RNA–Protein interactions for RNA: ENST00000220562.8

EXTL3-201, Transcript of exostosin like glycosyltransferase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene EXTL3, Length 6,483 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXTL3-201ENST00000220562 CCER2I3L3R5 266 aa22.78■■□□□ 1.24
EXTL3-201ENST00000220562 SOGA1O94964 1423 aa22.76■■□□□ 1.23
EXTL3-201ENST00000220562 KTN1Q86UP2 1357 aaKnown RBP22.76■■□□□ 1.23
EXTL3-201ENST00000220562 BAZ1AQ9NRL2 1556 aaPredicted RBP22.76■■□□□ 1.23
EXTL3-201ENST00000220562 FOXD1Q16676 465 aa22.75■■□□□ 1.23
EXTL3-201ENST00000220562 RTF1Q92541 710 aaKnown RBP22.75■■□□□ 1.23
EXTL3-201ENST00000220562 HDGFP51858 240 aaKnown RBP22.74■■□□□ 1.23
EXTL3-201ENST00000220562 STK26Q9P289 416 aa22.74■■□□□ 1.23
EXTL3-201ENST00000220562 NRDCO43847 1150 aa22.74■■□□□ 1.23
EXTL3-201ENST00000220562 APBB1O00213 710 aa22.72■■□□□ 1.23
EXTL3-201ENST00000220562 TIMELESSQ9UNS1 1208 aa22.72■■□□□ 1.23
EXTL3-201ENST00000220562 PKD2Q13563 968 aa22.71■■□□□ 1.23
EXTL3-201ENST00000220562 L1TD1Q5T7N2 865 aaKnown RBP22.71■■□□□ 1.23
EXTL3-201ENST00000220562 DRC7Q8IY82 874 aa22.7■■□□□ 1.22
EXTL3-201ENST00000220562 MSNP26038 577 aaKnown RBP22.7■■□□□ 1.22
EXTL3-201ENST00000220562 CHAF1AQ13111 956 aaPredicted RBP22.69■■□□□ 1.22
EXTL3-201ENST00000220562 HDGFL2Q7Z4V5 671 aaPredicted RBP22.69■■□□□ 1.22
EXTL3-201ENST00000220562 ROCK2O75116 1388 aaKnown RBP22.68■■□□□ 1.22
EXTL3-201ENST00000220562 GGT6Q6P531 493 aa22.67■■□□□ 1.22
EXTL3-201ENST00000220562 DEKP35659 375 aaKnown RBP22.67■■□□□ 1.22
EXTL3-201ENST00000220562 RBM19Q9Y4C8 960 aaKnown RBP22.66■■□□□ 1.22
EXTL3-201ENST00000220562 CFAP44Q96MT7 982 aa22.66■■□□□ 1.22
EXTL3-201ENST00000220562 IPO8O15397 1037 aaKnown RBP22.64■■□□□ 1.22
EXTL3-201ENST00000220562 ITPRIPQ8IWB1 547 aa22.64■■□□□ 1.21
EXTL3-201ENST00000220562 GNL2Q13823 731 aaKnown RBP22.63■■□□□ 1.21
EXTL3-201ENST00000220562 CLSTN1O94985 981 aa22.62■■□□□ 1.21
EXTL3-201ENST00000220562 RCAN3Q9UKA8 241 aa22.62■■□□□ 1.21
EXTL3-201ENST00000220562 KANK4Q5T7N3 995 aaPredicted RBP22.62■■□□□ 1.21
EXTL3-201ENST00000220562 CECR2Q9BXF3 1484 aa22.61■■□□□ 1.21
EXTL3-201ENST00000220562 TRHP20396 242 aaPredicted RBP22.61■■□□□ 1.21
EXTL3-201ENST00000220562 ISY1Q9ULR0 285 aaKnown RBP22.61■■□□□ 1.21
EXTL3-201ENST00000220562 VPS8Q8N3P4 1428 aa22.61■■□□□ 1.21
EXTL3-201ENST00000220562 U2AF1L5P0DN76 240 aaPredicted RBP22.6■■□□□ 1.21
EXTL3-201ENST00000220562 U2AF1Q01081 240 aaKnown RBP eCLIP22.6■■□□□ 1.21
EXTL3-201ENST00000220562 KIAA1211Q6ZU35 1233 aa22.6■■□□□ 1.21
EXTL3-201ENST00000220562 PAK3O75914 559 aaPredicted RBP22.6■■□□□ 1.21
EXTL3-201ENST00000220562 ABCC8Q09428 1581 aa22.58■■□□□ 1.2
EXTL3-201ENST00000220562 RALBP1Q15311 655 aa22.58■■□□□ 1.2
EXTL3-201ENST00000220562 RWDD1Q9H446 243 aaPredicted RBP22.57■■□□□ 1.2
EXTL3-201ENST00000220562 MPHOSPH9Q99550 1183 aa22.57■■□□□ 1.2
EXTL3-201ENST00000220562 RAB3GAP2Q9H2M9 1393 aa22.56■■□□□ 1.2
EXTL3-201ENST00000220562 CALD1Q05682 793 aaKnown RBP22.56■■□□□ 1.2
EXTL3-201ENST00000220562 GBP4Q96PP9 640 aa22.54■■□□□ 1.2
EXTL3-201ENST00000220562 GZF1Q9H116 711 aaPredicted RBP22.53■■□□□ 1.2
EXTL3-201ENST00000220562 NUP155O75694 1391 aa22.53■■□□□ 1.2
EXTL3-201ENST00000220562 ZNF330Q9Y3S2 320 aaPredicted RBP22.52■■□□□ 1.2
EXTL3-201ENST00000220562 SLKQ9H2G2 1235 aaPredicted RBP22.51■■□□□ 1.19
EXTL3-201ENST00000220562 PTMSP20962 102 aa22.51■■□□□ 1.19
EXTL3-201ENST00000220562 CSB-PGBD3P0DP91 1061 aa22.51■■□□□ 1.19
EXTL3-201ENST00000220562 CARMIL2Q6F5E8 1435 aa22.5■■□□□ 1.19
EXTL3-201ENST00000220562 EIF3AQ14152 1382 aaKnown RBP22.5■■□□□ 1.19
EXTL3-201ENST00000220562 MFAP1P55081 439 aaKnown RBP22.49■■□□□ 1.19
EXTL3-201ENST00000220562 PMFBP1Q8TBY8 1022 aa22.49■■□□□ 1.19
EXTL3-201ENST00000220562 TCERG1O14776 1098 aaKnown RBP22.48■■□□□ 1.19
EXTL3-201ENST00000220562 ANKRD30AQ9BXX3 1397 aa22.47■■□□□ 1.19
EXTL3-201ENST00000220562 CCDC88BA6NC98 1476 aa22.47■■□□□ 1.19
EXTL3-201ENST00000220562 CCDC146Q8IYE0 955 aa22.47■■□□□ 1.19
EXTL3-201ENST00000220562 SMC4Q9NTJ3 1288 aa22.46■■□□□ 1.19
EXTL3-201ENST00000220562 NCBP3Q53F19 620 aaKnown RBP22.45■■□□□ 1.18
EXTL3-201ENST00000220562 SPAG9O60271 1321 aaKnown RBP22.43■■□□□ 1.18
EXTL3-201ENST00000220562 STK31Q9BXU1 1019 aa22.43■■□□□ 1.18
EXTL3-201ENST00000220562 TRIM6-TRIM34B2RNG4 842 aa22.42■■□□□ 1.18
EXTL3-201ENST00000220562 FMN1Q68DA7 1419 aa22.42■■□□□ 1.18
EXTL3-201ENST00000220562 CHMP3Q9Y3E7 222 aa22.42■■□□□ 1.18
EXTL3-201ENST00000220562 HSP90B1P14625 803 aaKnown RBP22.41■■□□□ 1.18
EXTL3-201ENST00000220562 KIAA2012Q0VF49 1180 aa22.4■■□□□ 1.18
EXTL3-201ENST00000220562 NUTM2DQ5VT03 806 aaPredicted RBP22.4■■□□□ 1.18
EXTL3-201ENST00000220562 HTATSF1O43719 755 aaKnown RBP22.4■■□□□ 1.18
EXTL3-201ENST00000220562 GPATCH3Q96I76 525 aa22.4■■□□□ 1.18
EXTL3-201ENST00000220562 GORABQ5T7V8 394 aa22.39■■□□□ 1.17
EXTL3-201ENST00000220562 SYAP1Q96A49 352 aaPredicted RBP22.38■■□□□ 1.17
EXTL3-201ENST00000220562 EFCAB2Q5VUJ9 269 aa22.38■■□□□ 1.17
EXTL3-201ENST00000220562 HNRNPMP52272 730 aaKnown RBP eCLIP22.38■■□□□ 1.17
EXTL3-201ENST00000220562 SLC4A10Q6U841 1118 aa22.37■■□□□ 1.17
EXTL3-201ENST00000220562 FOXD4L1Q9NU39 408 aa22.37■■□□□ 1.17
EXTL3-201ENST00000220562 CLUAP1Q96AJ1 413 aa22.37■■□□□ 1.17
EXTL3-201ENST00000220562 ARID3AQ99856 593 aa22.36■■□□□ 1.17
EXTL3-201ENST00000220562 TERF2IPQ9NYB0 399 aa22.36■■□□□ 1.17
EXTL3-201ENST00000220562 NOL8Q76FK4 1167 aaKnown RBP22.35■■□□□ 1.17
EXTL3-201ENST00000220562 KIF3BO15066 747 aa22.35■■□□□ 1.17
EXTL3-201ENST00000220562 AMER1Q5JTC6 1135 aaPredicted RBP22.35■■□□□ 1.17
EXTL3-201ENST00000220562 CENPJQ9HC77 1338 aaPredicted RBP22.35■■□□□ 1.17
EXTL3-201ENST00000220562 MROH2BQ7Z745 1585 aa22.34■■□□□ 1.17
EXTL3-201ENST00000220562 TAF7LQ5H9L4 462 aa22.34■■□□□ 1.17
EXTL3-201ENST00000220562 L3MBTL2Q969R5 705 aa22.34■■□□□ 1.17
EXTL3-201ENST00000220562 HMMRO75330 724 aa22.34■■□□□ 1.17
EXTL3-201ENST00000220562 TPM4P67936 248 aa22.34■■□□□ 1.17
EXTL3-201ENST00000220562 GOLGA6L3A6NEY3 463 aa22.33■■□□□ 1.17
EXTL3-201ENST00000220562 TDRD9Q8NDG6 1382 aaKnown RBP22.33■■□□□ 1.17
EXTL3-201ENST00000220562 IPO9Q96P70 1041 aaKnown RBP22.32■■□□□ 1.16
EXTL3-201ENST00000220562 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.3■■□□□ 1.16
EXTL3-201ENST00000220562 TSHZ2Q9NRE2 1034 aa22.29■■□□□ 1.16
EXTL3-201ENST00000220562 CHMP4AQ9BY43 222 aa22.29■■□□□ 1.16
EXTL3-201ENST00000220562 NOC3LQ8WTT2 800 aaKnown RBP22.29■■□□□ 1.16
EXTL3-201ENST00000220562 PDS5BQ9NTI5 1447 aa22.28■■□□□ 1.16
EXTL3-201ENST00000220562 SMARCA2P51531 1590 aa22.28■■□□□ 1.16
EXTL3-201ENST00000220562 CCDC9Q9Y3X0 531 aaKnown RBP22.28■■□□□ 1.16
EXTL3-201ENST00000220562 FHOD3Q2V2M9 1422 aa22.27■■□□□ 1.16
EXTL3-201ENST00000220562 NLRP13Q86W25 1043 aa22.27■■□□□ 1.16
EXTL3-201ENST00000220562 NGDNQ8NEJ9 315 aaKnown RBP22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms