RNA–Protein interactions for RNA: ENSMUST00000023147.6

Ciita-201, Transcript of MHC class II transactivator, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ciita, Length 5,254 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ciita-201ENSMUST00000023147 Casc1Q6TDU8 730 aa13.87□□□□□ -0.19
Ciita-201ENSMUST00000023147 Naip1Q9QWK5 1403 aa13.87□□□□□ -0.19
Ciita-201ENSMUST00000023147 Plcb2A3KGF7 1181 aa13.87□□□□□ -0.19
Ciita-201ENSMUST00000023147 Sin3aQ60520 1274 aaKnown RBP13.86□□□□□ -0.19
Ciita-201ENSMUST00000023147 Tiam1Q60610 1591 aa13.86□□□□□ -0.19
Ciita-201ENSMUST00000023147 Mphosph9A6H5Y1 991 aa13.86□□□□□ -0.19
Ciita-201ENSMUST00000023147 Pkd2O35245 966 aa13.86□□□□□ -0.19
Ciita-201ENSMUST00000023147 Vps8Q0P5W1 1427 aa13.85□□□□□ -0.19
Ciita-201ENSMUST00000023147 Efcab5A0JP43 1406 aa13.84□□□□□ -0.19
Ciita-201ENSMUST00000023147 LrpprcQ6PB66 1392 aaKnown RBP13.84□□□□□ -0.19
Ciita-201ENSMUST00000023147 Rtn4Q99P72 1162 aaKnown RBP13.83□□□□□ -0.2
Ciita-201ENSMUST00000023147 Arid4bA2CG63 1314 aaKnown RBP13.83□□□□□ -0.2
Ciita-201ENSMUST00000023147 Iqcf3Q9D498 203 aa13.81□□□□□ -0.2
Ciita-201ENSMUST00000023147 Gm6268A2A3U9 297 aa13.81□□□□□ -0.2
Ciita-201ENSMUST00000023147 Eif4g2Q62448 906 aaKnown RBP13.81□□□□□ -0.2
Ciita-201ENSMUST00000023147 Polr1aO35134 1717 aaKnown RBP13.81□□□□□ -0.2
Ciita-201ENSMUST00000023147 Mapk8ip3Q9ESN9 1337 aa13.81□□□□□ -0.2
Ciita-201ENSMUST00000023147 Rock2P70336 1388 aa13.8□□□□□ -0.2
Ciita-201ENSMUST00000023147 Mroh2bQ7M6Y6 1581 aa13.8□□□□□ -0.2
Ciita-201ENSMUST00000023147 Clstn1Q9EPL2 979 aa13.78□□□□□ -0.2
Ciita-201ENSMUST00000023147 Exosc9Q9JHI7 438 aaKnown RBP13.78□□□□□ -0.2
Ciita-201ENSMUST00000023147 Ccnb3Q810T2 1396 aa13.78□□□□□ -0.2
Ciita-201ENSMUST00000023147 Gm973E9Q295 1059 aa13.78□□□□□ -0.2
Ciita-201ENSMUST00000023147 Zscan21Q07231 555 aa13.78□□□□□ -0.2
Ciita-201ENSMUST00000023147 Grin2bQ01097 1482 aa13.78□□□□□ -0.2
Ciita-201ENSMUST00000023147 Mak16Q8BGS0 296 aaKnown RBP13.77□□□□□ -0.2
Ciita-201ENSMUST00000023147 Map7O88735 730 aa13.77□□□□□ -0.2
Ciita-201ENSMUST00000023147 AqrQ8CFQ3 1481 aaKnown RBP13.77□□□□□ -0.21
Ciita-201ENSMUST00000023147 Rundc1Q0VDN7 615 aa13.77□□□□□ -0.21
Ciita-201ENSMUST00000023147 Rwdd1Q9CQK7 243 aa13.77□□□□□ -0.21
Ciita-201ENSMUST00000023147 PtprkP35822 1457 aa13.76□□□□□ -0.21
Ciita-201ENSMUST00000023147 Grwd1Q810D6 446 aaKnown RBP13.76□□□□□ -0.21
Ciita-201ENSMUST00000023147 Slc4a3P16283 1227 aa13.76□□□□□ -0.21
Ciita-201ENSMUST00000023147 Dnai1Q8C0M8 701 aa13.76□□□□□ -0.21
Ciita-201ENSMUST00000023147 NudcO35685 332 aaKnown RBP13.75□□□□□ -0.21
Ciita-201ENSMUST00000023147 EspnQ9ET47 871 aa13.75□□□□□ -0.21
Ciita-201ENSMUST00000023147 Calcoco2A2A6M5 331 aa13.75□□□□□ -0.21
Ciita-201ENSMUST00000023147 Dnai2A2AC93 623 aa13.75□□□□□ -0.21
Ciita-201ENSMUST00000023147 Washc2Q6PGL7 1334 aa13.75□□□□□ -0.21
Ciita-201ENSMUST00000023147 Srpk2O54781 681 aaKnown RBP13.74□□□□□ -0.21
Ciita-201ENSMUST00000023147 AU015836B2RUM3 263 aa13.74□□□□□ -0.21
Ciita-201ENSMUST00000023147 Lamc3Q9R0B6 1581 aa13.74□□□□□ -0.21
Ciita-201ENSMUST00000023147 Plekhh2Q8C115 1491 aa13.74□□□□□ -0.21
Ciita-201ENSMUST00000023147 Frmpd1A2AKB4 1549 aa13.73□□□□□ -0.21
Ciita-201ENSMUST00000023147 Dhx29Q6PGC1 1365 aaKnown RBP13.73□□□□□ -0.21
Ciita-201ENSMUST00000023147 Cabp1Q9JLK7 227 aa13.72□□□□□ -0.21
Ciita-201ENSMUST00000023147 Anapc15P60007 132 aa13.72□□□□□ -0.21
Ciita-201ENSMUST00000023147 Camsap1A2AHC3 1581 aa13.72□□□□□ -0.21
Ciita-201ENSMUST00000023147 Hsp90b1P08113 802 aaKnown RBP13.72□□□□□ -0.21
Ciita-201ENSMUST00000023147 Gtf3c3Q3TMP1 882 aa13.71□□□□□ -0.21
Ciita-201ENSMUST00000023147 Dhx57Q6P5D3 1388 aaKnown RBP13.7□□□□□ -0.22
Ciita-201ENSMUST00000023147 Kdm2aP59997 1161 aa13.7□□□□□ -0.22
Ciita-201ENSMUST00000023147 Usp47Q8BY87 1376 aa13.7□□□□□ -0.22
Ciita-201ENSMUST00000023147 Chmp5Q9D7S9 219 aa13.7□□□□□ -0.22
Ciita-201ENSMUST00000023147 MccE9PWI3 1003 aa13.69□□□□□ -0.22
Ciita-201ENSMUST00000023147 Sh3bp5Q9Z131 463 aa13.69□□□□□ -0.22
Ciita-201ENSMUST00000023147 Wdr62Q3U3T8 1523 aa13.68□□□□□ -0.22
Ciita-201ENSMUST00000023147 Mroh3A0A1D5RM54 893 aa13.68□□□□□ -0.22
Ciita-201ENSMUST00000023147 4933402E13RikQ9D4D2 429 aa13.68□□□□□ -0.22
Ciita-201ENSMUST00000023147 Pde3bQ61409 1100 aa13.67□□□□□ -0.22
Ciita-201ENSMUST00000023147 Gm20521D3Z5F7 333 aa13.66□□□□□ -0.22
Ciita-201ENSMUST00000023147 PtmsQ9D0J8 101 aaKnown RBP13.66□□□□□ -0.22
Ciita-201ENSMUST00000023147 TnnQ80Z71 1560 aa13.66□□□□□ -0.22
Ciita-201ENSMUST00000023147 B4galnt3Q6L8S8 986 aa13.66□□□□□ -0.22
Ciita-201ENSMUST00000023147 TchhA0A0B4J1F9 1599 aa13.65□□□□□ -0.22
Ciita-201ENSMUST00000023147 KnstrnQ9D9Z1 312 aaKnown RBP13.65□□□□□ -0.22
Ciita-201ENSMUST00000023147 Rrp7aQ9D1C9 280 aaKnown RBP13.64□□□□□ -0.23
Ciita-201ENSMUST00000023147 Tmf1B9EKI3 1091 aa13.63□□□□□ -0.23
Ciita-201ENSMUST00000023147 Map4P27546 1125 aaKnown RBP13.63□□□□□ -0.23
Ciita-201ENSMUST00000023147 Pcf11G3X9Z4 1553 aa13.63□□□□□ -0.23
Ciita-201ENSMUST00000023147 1700019A02RikA0A087WPV9 146 aa13.63□□□□□ -0.23
Ciita-201ENSMUST00000023147 HnrnpuQ8VEK3 800 aaKnown RBP13.63□□□□□ -0.23
Ciita-201ENSMUST00000023147 Apbb1Q9QXJ1 710 aa13.63□□□□□ -0.23
Ciita-201ENSMUST00000023147 Ipo8Q7TMY7 1010 aa13.63□□□□□ -0.23
Ciita-201ENSMUST00000023147 AknaQ80VW7 1404 aa13.63□□□□□ -0.23
Ciita-201ENSMUST00000023147 Duox2A2AQ99 1517 aa13.63□□□□□ -0.23
Ciita-201ENSMUST00000023147 PogzQ8BZH4 1409 aaKnown RBP13.62□□□□□ -0.23
Ciita-201ENSMUST00000023147 Mre11Q61216 706 aa13.62□□□□□ -0.23
Ciita-201ENSMUST00000023147 Neurod2Q62414 383 aa13.62□□□□□ -0.23
Ciita-201ENSMUST00000023147 NgefQ8CHT1 710 aa13.62□□□□□ -0.23
Ciita-201ENSMUST00000023147 Dbr1Q923B1 550 aa13.62□□□□□ -0.23
Ciita-201ENSMUST00000023147 Rassf8Q8CJ96 419 aa13.61□□□□□ -0.23
Ciita-201ENSMUST00000023147 PnisrA2AJT4 805 aaKnown RBP13.6□□□□□ -0.23
Ciita-201ENSMUST00000023147 MyclP10166 368 aa13.6□□□□□ -0.23
Ciita-201ENSMUST00000023147 Znf316Q6PGE4 1016 aa13.6□□□□□ -0.23
Ciita-201ENSMUST00000023147 Trak1Q6PD31 939 aa13.59□□□□□ -0.23
Ciita-201ENSMUST00000023147 Tpm3-rs7D3Z2H9 248 aa13.59□□□□□ -0.23
Ciita-201ENSMUST00000023147 Tnnt2P50752 301 aa13.59□□□□□ -0.23
Ciita-201ENSMUST00000023147 Prkrip1Q9CWV6 186 aaKnown RBP13.59□□□□□ -0.23
Ciita-201ENSMUST00000023147 AampJ3QN89 436 aa13.58□□□□□ -0.23
Ciita-201ENSMUST00000023147 Camsap2Q8C1B1 1461 aa13.58□□□□□ -0.24
Ciita-201ENSMUST00000023147 Sart3Q9JLI8 962 aaKnown RBP13.58□□□□□ -0.24
Ciita-201ENSMUST00000023147 Naip2Q9QUK4 1447 aa13.58□□□□□ -0.24
Ciita-201ENSMUST00000023147 Ankrd26Q811D2 1581 aa13.58□□□□□ -0.24
Ciita-201ENSMUST00000023147 Pknox2Q8BG99 474 aa13.58□□□□□ -0.24
Ciita-201ENSMUST00000023147 Dapk1Q80YE7 1442 aa13.57□□□□□ -0.24
Ciita-201ENSMUST00000023147 Nup155Q99P88 1391 aaKnown RBP13.57□□□□□ -0.24
Ciita-201ENSMUST00000023147 Ift140E9PY46 1464 aa13.57□□□□□ -0.24
Ciita-201ENSMUST00000023147 Nol10Q5RJG1 687 aaKnown RBP13.55□□□□□ -0.24
Ciita-201ENSMUST00000023147 Noc3lQ8VI84 807 aaKnown RBP13.55□□□□□ -0.24
Retrieved 100 of 22,080 RNA–protein pairs in 22.8 ms