 1393 aa29.31■■■□□ 2.28
SNX3-201ENST00000230085 ATP7AQ04656 1500 aa29.3■■■□□ 2.28
SNX3-201ENST00000230085 ZFYVE16Q7Z3T8 1539 aa29.3■■■□□ 2.28
SNX3-201ENST00000230085 C9orf84Q5VXU9 1444 aa29.29■■■□□ 2.28
SNX3-201ENST00000230085 CROCC2H7BZ55 1655 aa29.29■■■□□ 2.28
SNX3-201ENST00000230085 INO80Q9ULG1 1556 aaPredicted RBP29.29■■■□□ 2.28
SNX3-201ENST00000230085 PTPRKQ15262 1439 aa29.29■■■□□ 2.28
SNX3-201ENST00000230085 RTEL1-TNFRSF6BF6WH68 1400 aa29.28■■■□□ 2.28
SNX3-201ENST00000230085 SETD5Q9C0A6 1442 aa29.28■■■□□ 2.28
SNX3-201ENST00000230085 SHANK2Q9UPX8 1470 aa29.25■■■□□ 2.27
SNX3-201ENST00000230085 MAST1Q9Y2H9 1570 aa29.25■■■□□ 2.27
SNX3-201ENST00000230085 ARHGEF40Q8TER5 1519 aa29.25■■■□□ 2.27
SNX3-201ENST00000230085 ABCA6Q8N139 1617 aa29.25■■■□□ 2.27
SNX3-201ENST00000230085 DIP2CQ9Y2E4 1556 aa29.23■■■□□ 2.27
SNX3-201ENST00000230085 ATP10AO60312 1499 aa29.21■■■□□ 2.27
SNX3-201ENST00000230085 RRP7BPQ9NSQ0 103 aa29.2■■■□□ 2.26
SNX3-201ENST00000230085 NCOA1Q15788 1441 aa29.17■■■□□ 2.26
SNX3-201ENST00000230085 ANKRD30AQ9BXX3 1397 aa29.16■■■□□ 2.26
SNX3-201ENST00000230085 ADGRL2O95490 1459 aa29.14■■■□□ 2.26
SNX3-201ENST00000230085 PLXNC1O60486 1568 aa29.14■■■□□ 2.26
SNX3-201ENST00000230085 ADGBQ8N7X0 1667 aa29.14■■■□□ 2.25
SNX3-201ENST00000230085 SIGLEC1Q9BZZ2 1709 aa29.13■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms