RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 KIF7Q2M1P5 1343 aa19.27■□□□□ 0.67
USH1C-201ENST00000005226 NCOA1Q15788 1441 aa19.26■□□□□ 0.67
USH1C-201ENST00000005226 LAMC3Q9Y6N6 1575 aa19.26■□□□□ 0.67
USH1C-201ENST00000005226 SLC4A1APQ9BWU0 796 aaKnown RBP19.26■□□□□ 0.67
USH1C-201ENST00000005226 EPRSP07814 1512 aaKnown RBP19.26■□□□□ 0.67
USH1C-201ENST00000005226 ERICH6Q7L0X2 663 aa19.25■□□□□ 0.67
USH1C-201ENST00000005226 THOC2Q8NI27 1593 aaKnown RBP19.25■□□□□ 0.67
USH1C-201ENST00000005226 HECW1Q76N89 1606 aa19.24■□□□□ 0.67
USH1C-201ENST00000005226 ZNF326Q5BKZ1 582 aaKnown RBP19.24■□□□□ 0.67
USH1C-201ENST00000005226 ANKRD30BQ9BXX2 1392 aa19.23■□□□□ 0.67
USH1C-201ENST00000005226 GCC2Q8IWJ2 1684 aa19.23■□□□□ 0.67
USH1C-201ENST00000005226 ZBED9Q6R2W3 1325 aa19.21■□□□□ 0.67
USH1C-201ENST00000005226 ERICH6BQ5W0A0 696 aa19.17■□□□□ 0.66
USH1C-201ENST00000005226 MIA2Q96PC5 1412 aa19.17■□□□□ 0.66
USH1C-201ENST00000005226 RPRD2Q5VT52 1461 aaKnown RBP19.17■□□□□ 0.66
USH1C-201ENST00000005226 AKNAQ7Z591 1439 aa19.17■□□□□ 0.66
USH1C-201ENST00000005226 DAPK1P53355 1430 aa19.16■□□□□ 0.66
USH1C-201ENST00000005226 ABCC5O15440 1437 aa19.16■□□□□ 0.66
USH1C-201ENST00000005226 PDS5BQ9NTI5 1447 aa19.16■□□□□ 0.66
USH1C-201ENST00000005226 SPATA31E1Q6ZUB1 1445 aa19.14■□□□□ 0.66
USH1C-201ENST00000005226 TEX14Q8IWB6 1497 aa19.14■□□□□ 0.65
USH1C-201ENST00000005226 ZNF777Q9ULD5 760 aaPredicted RBP19.14■□□□□ 0.65
USH1C-201ENST00000005226 IQGAP2Q13576 1575 aa19.12■□□□□ 0.65
USH1C-201ENST00000005226 TARBP1Q13395 1621 aaKnown RBP19.11■□□□□ 0.65
USH1C-201ENST00000005226 WDR62O43379 1518 aa19.11■□□□□ 0.65
USH1C-201ENST00000005226 KIF21AQ7Z4S6 1674 aa19.1■□□□□ 0.65
USH1C-201ENST00000005226 ROCK1Q13464 1354 aa19.07■□□□□ 0.64
USH1C-201ENST00000005226 DHX29Q7Z478 1369 aaKnown RBP19.07■□□□□ 0.64
USH1C-201ENST00000005226 PKD2Q13563 968 aa19.06■□□□□ 0.64
USH1C-201ENST00000005226 PAK3O75914 559 aaPredicted RBP19.05■□□□□ 0.64
USH1C-201ENST00000005226 CFDP1Q9UEE9 299 aaPredicted RBP19.05■□□□□ 0.64
USH1C-201ENST00000005226 USP47Q96K76 1375 aa19.04■□□□□ 0.64
USH1C-201ENST00000005226 PZPP20742 1482 aa19.03■□□□□ 0.64
USH1C-201ENST00000005226 PRG4Q92954 1404 aaPredicted RBP19.03■□□□□ 0.64
USH1C-201ENST00000005226 NUDCQ9Y266 331 aa19.03■□□□□ 0.64
USH1C-201ENST00000005226 PBRM1Q86U86 1689 aa19.03■□□□□ 0.64
USH1C-201ENST00000005226 CCDC136Q96JN2 1154 aa19.02■□□□□ 0.64
USH1C-201ENST00000005226 NBR1Q14596 966 aa19.02■□□□□ 0.64
USH1C-201ENST00000005226 KDM2AQ9Y2K7 1162 aa19.02■□□□□ 0.64
USH1C-201ENST00000005226 DNMT1P26358 1616 aaKnown RBP19.01■□□□□ 0.63
USH1C-201ENST00000005226 NUP153P49790 1475 aaKnown RBP19.01■□□□□ 0.63
USH1C-201ENST00000005226 SMG6Q86US8 1419 aaKnown RBP19.01■□□□□ 0.63
USH1C-201ENST00000005226 BCORL1Q5H9F3 1711 aa19■□□□□ 0.63
USH1C-201ENST00000005226 ADAMTS12P58397 1594 aa19■□□□□ 0.63
USH1C-201ENST00000005226 TMC1Q8TDI8 760 aa19■□□□□ 0.63
USH1C-201ENST00000005226 SALL2Q9Y467 1007 aaPredicted RBP19■□□□□ 0.63
USH1C-201ENST00000005226 ZNF608Q9ULD9 1512 aaPredicted RBP18.99■□□□□ 0.63
USH1C-201ENST00000005226 PNISRQ8TF01 805 aaKnown RBP18.98■□□□□ 0.63
USH1C-201ENST00000005226 NOP58Q9Y2X3 529 aaKnown RBP18.97■□□□□ 0.63
USH1C-201ENST00000005226 DISP1Q96F81 1524 aa18.97■□□□□ 0.63
USH1C-201ENST00000005226 CARD11Q9BXL7 1154 aa18.96■□□□□ 0.63
USH1C-201ENST00000005226 DEKP35659 375 aaKnown RBP18.95■□□□□ 0.62
USH1C-201ENST00000005226 KIAA1107Q9UPP5 1409 aa18.94■□□□□ 0.62
USH1C-201ENST00000005226 CAMSAP2Q08AD1 1489 aa18.94■□□□□ 0.62
USH1C-201ENST00000005226 ST20-MTHFSA0A0A6YYL1 179 aa18.94■□□□□ 0.62
USH1C-201ENST00000005226 RNF123Q5XPI4 1314 aa18.92■□□□□ 0.62
USH1C-201ENST00000005226 MBD5Q9P267 1494 aa18.92■□□□□ 0.62
USH1C-201ENST00000005226 FBLN2P98095 1184 aa18.91■□□□□ 0.62
USH1C-201ENST00000005226 POLR1AO95602 1720 aaPredicted RBP18.91■□□□□ 0.62
USH1C-201ENST00000005226 KIAA0556O60303 1618 aa18.91■□□□□ 0.62
USH1C-201ENST00000005226 PLB1Q6P1J6 1458 aa18.9■□□□□ 0.62
USH1C-201ENST00000005226 NUP155O75694 1391 aa18.89■□□□□ 0.62
USH1C-201ENST00000005226 GPATCH8Q9UKJ3 1502 aaKnown RBP18.89■□□□□ 0.62
USH1C-201ENST00000005226 DCAF11Q8TEB1 546 aa18.89■□□□□ 0.62
USH1C-201ENST00000005226 KIAA0586Q9BVV6 1533 aa18.89■□□□□ 0.61
USH1C-201ENST00000005226 RAPGEF6Q8TEU7 1601 aa18.88■□□□□ 0.61
USH1C-201ENST00000005226 TROQ12816 1431 aaPredicted RBP18.88■□□□□ 0.61
USH1C-201ENST00000005226 EXOC6Q8TAG9 804 aa18.86■□□□□ 0.61
USH1C-201ENST00000005226 ANKRD50Q9ULJ7 1429 aa18.86■□□□□ 0.61
USH1C-201ENST00000005226 ANKRD30AQ9BXX3 1397 aa18.86■□□□□ 0.61
USH1C-201ENST00000005226 KDM5CP41229 1560 aa18.86■□□□□ 0.61
USH1C-201ENST00000005226 KIF14Q15058 1648 aa18.86■□□□□ 0.61
USH1C-201ENST00000005226 NPM2Q86SE8 214 aaKnown RBP18.84■□□□□ 0.61
USH1C-201ENST00000005226 ANP32AP39687 249 aaKnown RBP18.84■□□□□ 0.61
USH1C-201ENST00000005226 IPO9Q96P70 1041 aaKnown RBP18.83■□□□□ 0.61
USH1C-201ENST00000005226 MRC2Q9UBG0 1479 aa18.83■□□□□ 0.61
USH1C-201ENST00000005226 HNRNPMP52272 730 aaKnown RBP eCLIP18.82■□□□□ 0.6
USH1C-201ENST00000005226 CHMP7Q8WUX9 453 aaPredicted RBP18.82■□□□□ 0.6
USH1C-201ENST00000005226 KIF15Q9NS87 1388 aa18.82■□□□□ 0.6
USH1C-201ENST00000005226 ARID4BQ4LE39 1312 aaPredicted RBP18.81■□□□□ 0.6
USH1C-201ENST00000005226 RGL3Q3MIN7 710 aa18.8■□□□□ 0.6
USH1C-201ENST00000005226 ZBTB47Q9UFB7 747 aaPredicted RBP18.8■□□□□ 0.6
USH1C-201ENST00000005226 MYBBP1AQ9BQG0 1328 aaKnown RBP18.8■□□□□ 0.6
USH1C-201ENST00000005226 RRP1P56182 461 aaKnown RBP18.8■□□□□ 0.6
USH1C-201ENST00000005226 CDCA7LQ96GN5 454 aa18.8■□□□□ 0.6
USH1C-201ENST00000005226 GRIN2AQ12879 1464 aa18.79■□□□□ 0.6
USH1C-201ENST00000005226 LRPPRCP42704 1394 aaKnown RBP18.78■□□□□ 0.6
USH1C-201ENST00000005226 PLEKHD1A6NEE1 506 aa18.78■□□□□ 0.6
USH1C-201ENST00000005226 SKAP1Q86WV1 359 aa18.78■□□□□ 0.6
USH1C-201ENST00000005226 RCAN3Q9UKA8 241 aa18.78■□□□□ 0.6
USH1C-201ENST00000005226 RALGAPBQ86X10 1494 aa18.77■□□□□ 0.6
USH1C-201ENST00000005226 ROCK2O75116 1388 aaKnown RBP18.77■□□□□ 0.6
USH1C-201ENST00000005226 TSPY4P0CV99 314 aa18.77■□□□□ 0.6
USH1C-201ENST00000005226 TSPY10P0CW01 314 aa18.77■□□□□ 0.6
USH1C-201ENST00000005226 NBPF1Q3BBV0 1214 aa18.77■□□□□ 0.6
USH1C-201ENST00000005226 ADGRL2O95490 1459 aa18.77■□□□□ 0.6
USH1C-201ENST00000005226 UHRF1BP1Q6BDS2 1440 aa18.76■□□□□ 0.59
USH1C-201ENST00000005226 PLIN1O60240 522 aa18.76■□□□□ 0.59
USH1C-201ENST00000005226 ADGBQ8N7X0 1667 aa18.76■□□□□ 0.59
USH1C-201ENST00000005226 JPH4Q96JJ6 628 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms