RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 ARHGAP35Q9NRY4 1499 aa17.28■□□□□ 0.36
SF3A1-201ENST00000215793 NAP1L2Q9ULW6 460 aaPredicted RBP17.27■□□□□ 0.35
SF3A1-201ENST00000215793 SOGA1O94964 1423 aa17.26■□□□□ 0.35
SF3A1-201ENST00000215793 RTF1Q92541 710 aaKnown RBP17.26■□□□□ 0.35
SF3A1-201ENST00000215793 EIF4G1Q04637 1599 aaKnown RBP17.26■□□□□ 0.35
SF3A1-201ENST00000215793 L1TD1Q5T7N2 865 aaKnown RBP17.25■□□□□ 0.35
SF3A1-201ENST00000215793 HDGFL2Q7Z4V5 671 aaPredicted RBP17.25■□□□□ 0.35
SF3A1-201ENST00000215793 CALD1Q05682 793 aaKnown RBP17.25■□□□□ 0.35
SF3A1-201ENST00000215793 RALBP1Q15311 655 aa17.24■□□□□ 0.35
SF3A1-201ENST00000215793 TAOK2Q9UL54 1235 aa17.22■□□□□ 0.35
SF3A1-201ENST00000215793 CHAF1AQ13111 956 aaPredicted RBP17.22■□□□□ 0.35
SF3A1-201ENST00000215793 SOX12O15370 315 aa17.21■□□□□ 0.35
SF3A1-201ENST00000215793 SAFB2Q14151 953 aaKnown RBP eCLIP17.21■□□□□ 0.35
SF3A1-201ENST00000215793 GGT6Q6P531 493 aa17.21■□□□□ 0.35
SF3A1-201ENST00000215793 CARMIL2Q6F5E8 1435 aa17.21■□□□□ 0.35
SF3A1-201ENST00000215793 TULP1O00294 542 aaPredicted RBP17.21■□□□□ 0.35
SF3A1-201ENST00000215793 CHMP4AQ9BY43 222 aa17.2■□□□□ 0.34
SF3A1-201ENST00000215793 CECR2Q9BXF3 1484 aa17.2■□□□□ 0.34
SF3A1-201ENST00000215793 MLECQ14165 292 aa17.2■□□□□ 0.34
SF3A1-201ENST00000215793 RCAN3Q9UKA8 241 aa17.2■□□□□ 0.34
SF3A1-201ENST00000215793 RWDD1Q9H446 243 aaPredicted RBP17.19■□□□□ 0.34
SF3A1-201ENST00000215793 U2AF1L5P0DN76 240 aaPredicted RBP17.18■□□□□ 0.34
SF3A1-201ENST00000215793 U2AF1Q01081 240 aaKnown RBP eCLIP17.18■□□□□ 0.34
SF3A1-201ENST00000215793 MPHOSPH9Q99550 1183 aa17.18■□□□□ 0.34
SF3A1-201ENST00000215793 MSNP26038 577 aaKnown RBP17.17■□□□□ 0.34
SF3A1-201ENST00000215793 RTN4Q9NQC3 1192 aaKnown RBP17.17■□□□□ 0.34
SF3A1-201ENST00000215793 RBM19Q9Y4C8 960 aaKnown RBP17.17■□□□□ 0.34
SF3A1-201ENST00000215793 FMN1Q68DA7 1419 aa17.17■□□□□ 0.34
SF3A1-201ENST00000215793 KIAA1211Q6ZU35 1233 aa17.17■□□□□ 0.34
SF3A1-201ENST00000215793 EFCAB2Q5VUJ9 269 aa17.17■□□□□ 0.34
SF3A1-201ENST00000215793 ROCK2O75116 1388 aaKnown RBP17.17■□□□□ 0.34
SF3A1-201ENST00000215793 KANK4Q5T7N3 995 aaPredicted RBP17.16■□□□□ 0.34
SF3A1-201ENST00000215793 TCERG1O14776 1098 aaKnown RBP17.16■□□□□ 0.34
SF3A1-201ENST00000215793 PTMSP20962 102 aa17.16■□□□□ 0.34
SF3A1-201ENST00000215793 STK26Q9P289 416 aa17.16■□□□□ 0.34
SF3A1-201ENST00000215793 NUP155O75694 1391 aa17.16■□□□□ 0.34
SF3A1-201ENST00000215793 ANKRD30AQ9BXX3 1397 aa17.16■□□□□ 0.34
SF3A1-201ENST00000215793 GBP4Q96PP9 640 aa17.15■□□□□ 0.34
SF3A1-201ENST00000215793 RAB3GAP2Q9H2M9 1393 aa17.14■□□□□ 0.33
SF3A1-201ENST00000215793 FOXD1Q16676 465 aa17.13■□□□□ 0.33
SF3A1-201ENST00000215793 EIF3AQ14152 1382 aaKnown RBP17.12■□□□□ 0.33
SF3A1-201ENST00000215793 ITPRIPQ8IWB1 547 aa17.11■□□□□ 0.33
SF3A1-201ENST00000215793 SPRYD3Q8NCJ5 442 aa17.11■□□□□ 0.33
SF3A1-201ENST00000215793 PMFBP1Q8TBY8 1022 aa17.1■□□□□ 0.33
SF3A1-201ENST00000215793 HDAC5Q9UQL6 1122 aa17.1■□□□□ 0.33
SF3A1-201ENST00000215793 APBB1O00213 710 aa17.1■□□□□ 0.33
SF3A1-201ENST00000215793 DRC7Q8IY82 874 aa17.1■□□□□ 0.33
SF3A1-201ENST00000215793 DEKP35659 375 aaKnown RBP17.09■□□□□ 0.33
SF3A1-201ENST00000215793 GNL2Q13823 731 aaKnown RBP17.09■□□□□ 0.33
SF3A1-201ENST00000215793 HTATSF1O43719 755 aaKnown RBP17.08■□□□□ 0.32
SF3A1-201ENST00000215793 PDE3BQ13370 1112 aa17.08■□□□□ 0.32
SF3A1-201ENST00000215793 RSPH4AQ5TD94 716 aa17.08■□□□□ 0.32
SF3A1-201ENST00000215793 STK31Q9BXU1 1019 aa17.08■□□□□ 0.32
SF3A1-201ENST00000215793 NLRP13Q86W25 1043 aa17.07■□□□□ 0.32
SF3A1-201ENST00000215793 TERF2IPQ9NYB0 399 aa17.07■□□□□ 0.32
SF3A1-201ENST00000215793 TRHP20396 242 aaPredicted RBP17.07■□□□□ 0.32
SF3A1-201ENST00000215793 PDS5BQ9NTI5 1447 aa17.07■□□□□ 0.32
SF3A1-201ENST00000215793 SPAG9O60271 1321 aaKnown RBP17.07■□□□□ 0.32
SF3A1-201ENST00000215793 CCDC88BA6NC98 1476 aa17.05■□□□□ 0.32
SF3A1-201ENST00000215793 HMMRO75330 724 aa17.05■□□□□ 0.32
SF3A1-201ENST00000215793 PAK3O75914 559 aaPredicted RBP17.05■□□□□ 0.32
SF3A1-201ENST00000215793 SYAP1Q96A49 352 aaPredicted RBP17.04■□□□□ 0.32
SF3A1-201ENST00000215793 L3MBTL2Q969R5 705 aa17.04■□□□□ 0.32
SF3A1-201ENST00000215793 SMC4Q9NTJ3 1288 aa17.03■□□□□ 0.32
SF3A1-201ENST00000215793 KIAA2012Q0VF49 1180 aa17.03■□□□□ 0.32
SF3A1-201ENST00000215793 CSB-PGBD3P0DP91 1061 aa17.03■□□□□ 0.32
SF3A1-201ENST00000215793 KIF3BO15066 747 aa17.02■□□□□ 0.32
SF3A1-201ENST00000215793 TDRD9Q8NDG6 1382 aaKnown RBP17.02■□□□□ 0.31
SF3A1-201ENST00000215793 SLKQ9H2G2 1235 aaPredicted RBP17.02■□□□□ 0.31
SF3A1-201ENST00000215793 LMOD3Q0VAK6 560 aa17.01■□□□□ 0.31
SF3A1-201ENST00000215793 ISY1Q9ULR0 285 aaKnown RBP17.01■□□□□ 0.31
SF3A1-201ENST00000215793 PHLDB1Q86UU1 1377 aa17.01■□□□□ 0.31
SF3A1-201ENST00000215793 GPATCH3Q96I76 525 aa17■□□□□ 0.31
SF3A1-201ENST00000215793 SMARCA2P51531 1590 aa16.99■□□□□ 0.31
SF3A1-201ENST00000215793 CENPJQ9HC77 1338 aaPredicted RBP16.98■□□□□ 0.31
SF3A1-201ENST00000215793 CCDC34Q96HJ3 373 aa16.98■□□□□ 0.31
SF3A1-201ENST00000215793 ABCC8Q09428 1581 aa16.97■□□□□ 0.31
SF3A1-201ENST00000215793 GORABQ5T7V8 394 aa16.97■□□□□ 0.31
SF3A1-201ENST00000215793 MROH2BQ7Z745 1585 aa16.97■□□□□ 0.31
SF3A1-201ENST00000215793 MFAP1P55081 439 aaKnown RBP16.96■□□□□ 0.31
SF3A1-201ENST00000215793 ZNF330Q9Y3S2 320 aaPredicted RBP16.96■□□□□ 0.31
SF3A1-201ENST00000215793 IPO9Q96P70 1041 aaKnown RBP16.95■□□□□ 0.3
SF3A1-201ENST00000215793 CLSTN1O94985 981 aa16.95■□□□□ 0.3
SF3A1-201ENST00000215793 GZF1Q9H116 711 aaPredicted RBP16.95■□□□□ 0.3
SF3A1-201ENST00000215793 CCDC18Q5T9S5 1454 aa16.95■□□□□ 0.3
SF3A1-201ENST00000215793 TRIM6-TRIM34B2RNG4 842 aa16.94■□□□□ 0.3
SF3A1-201ENST00000215793 HNRNPMP52272 730 aaKnown RBP eCLIP16.94■□□□□ 0.3
SF3A1-201ENST00000215793 CSPP1Q1MSJ5 1256 aa16.94■□□□□ 0.3
SF3A1-201ENST00000215793 CLUAP1Q96AJ1 413 aa16.94■□□□□ 0.3
SF3A1-201ENST00000215793 EID1Q9Y6B2 187 aa16.94■□□□□ 0.3
SF3A1-201ENST00000215793 TPM4P67936 248 aa16.93■□□□□ 0.3
SF3A1-201ENST00000215793 WASHC2CQ9Y4E1 1318 aa16.93■□□□□ 0.3
SF3A1-201ENST00000215793 KIF15Q9NS87 1388 aa16.92■□□□□ 0.3
SF3A1-201ENST00000215793 RAPGEF2Q9Y4G8 1499 aa16.92■□□□□ 0.3
SF3A1-201ENST00000215793 GOLGA6L3A6NEY3 463 aa16.92■□□□□ 0.3
SF3A1-201ENST00000215793 TAF7LQ5H9L4 462 aa16.91■□□□□ 0.3
SF3A1-201ENST00000215793 NGDNQ8NEJ9 315 aaKnown RBP16.91■□□□□ 0.3
SF3A1-201ENST00000215793 SLC4A10Q6U841 1118 aa16.9■□□□□ 0.3
SF3A1-201ENST00000215793 CCDC146Q8IYE0 955 aa16.9■□□□□ 0.3
SF3A1-201ENST00000215793 MYBBP1AQ9BQG0 1328 aaKnown RBP16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 222.8 ms