RNA–Protein interactions for RNA: ENST00000220888.9

TRPS1-201, Transcript of transcriptional repressor GATA binding 1, humanhuman

TSL 1 (best) BASIC

Gene TRPS1, Length 5,480 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRPS1-201ENST00000220888 WRNQ14191 1432 aaPredicted RBP eCLIP13.47□□□□□ -0.25
TRPS1-201ENST00000220888 L1TD1Q5T7N2 865 aaKnown RBP13.45□□□□□ -0.26
TRPS1-201ENST00000220888 CARMIL2Q6F5E8 1435 aa13.44□□□□□ -0.26
TRPS1-201ENST00000220888 EFCAB2Q5VUJ9 269 aa13.44□□□□□ -0.26
TRPS1-201ENST00000220888 KIAA1211Q6ZU35 1233 aa13.44□□□□□ -0.26
TRPS1-201ENST00000220888 CHMP3Q9Y3E7 222 aa13.44□□□□□ -0.26
TRPS1-201ENST00000220888 CALD1Q05682 793 aaKnown RBP13.44□□□□□ -0.26
TRPS1-201ENST00000220888 NGDNQ8NEJ9 315 aaKnown RBP13.43□□□□□ -0.26
TRPS1-201ENST00000220888 MSH5O43196 834 aa13.43□□□□□ -0.26
TRPS1-201ENST00000220888 CHAF1AQ13111 956 aaPredicted RBP13.43□□□□□ -0.26
TRPS1-201ENST00000220888 CFAP44Q96MT7 982 aa13.43□□□□□ -0.26
TRPS1-201ENST00000220888 KIAA2012Q0VF49 1180 aa13.42□□□□□ -0.26
TRPS1-201ENST00000220888 FRAT2O75474 233 aaPredicted RBP13.41□□□□□ -0.26
TRPS1-201ENST00000220888 SPAG9O60271 1321 aaKnown RBP13.41□□□□□ -0.26
TRPS1-201ENST00000220888 DCAF8L1A6NGE4 600 aa13.41□□□□□ -0.26
TRPS1-201ENST00000220888 HDAC5Q9UQL6 1122 aa13.41□□□□□ -0.26
TRPS1-201ENST00000220888 IPO8O15397 1037 aaKnown RBP13.4□□□□□ -0.26
TRPS1-201ENST00000220888 MEX3CQ5U5Q3 659 aaKnown RBP13.4□□□□□ -0.26
TRPS1-201ENST00000220888 STK31Q9BXU1 1019 aa13.4□□□□□ -0.26
TRPS1-201ENST00000220888 APBB1O00213 710 aa13.4□□□□□ -0.26
TRPS1-201ENST00000220888 MIER1Q8N108 512 aa13.39□□□□□ -0.27
TRPS1-201ENST00000220888 CEP162Q5TB80 1403 aa13.37□□□□□ -0.27
TRPS1-201ENST00000220888 FHAD1B1AJZ9 1412 aa13.37□□□□□ -0.27
TRPS1-201ENST00000220888 HSCBQ8IWL3 235 aa13.37□□□□□ -0.27
TRPS1-201ENST00000220888 KRI1Q8N9T8 703 aaKnown RBP13.37□□□□□ -0.27
TRPS1-201ENST00000220888 U2AF1L5P0DN76 240 aaPredicted RBP13.37□□□□□ -0.27
TRPS1-201ENST00000220888 U2AF1Q01081 240 aaKnown RBP eCLIP13.37□□□□□ -0.27
TRPS1-201ENST00000220888 EVA1CP58658 441 aa13.36□□□□□ -0.27
TRPS1-201ENST00000220888 PHF23Q9BUL5 403 aaPredicted RBP13.36□□□□□ -0.27
TRPS1-201ENST00000220888 AMPHP49418 695 aa13.36□□□□□ -0.27
TRPS1-201ENST00000220888 KIF3BO15066 747 aa13.35□□□□□ -0.27
TRPS1-201ENST00000220888 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.35□□□□□ -0.27
TRPS1-201ENST00000220888 GPATCH3Q96I76 525 aa13.34□□□□□ -0.27
TRPS1-201ENST00000220888 TERF2IPQ9NYB0 399 aa13.34□□□□□ -0.27
TRPS1-201ENST00000220888 CEP164Q9UPV0 1460 aa13.34□□□□□ -0.27
TRPS1-201ENST00000220888 DCAF1Q9Y4B6 1507 aa13.34□□□□□ -0.27
TRPS1-201ENST00000220888 CARMIL1Q5VZK9 1371 aa13.34□□□□□ -0.27
TRPS1-201ENST00000220888 SIN3AQ96ST3 1273 aa13.34□□□□□ -0.27
TRPS1-201ENST00000220888 SUPT16HQ9Y5B9 1047 aaKnown RBP13.34□□□□□ -0.27
TRPS1-201ENST00000220888 DRC7Q8IY82 874 aa13.33□□□□□ -0.27
TRPS1-201ENST00000220888 WASHC2CQ9Y4E1 1318 aa13.33□□□□□ -0.27
TRPS1-201ENST00000220888 VPS53Q5VIR6 699 aa13.33□□□□□ -0.28
TRPS1-201ENST00000220888 LTV1Q96GA3 475 aaPredicted RBP13.33□□□□□ -0.28
TRPS1-201ENST00000220888 CCDC34Q96HJ3 373 aa13.33□□□□□ -0.28
TRPS1-201ENST00000220888 PKD2Q13563 968 aa13.33□□□□□ -0.28
TRPS1-201ENST00000220888 RASSF8Q8NHQ8 419 aa13.32□□□□□ -0.28
TRPS1-201ENST00000220888 HTATSF1O43719 755 aaKnown RBP13.32□□□□□ -0.28
TRPS1-201ENST00000220888 MARCH6O60337 910 aa13.31□□□□□ -0.28
TRPS1-201ENST00000220888 TOMM22Q9NS69 142 aa13.31□□□□□ -0.28
TRPS1-201ENST00000220888 CUX2O14529 1486 aa13.31□□□□□ -0.28
TRPS1-201ENST00000220888 PDS5BQ9NTI5 1447 aa13.3□□□□□ -0.28
TRPS1-201ENST00000220888 NOC3LQ8WTT2 800 aaKnown RBP13.3□□□□□ -0.28
TRPS1-201ENST00000220888 NUTM2FA1L443 756 aa13.3□□□□□ -0.28
TRPS1-201ENST00000220888 KLHL34Q8N239 644 aa13.3□□□□□ -0.28
TRPS1-201ENST00000220888 EIF3AQ14152 1382 aaKnown RBP13.28□□□□□ -0.28
TRPS1-201ENST00000220888 CTDP1Q9Y5B0 961 aaPredicted RBP13.28□□□□□ -0.28
TRPS1-201ENST00000220888 KTN1Q86UP2 1357 aaKnown RBP13.27□□□□□ -0.28
TRPS1-201ENST00000220888 NUTM2DQ5VT03 806 aaPredicted RBP13.27□□□□□ -0.28
TRPS1-201ENST00000220888 ITPRIPQ8IWB1 547 aa13.27□□□□□ -0.28
TRPS1-201ENST00000220888 HMMRO75330 724 aa13.27□□□□□ -0.29
TRPS1-201ENST00000220888 HSP90B1P14625 803 aaKnown RBP13.27□□□□□ -0.29
TRPS1-201ENST00000220888 TRIM34Q9BYJ4 488 aa13.27□□□□□ -0.29
TRPS1-201ENST00000220888 ERICH6BQ5W0A0 696 aa13.26□□□□□ -0.29
TRPS1-201ENST00000220888 NACADO15069 1562 aa13.26□□□□□ -0.29
TRPS1-201ENST00000220888 PPP4R2Q9NY27 417 aa13.26□□□□□ -0.29
TRPS1-201ENST00000220888 CEP89Q96ST8 783 aa13.26□□□□□ -0.29
TRPS1-201ENST00000220888 LMOD3Q0VAK6 560 aa13.26□□□□□ -0.29
TRPS1-201ENST00000220888 PDE4CQ08493 712 aa13.25□□□□□ -0.29
TRPS1-201ENST00000220888 CWC22Q9HCG8 908 aaKnown RBP13.25□□□□□ -0.29
TRPS1-201ENST00000220888 CYB5RLQ6IPT4 315 aa13.25□□□□□ -0.29
TRPS1-201ENST00000220888 SLC4A10Q6U841 1118 aa13.25□□□□□ -0.29
TRPS1-201ENST00000220888 TNIKQ9UKE5 1360 aa13.25□□□□□ -0.29
TRPS1-201ENST00000220888 NUP155O75694 1391 aa13.25□□□□□ -0.29
TRPS1-201ENST00000220888 C1orf141Q5JVX7 400 aa13.24□□□□□ -0.29
TRPS1-201ENST00000220888 NOL10Q9BSC4 688 aaKnown RBP13.24□□□□□ -0.29
TRPS1-201ENST00000220888 ROCK2O75116 1388 aaKnown RBP13.24□□□□□ -0.29
TRPS1-201ENST00000220888 AMER1Q5JTC6 1135 aaPredicted RBP13.23□□□□□ -0.29
TRPS1-201ENST00000220888 TCEAL9Q9UHQ7 104 aa13.23□□□□□ -0.29
TRPS1-201ENST00000220888 ANKRD30AQ9BXX3 1397 aa13.23□□□□□ -0.29
TRPS1-201ENST00000220888 TRIM6-TRIM34B2RNG4 842 aa13.23□□□□□ -0.29
TRPS1-201ENST00000220888 TPM4P67936 248 aa13.23□□□□□ -0.29
TRPS1-201ENST00000220888 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.23□□□□□ -0.29
TRPS1-201ENST00000220888 CNKSR2Q8WXI2 1034 aa13.22□□□□□ -0.29
TRPS1-201ENST00000220888 RWDD1Q9H446 243 aaPredicted RBP13.22□□□□□ -0.29
TRPS1-201ENST00000220888 AMOTL1Q8IY63 956 aa13.21□□□□□ -0.29
TRPS1-201ENST00000220888 B4GALNT3Q6L9W6 998 aa13.21□□□□□ -0.29
TRPS1-201ENST00000220888 NAP1L5Q96NT1 182 aaPredicted RBP13.2□□□□□ -0.3
TRPS1-201ENST00000220888 SPRYD3Q8NCJ5 442 aa13.2□□□□□ -0.3
TRPS1-201ENST00000220888 SYTL4Q96C24 671 aaPredicted RBP13.2□□□□□ -0.3
TRPS1-201ENST00000220888 TTC5Q8N0Z6 440 aa13.2□□□□□ -0.3
TRPS1-201ENST00000220888 RAD21O60216 631 aa13.2□□□□□ -0.3
TRPS1-201ENST00000220888 CCDC180Q9P1Z9 1646 aa13.19□□□□□ -0.3
TRPS1-201ENST00000220888 SMC4Q9NTJ3 1288 aa13.19□□□□□ -0.3
TRPS1-201ENST00000220888 RSPH4AQ5TD94 716 aa13.19□□□□□ -0.3
TRPS1-201ENST00000220888 CREBRFQ8IUR6 639 aa13.18□□□□□ -0.3
TRPS1-201ENST00000220888 TDRD9Q8NDG6 1382 aaKnown RBP13.18□□□□□ -0.3
TRPS1-201ENST00000220888 HNRNPMP52272 730 aaKnown RBP eCLIP13.18□□□□□ -0.3
TRPS1-201ENST00000220888 FBXW7Q969H0 707 aa13.17□□□□□ -0.3
TRPS1-201ENST00000220888 ARHGAP35Q9NRY4 1499 aa13.17□□□□□ -0.3
TRPS1-201ENST00000220888 TEFQ10587 303 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms